data_3AO9 # _model_server_result.job_id 6ilA2OOqHYZbrLaOeci92A _model_server_result.datetime_utc '2025-01-10 17:37:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ao9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":118}' # _entry.id 3AO9 # _exptl.entry_id 3AO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AO9 _cell.length_a 62.71 _cell.length_b 62.71 _cell.length_c 100.51 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 32 A GLU 32 1_555 C CD CD . A CD 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 A OE1 GLU 32 A GLU 32 1_555 C CD CD . A CD 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc3 A O GLU 32 A GLU 32 1_555 F CD CD . B CD 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc4 C CD CD . A CD 117 1_555 G O HOH . A HOH 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc5 C CD CD . A CD 117 1_555 B O GLU 32 B GLU 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 C CD CD . A CD 117 1_555 H O HOH . B HOH 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc7 C CD CD . A CD 117 1_555 H O HOH . B HOH 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc8 D CD CD . A CD 118 1_555 G O HOH . A HOH 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc9 D CD CD . A CD 118 1_555 G O HOH . A HOH 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc10 D CD CD . A CD 118 1_555 H O HOH . B HOH 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc11 E CD CD . A CD 119 1_555 G O HOH . A HOH 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc12 G O HOH . A HOH 174 1_555 F CD CD . B CD 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc13 B OE2 GLU 32 B GLU 32 1_555 F CD CD . B CD 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc14 B OE1 GLU 32 B GLU 32 1_555 F CD CD . B CD 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AO9 _atom_sites.fract_transf_matrix[1][1] 0.015946 _atom_sites.fract_transf_matrix[1][2] 0.009207 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 117 1 CD CD . D 2 CD A 1 118 3 CD CD . E 2 CD A 1 119 4 CD CD . F 2 CD B 1 117 2 CD CD . G 3 HOH A 1 120 1 HOH HOH . G 3 HOH A 2 121 2 HOH HOH . G 3 HOH A 3 122 3 HOH HOH . G 3 HOH A 4 123 5 HOH HOH . G 3 HOH A 5 124 6 HOH HOH . G 3 HOH A 6 125 8 HOH HOH . G 3 HOH A 7 126 9 HOH HOH . G 3 HOH A 8 127 10 HOH HOH . G 3 HOH A 9 128 11 HOH HOH . G 3 HOH A 10 129 14 HOH HOH . G 3 HOH A 11 130 15 HOH HOH . G 3 HOH A 12 131 16 HOH HOH . G 3 HOH A 13 132 19 HOH HOH . G 3 HOH A 14 133 22 HOH HOH . G 3 HOH A 15 134 23 HOH HOH . G 3 HOH A 16 135 25 HOH HOH . G 3 HOH A 17 136 26 HOH HOH . G 3 HOH A 18 137 28 HOH HOH . G 3 HOH A 19 138 32 HOH HOH . G 3 HOH A 20 139 36 HOH HOH . G 3 HOH A 21 140 37 HOH HOH . G 3 HOH A 22 141 38 HOH HOH . G 3 HOH A 23 142 41 HOH HOH . G 3 HOH A 24 143 42 HOH HOH . G 3 HOH A 25 144 44 HOH HOH . G 3 HOH A 26 145 46 HOH HOH . G 3 HOH A 27 146 49 HOH HOH . G 3 HOH A 28 147 50 HOH HOH . G 3 HOH A 29 148 51 HOH HOH . G 3 HOH A 30 149 52 HOH HOH . G 3 HOH A 31 150 54 HOH HOH . G 3 HOH A 32 151 55 HOH HOH . G 3 HOH A 33 152 58 HOH HOH . G 3 HOH A 34 153 60 HOH HOH . G 3 HOH A 35 154 62 HOH HOH . G 3 HOH A 36 155 63 HOH HOH . G 3 HOH A 37 156 65 HOH HOH . G 3 HOH A 38 157 71 HOH HOH . G 3 HOH A 39 158 72 HOH HOH . G 3 HOH A 40 159 73 HOH HOH . G 3 HOH A 41 160 74 HOH HOH . G 3 HOH A 42 161 82 HOH HOH . G 3 HOH A 43 162 85 HOH HOH . G 3 HOH A 44 163 88 HOH HOH . G 3 HOH A 45 164 89 HOH HOH . G 3 HOH A 46 165 90 HOH HOH . G 3 HOH A 47 166 92 HOH HOH . G 3 HOH A 48 167 93 HOH HOH . G 3 HOH A 49 168 98 HOH HOH . G 3 HOH A 50 169 99 HOH HOH . G 3 HOH A 51 170 101 HOH HOH . G 3 HOH A 52 171 102 HOH HOH . G 3 HOH A 53 172 103 HOH HOH . G 3 HOH A 54 173 105 HOH HOH . G 3 HOH A 55 174 107 HOH HOH . G 3 HOH A 56 175 108 HOH HOH . G 3 HOH A 57 176 110 HOH HOH . G 3 HOH A 58 177 113 HOH HOH . G 3 HOH A 59 178 114 HOH HOH . G 3 HOH A 60 179 115 HOH HOH . G 3 HOH A 61 180 118 HOH HOH . H 3 HOH B 1 118 4 HOH HOH . H 3 HOH B 2 119 7 HOH HOH . H 3 HOH B 3 120 12 HOH HOH . H 3 HOH B 4 121 13 HOH HOH . H 3 HOH B 5 122 17 HOH HOH . H 3 HOH B 6 123 18 HOH HOH . H 3 HOH B 7 124 20 HOH HOH . H 3 HOH B 8 125 21 HOH HOH . H 3 HOH B 9 126 27 HOH HOH . H 3 HOH B 10 127 29 HOH HOH . H 3 HOH B 11 128 30 HOH HOH . H 3 HOH B 12 129 31 HOH HOH . H 3 HOH B 13 130 33 HOH HOH . H 3 HOH B 14 131 34 HOH HOH . H 3 HOH B 15 132 35 HOH HOH . H 3 HOH B 16 133 39 HOH HOH . H 3 HOH B 17 134 40 HOH HOH . H 3 HOH B 18 135 43 HOH HOH . H 3 HOH B 19 136 45 HOH HOH . H 3 HOH B 20 137 47 HOH HOH . H 3 HOH B 21 138 48 HOH HOH . H 3 HOH B 22 139 53 HOH HOH . H 3 HOH B 23 140 56 HOH HOH . H 3 HOH B 24 141 57 HOH HOH . H 3 HOH B 25 142 59 HOH HOH . H 3 HOH B 26 143 61 HOH HOH . H 3 HOH B 27 144 66 HOH HOH . H 3 HOH B 28 145 67 HOH HOH . H 3 HOH B 29 146 68 HOH HOH . H 3 HOH B 30 147 69 HOH HOH . H 3 HOH B 31 148 70 HOH HOH . H 3 HOH B 32 149 75 HOH HOH . H 3 HOH B 33 150 76 HOH HOH . H 3 HOH B 34 151 77 HOH HOH . H 3 HOH B 35 152 78 HOH HOH . H 3 HOH B 36 153 79 HOH HOH . H 3 HOH B 37 154 80 HOH HOH . H 3 HOH B 38 155 81 HOH HOH . H 3 HOH B 39 156 83 HOH HOH . H 3 HOH B 40 157 84 HOH HOH . H 3 HOH B 41 158 86 HOH HOH . H 3 HOH B 42 159 87 HOH HOH . H 3 HOH B 43 160 91 HOH HOH . H 3 HOH B 44 161 94 HOH HOH . H 3 HOH B 45 162 96 HOH HOH . H 3 HOH B 46 163 97 HOH HOH . H 3 HOH B 47 164 100 HOH HOH . H 3 HOH B 48 165 106 HOH HOH . H 3 HOH B 49 166 109 HOH HOH . H 3 HOH B 50 167 111 HOH HOH . H 3 HOH B 51 168 112 HOH HOH . H 3 HOH B 52 169 116 HOH HOH . H 3 HOH B 53 170 117 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.667 _atom_site.Cartn_y -7.975 _atom_site.Cartn_z 8.083 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 118 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #