data_3AOD
#
_model_server_result.job_id            gFBqL4JkO_Kv0ZvXAsRvWQ 
_model_server_result.datetime_utc      '2024-11-24 01:06:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aod 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2002}' 
#
_entry.id    3AOD 
#
_exptl.entry_id    3AOD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              822.94 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIFAMPICIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.75 
_cell.angle_gamma         90 
_cell.entry_id            3AOD 
_cell.length_a            226.604 
_cell.length_b            134.496 
_cell.length_c            162.833 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AOD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C43 H58 N4 O12' 
_chem_comp.formula_weight    822.94 
_chem_comp.id                RFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIFAMPICIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RFP doub 340 n y 
C1 C9 RFP sing 341 n y 
C1 O1 RFP sing 342 n n 
C2 C3 RFP sing 343 n y 
C2 N1 RFP sing 344 n n 
C3 C4 RFP doub 345 n y 
C3 C43 RFP sing 346 n n 
C4 C10 RFP sing 347 n y 
C4 O12 RFP sing 348 n n 
C5 C6 RFP doub 349 n y 
C5 C10 RFP sing 350 n y 
C5 C11 RFP sing 351 n n 
C6 C7 RFP sing 352 n y 
C6 O3 RFP sing 353 n n 
C7 C8 RFP doub 354 n y 
C7 C14 RFP sing 355 n n 
C8 C9 RFP sing 356 n y 
C8 O2 RFP sing 357 n n 
C9 C10 RFP doub 358 n y 
C11 C12 RFP sing 359 n n 
C11 O4 RFP doub 360 n n 
C12 C13 RFP sing 361 n n 
C12 O3 RFP sing 362 n n 
C12 O5 RFP sing 363 n n 
C13 H131 RFP sing 364 n n 
C13 H132 RFP sing 365 n n 
C13 H133 RFP sing 366 n n 
C14 H141 RFP sing 367 n n 
C14 H142 RFP sing 368 n n 
C14 H143 RFP sing 369 n n 
C15 C16 RFP sing 370 n n 
C15 N1 RFP sing 371 n n 
C15 O11 RFP doub 372 n n 
C16 C17 RFP doub 373 z n 
C16 C30 RFP sing 374 n n 
C17 C18 RFP sing 375 n n 
C17 H17C RFP sing 376 n n 
C18 C19 RFP doub 377 e n 
C18 H18C RFP sing 378 n n 
C19 C20 RFP sing 379 n n 
C19 H19C RFP sing 380 n n 
C20 C21 RFP sing 381 n n 
C20 C31 RFP sing 382 n n 
C20 H20C RFP sing 383 n n 
C21 C22 RFP sing 384 n n 
C21 O10 RFP sing 385 n n 
C21 H211 RFP sing 386 n n 
C22 C23 RFP sing 387 n n 
C22 C32 RFP sing 388 n n 
C22 H22C RFP sing 389 n n 
C23 C24 RFP sing 390 n n 
C23 O9 RFP sing 391 n n 
C23 H23C RFP sing 392 n n 
C24 C25 RFP sing 393 n n 
C24 C33 RFP sing 394 n n 
C24 H24C RFP sing 395 n n 
C25 C26 RFP sing 396 n n 
C25 O7 RFP sing 397 n n 
C25 H25C RFP sing 398 n n 
C26 C27 RFP sing 399 n n 
C26 C34 RFP sing 400 n n 
C26 H26C RFP sing 401 n n 
C27 C28 RFP sing 402 n n 
C27 O6 RFP sing 403 n n 
C27 H27C RFP sing 404 n n 
C28 C29 RFP doub 405 e n 
C28 H28C RFP sing 406 n n 
C29 O5 RFP sing 407 n n 
C29 H29C RFP sing 408 n n 
C30 H301 RFP sing 409 n n 
C30 H302 RFP sing 410 n n 
C30 H303 RFP sing 411 n n 
C31 H311 RFP sing 412 n n 
C31 H312 RFP sing 413 n n 
C31 H313 RFP sing 414 n n 
C32 H321 RFP sing 415 n n 
C32 H322 RFP sing 416 n n 
C32 H323 RFP sing 417 n n 
C33 H331 RFP sing 418 n n 
C33 H332 RFP sing 419 n n 
C33 H333 RFP sing 420 n n 
C34 H341 RFP sing 421 n n 
C34 H342 RFP sing 422 n n 
C34 H343 RFP sing 423 n n 
C35 C36 RFP sing 424 n n 
C35 O7 RFP sing 425 n n 
C35 O8 RFP doub 426 n n 
C36 H361 RFP sing 427 n n 
C36 H362 RFP sing 428 n n 
C36 H363 RFP sing 429 n n 
C37 O6 RFP sing 430 n n 
C37 H371 RFP sing 431 n n 
C37 H372 RFP sing 432 n n 
C37 H373 RFP sing 433 n n 
C38 N4 RFP sing 434 n n 
C38 H381 RFP sing 435 n n 
C38 H382 RFP sing 436 n n 
C38 H383 RFP sing 437 n n 
C39 C40 RFP sing 438 n n 
C39 N4 RFP sing 439 n n 
C39 H391 RFP sing 440 n n 
C39 H392 RFP sing 441 n n 
C40 N3 RFP sing 442 n n 
C40 H401 RFP sing 443 n n 
C40 H402 RFP sing 444 n n 
C41 C42 RFP sing 445 n n 
C41 N3 RFP sing 446 n n 
C41 H411 RFP sing 447 n n 
C41 H412 RFP sing 448 n n 
C42 N4 RFP sing 449 n n 
C42 H421 RFP sing 450 n n 
C42 H422 RFP sing 451 n n 
C43 N2 RFP doub 452 e n 
C43 HC43 RFP sing 453 n n 
N1 HN1 RFP sing 454 n n 
N2 N3 RFP sing 455 n n 
O1 HO1 RFP sing 456 n n 
O2 HO2 RFP sing 457 n n 
O9 HO9 RFP sing 458 n n 
O10 H10O RFP sing 459 n n 
O12 H12O RFP sing 460 n n 
#
_atom_sites.entry_id                     3AOD 
_atom_sites.fract_transf_matrix[1][1]    0.004413 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000601 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007435 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006198 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MIY A 1 2001 2001 MIY MIY . 
E 3 RFP C 1 2002 2002 RFP RFP . 
F 4 HOH A 1 3002 3002 HOH HOH . 
F 4 HOH A 2 3004 3004 HOH HOH . 
G 4 HOH B 1 3001 3001 HOH HOH . 
G 4 HOH B 2 3003 3003 HOH HOH . 
H 4 HOH C 1 3005 3005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RFP . . . E 3 -65.13 -23.409 -65.099 1 135.37 ? C1 RFP 2002 C 1 
HETATM 2 C C2 RFP . . . E 3 -65.076 -23.965 -66.364 1 135.36 ? C2 RFP 2002 C 1 
HETATM 3 C C3 RFP . . . E 3 -66.125 -23.79 -67.258 1 135.72 ? C3 RFP 2002 C 1 
HETATM 4 C C4 RFP . . . E 3 -67.245 -23.064 -66.864 1 135.94 ? C4 RFP 2002 C 1 
HETATM 5 C C5 RFP . . . E 3 -68.404 -21.73 -65.108 1 138.27 ? C5 RFP 2002 C 1 
HETATM 6 C C6 RFP . . . E 3 -68.411 -21.178 -63.844 1 138.92 ? C6 RFP 2002 C 1 
HETATM 7 C C7 RFP . . . E 3 -67.357 -21.356 -62.954 1 138.97 ? C7 RFP 2002 C 1 
HETATM 8 C C8 RFP . . . E 3 -66.26 -22.107 -63.39 1 137.78 ? C8 RFP 2002 C 1 
HETATM 9 C C9 RFP . . . E 3 -66.239 -22.67 -64.685 1 136.49 ? C9 RFP 2002 C 1 
HETATM 10 C C10 RFP . . . E 3 -67.317 -22.492 -65.575 1 136.65 ? C10 RFP 2002 C 1 
HETATM 11 C C11 RFP . . . E 3 -69.675 -21.353 -65.784 1 139.55 ? C11 RFP 2002 C 1 
HETATM 12 C C12 RFP . . . E 3 -70.559 -20.96 -64.591 1 139.9 ? C12 RFP 2002 C 1 
HETATM 13 C C13 RFP . . . E 3 -71.501 -19.814 -64.968 1 139.87 ? C13 RFP 2002 C 1 
HETATM 14 C C14 RFP . . . E 3 -67.397 -20.749 -61.563 1 139.37 ? C14 RFP 2002 C 1 
HETATM 15 C C15 RFP . . . E 3 -63.007 -24.226 -67.53 1 135.79 ? C15 RFP 2002 C 1 
HETATM 16 C C16 RFP . . . E 3 -61.823 -25.085 -67.797 1 135.82 ? C16 RFP 2002 C 1 
HETATM 17 C C17 RFP . . . E 3 -61.862 -26.419 -68.03 1 136.03 ? C17 RFP 2002 C 1 
HETATM 18 C C18 RFP . . . E 3 -63.059 -27.26 -68.075 1 136.51 ? C18 RFP 2002 C 1 
HETATM 19 C C19 RFP . . . E 3 -63.064 -28.39 -68.789 1 136.57 ? C19 RFP 2002 C 1 
HETATM 20 C C20 RFP . . . E 3 -64.272 -29.302 -68.886 1 136.89 ? C20 RFP 2002 C 1 
HETATM 21 C C21 RFP . . . E 3 -65.391 -28.858 -67.93 1 136.82 ? C21 RFP 2002 C 1 
HETATM 22 C C22 RFP . . . E 3 -66.79 -29.456 -68.167 1 137.01 ? C22 RFP 2002 C 1 
HETATM 23 C C23 RFP . . . E 3 -67.813 -29.092 -67.071 1 137.39 ? C23 RFP 2002 C 1 
HETATM 24 C C24 RFP . . . E 3 -68.491 -27.72 -67.162 1 137.51 ? C24 RFP 2002 C 1 
HETATM 25 C C25 RFP . . . E 3 -69.559 -27.595 -66.059 1 137.64 ? C25 RFP 2002 C 1 
HETATM 26 C C26 RFP . . . E 3 -69.573 -26.201 -65.428 1 137.52 ? C26 RFP 2002 C 1 
HETATM 27 C C27 RFP . . . E 3 -70.796 -25.939 -64.529 1 137.78 ? C27 RFP 2002 C 1 
HETATM 28 C C28 RFP . . . E 3 -71.286 -24.507 -64.71 1 138.29 ? C28 RFP 2002 C 1 
HETATM 29 C C29 RFP . . . E 3 -70.875 -23.481 -63.939 1 138.97 ? C29 RFP 2002 C 1 
HETATM 30 C C30 RFP . . . E 3 -60.453 -24.473 -67.823 1 135.03 ? C30 RFP 2002 C 1 
HETATM 31 C C31 RFP . . . E 3 -64.685 -29.32 -70.353 1 137.36 ? C31 RFP 2002 C 1 
HETATM 32 C C32 RFP . . . E 3 -66.758 -30.976 -68.343 1 136.81 ? C32 RFP 2002 C 1 
HETATM 33 C C33 RFP . . . E 3 -69.051 -27.407 -68.548 1 137.85 ? C33 RFP 2002 C 1 
HETATM 34 C C34 RFP . . . E 3 -68.245 -25.959 -64.703 1 137.22 ? C34 RFP 2002 C 1 
HETATM 35 C C35 RFP . . . E 3 -71.213 -29.392 -66.297 1 139.1 ? C35 RFP 2002 C 1 
HETATM 36 C C36 RFP . . . E 3 -72.4 -29.986 -67.005 1 139 ? C36 RFP 2002 C 1 
HETATM 37 C C37 RFP . . . E 3 -71.152 -27.328 -62.588 1 138.23 ? C37 RFP 2002 C 1 
HETATM 38 C C38 RFP . . . E 3 -62.923 -22.394 -71.238 1 131.25 ? C38 RFP 2002 C 1 
HETATM 39 C C39 RFP . . . E 3 -62.897 -24.793 -71.249 1 131.77 ? C39 RFP 2002 C 1 
HETATM 40 C C40 RFP . . . E 3 -64.137 -25.642 -70.973 1 133.24 ? C40 RFP 2002 C 1 
HETATM 41 C C41 RFP . . . E 3 -65.721 -23.982 -71.837 1 133.07 ? C41 RFP 2002 C 1 
HETATM 42 C C42 RFP . . . E 3 -64.521 -23.546 -72.686 1 131.94 ? C42 RFP 2002 C 1 
HETATM 43 C C43 RFP . . . E 3 -66.097 -24.417 -68.613 1 135.74 ? C43 RFP 2002 C 1 
HETATM 44 N N1 RFP . . . E 3 -63.942 -24.708 -66.715 1 135.59 ? N1 RFP 2002 C 1 
HETATM 45 N N2 RFP . . . E 3 -65.262 -24.185 -69.535 1 135.38 ? N2 RFP 2002 C 1 
HETATM 46 N N3 RFP . . . E 3 -65.36 -24.853 -70.7 1 134.15 ? N3 RFP 2002 C 1 
HETATM 47 N N4 RFP . . . E 3 -63.176 -23.593 -72.059 1 131.29 ? N4 RFP 2002 C 1 
HETATM 48 O O1 RFP . . . E 3 -64.078 -23.597 -64.26 1 134.26 ? O1 RFP 2002 C 1 
HETATM 49 O O2 RFP . . . E 3 -65.203 -22.288 -62.542 1 137.45 ? O2 RFP 2002 C 1 
HETATM 50 O O3 RFP . . . E 3 -69.587 -20.508 -63.616 1 139.41 ? O3 RFP 2002 C 1 
HETATM 51 O O4 RFP . . . E 3 -70.277 -22.382 -66.576 1 140.62 ? O4 RFP 2002 C 1 
HETATM 52 O O5 RFP . . . E 3 -71.35 -22.096 -64.132 1 139.63 ? O5 RFP 2002 C 1 
HETATM 53 O O6 RFP . . . E 3 -70.487 -26.192 -63.15 1 138.3 ? O6 RFP 2002 C 1 
HETATM 54 O O7 RFP . . . E 3 -70.864 -27.979 -66.522 1 138.41 ? O7 RFP 2002 C 1 
HETATM 55 O O8 RFP . . . E 3 -70.54 -30.081 -65.54 1 139.22 ? O8 RFP 2002 C 1 
HETATM 56 O O9 RFP . . . E 3 -67.22 -29.177 -65.766 1 137.57 ? O9 RFP 2002 C 1 
HETATM 57 O O10 RFP . . . E 3 -64.96 -29.182 -66.605 1 136.36 ? O10 RFP 2002 C 1 
HETATM 58 O O11 RFP . . . E 3 -63.135 -23.107 -68.029 1 135.62 ? O11 RFP 2002 C 1 
HETATM 59 O O12 RFP . . . E 3 -68.245 -22.93 -67.781 1 134.91 ? O12 RFP 2002 C 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           59 
#