data_3AOU # _model_server_result.job_id yo5YdWlyYLY_peN-0ey-3g _model_server_result.datetime_utc '2024-11-08 11:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aou # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":201}' # _entry.id 3AOU # _exptl.entry_id 3AOU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DICYCLOHEXYLUREA _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AOU _cell.length_a 120.41 _cell.length_b 124.937 _cell.length_c 208.221 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AOU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CD GLU 139 A GLU 139 1_555 K N1 DCW . A DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 B CD GLU 139 B GLU 139 1_555 L N1 DCW . B DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 C CD GLU 139 C GLU 139 1_555 N N1 DCW . C DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale4 D CD GLU 139 D GLU 139 1_555 O N1 DCW . D DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 E CD GLU 139 E GLU 139 1_555 P N1 DCW . E DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 F CD GLU 139 F GLU 139 1_555 R N1 DCW . F DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale7 G CD GLU 139 G GLU 139 1_555 S N1 DCW . G DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale8 H CD GLU 139 H GLU 139 1_555 T N1 DCW . H DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale9 I CD GLU 139 I GLU 139 1_555 U N1 DCW . I DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale10 J CD GLU 139 J GLU 139 1_555 V N1 DCW . J DCW 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? # _chem_comp.formula 'C13 H24 N2 O' _chem_comp.formula_weight 224.342 _chem_comp.id DCW _chem_comp.mon_nstd_flag . _chem_comp.name DICYCLOHEXYLUREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DCW sing 44 n n N1 C2 DCW sing 45 n n O1 C1 DCW doub 46 n n C1 N2 DCW sing 47 n n C2 C3 DCW sing 48 n n C2 C7 DCW sing 49 n n N2 C8 DCW sing 50 n n C3 C4 DCW sing 51 n n C7 C6 DCW sing 52 n n C4 C5 DCW sing 53 n n C5 C6 DCW sing 54 n n C8 C9 DCW sing 55 n n C8 C13 DCW sing 56 n n C9 C10 DCW sing 57 n n C13 C12 DCW sing 58 n n C10 C11 DCW sing 59 n n C11 C12 DCW sing 60 n n N1 H1 DCW sing 61 n n C2 H2 DCW sing 62 n n N2 HA DCW sing 63 n n C3 H31C DCW sing 64 n n C3 H32C DCW sing 65 n n C7 H71C DCW sing 66 n n C7 H72C DCW sing 67 n n C8 H8 DCW sing 68 n n C4 H41C DCW sing 69 n n C4 H42C DCW sing 70 n n C6 H61C DCW sing 71 n n C6 H62C DCW sing 72 n n C5 H51C DCW sing 73 n n C5 H52C DCW sing 74 n n C9 H91C DCW sing 75 n n C9 H92C DCW sing 76 n n C13 H131 DCW sing 77 n n C13 H132 DCW sing 78 n n C10 H101 DCW sing 79 n n C10 H102 DCW sing 80 n n C12 H121 DCW sing 81 n n C12 H122 DCW sing 82 n n C11 H111 DCW sing 83 n n C11 H112 DCW sing 84 n n # _atom_sites.entry_id 3AOU _atom_sites.fract_transf_matrix[1][1] 0.008305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 DCW A 1 201 139 DCW GLH . L 2 DCW B 1 201 139 DCW GLH . M 3 UMQ C 1 202 1001 UMQ UMQ . N 2 DCW C 1 201 139 DCW GLH . O 2 DCW D 1 201 139 DCW GLH . P 2 DCW E 1 201 139 DCW GLH . Q 3 UMQ F 1 202 1002 UMQ UMQ . R 2 DCW F 1 201 139 DCW GLH . S 2 DCW G 1 201 139 DCW GLH . T 2 DCW H 1 201 139 DCW GLH . U 2 DCW I 1 201 139 DCW GLH . V 2 DCW J 1 201 139 DCW GLH . W 4 HOH G 1 301 2003 HOH HOH . X 4 HOH H 1 301 2005 HOH HOH . Y 4 HOH I 1 301 2007 HOH HOH . Y 4 HOH I 2 302 2008 HOH HOH . Z 4 HOH J 1 301 2009 HOH HOH . Z 4 HOH J 2 302 2010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCW . . . V 2 31.292 54.864 3.451 1 73.86 ? N1 DCW 201 J 1 HETATM 2 O O1 DCW . . . V 2 33.084 56.164 2.685 1 78.47 ? O1 DCW 201 J 1 HETATM 3 C C1 DCW . . . V 2 32.094 56.089 3.398 1 76.82 ? C1 DCW 201 J 1 HETATM 4 C C2 DCW . . . V 2 30.786 54.359 2.117 1 72.5 ? C2 DCW 201 J 1 HETATM 5 N N2 DCW . . . V 2 31.73 57.15 4.146 1 78.64 ? N2 DCW 201 J 1 HETATM 6 C C3 DCW . . . V 2 30.238 55.483 1.224 1 72.93 ? C3 DCW 201 J 1 HETATM 7 C C7 DCW . . . V 2 31.785 53.479 1.332 1 71.42 ? C7 DCW 201 J 1 HETATM 8 C C4 DCW . . . V 2 29.587 54.93 -0.04 1 72.81 ? C4 DCW 201 J 1 HETATM 9 C C5 DCW . . . V 2 30.545 54.016 -0.802 1 73.27 ? C5 DCW 201 J 1 HETATM 10 C C6 DCW . . . V 2 31.149 52.907 0.069 1 71.42 ? C6 DCW 201 J 1 HETATM 11 C C8 DCW . . . V 2 32.426 58.437 4.224 1 79.84 ? C8 DCW 201 J 1 HETATM 12 C C9 DCW . . . V 2 31.759 59.344 3.194 1 81.96 ? C9 DCW 201 J 1 HETATM 13 C C13 DCW . . . V 2 32.102 58.949 5.629 1 79.76 ? C13 DCW 201 J 1 HETATM 14 C C10 DCW . . . V 2 32.163 60.815 3.35 1 83.66 ? C10 DCW 201 J 1 HETATM 15 C C11 DCW . . . V 2 33.017 61.078 4.594 1 82.8 ? C11 DCW 201 J 1 HETATM 16 C C12 DCW . . . V 2 32.402 60.434 5.832 1 81.23 ? C12 DCW 201 J 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #