data_3AP2 # _model_server_result.job_id 7SGES2kIQ0S3YQQw58a74g _model_server_result.datetime_utc '2024-11-15 04:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ap2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":360}' # _entry.id 3AP2 # _exptl.entry_id 3AP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AP2 _cell.length_a 138.379 _cell.length_b 138.379 _cell.length_c 228.547 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 96 1_555 A SG CYS 134 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 203 A CYS 225 1_555 A SG CYS 211 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 74 B CYS 96 1_555 B SG CYS 134 B CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 B SG CYS 203 B CYS 225 1_555 B SG CYS 211 B CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 3AP2 _atom_sites.fract_transf_matrix[1][1] 0.007227 _atom_sites.fract_transf_matrix[1][2] 0.004172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A3P A 1 1 1 A3P A3P . F 3 A3P B 1 1 1 A3P A3P . G 4 GOL B 1 360 1 GOL GOL . H 5 PO4 T 1 1 1 PO4 PO4 . I 6 HOH A 1 3 3 HOH HOH . I 6 HOH A 2 4 4 HOH HOH . I 6 HOH A 3 7 7 HOH HOH . I 6 HOH A 4 8 8 HOH HOH . I 6 HOH A 5 9 9 HOH HOH . I 6 HOH A 6 10 10 HOH HOH . I 6 HOH A 7 11 11 HOH HOH . I 6 HOH A 8 14 14 HOH HOH . I 6 HOH A 9 16 16 HOH HOH . I 6 HOH A 10 17 17 HOH HOH . I 6 HOH A 11 18 18 HOH HOH . I 6 HOH A 12 360 1 HOH HOH . I 6 HOH A 13 361 25 HOH HOH . I 6 HOH A 14 362 27 HOH HOH . I 6 HOH A 15 363 30 HOH HOH . I 6 HOH A 16 364 31 HOH HOH . I 6 HOH A 17 365 32 HOH HOH . I 6 HOH A 18 366 33 HOH HOH . I 6 HOH A 19 367 38 HOH HOH . I 6 HOH A 20 368 40 HOH HOH . I 6 HOH A 21 369 45 HOH HOH . I 6 HOH A 22 370 46 HOH HOH . I 6 HOH A 23 371 48 HOH HOH . I 6 HOH A 24 372 49 HOH HOH . I 6 HOH A 25 373 50 HOH HOH . I 6 HOH A 26 374 52 HOH HOH . I 6 HOH A 27 375 54 HOH HOH . J 6 HOH B 1 2 2 HOH HOH . J 6 HOH B 2 5 5 HOH HOH . J 6 HOH B 3 6 6 HOH HOH . J 6 HOH B 4 12 12 HOH HOH . J 6 HOH B 5 13 13 HOH HOH . J 6 HOH B 6 15 15 HOH HOH . J 6 HOH B 7 19 19 HOH HOH . J 6 HOH B 8 20 20 HOH HOH . J 6 HOH B 9 21 21 HOH HOH . J 6 HOH B 10 22 22 HOH HOH . J 6 HOH B 11 361 24 HOH HOH . J 6 HOH B 12 362 26 HOH HOH . J 6 HOH B 13 363 28 HOH HOH . J 6 HOH B 14 364 34 HOH HOH . J 6 HOH B 15 365 35 HOH HOH . J 6 HOH B 16 366 36 HOH HOH . J 6 HOH B 17 367 37 HOH HOH . J 6 HOH B 18 368 39 HOH HOH . J 6 HOH B 19 369 41 HOH HOH . J 6 HOH B 20 370 42 HOH HOH . J 6 HOH B 21 371 43 HOH HOH . J 6 HOH B 22 372 44 HOH HOH . J 6 HOH B 23 373 47 HOH HOH . J 6 HOH B 24 374 51 HOH HOH . J 6 HOH B 25 375 53 HOH HOH . K 6 HOH S 1 23 23 HOH HOH . K 6 HOH S 2 29 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -20.108 -5.095 52.024 1 39.09 ? C1 GOL 360 B 1 HETATM 2 O O1 GOL . . . G 4 -20.825 -6.11 52.707 1 40.83 ? O1 GOL 360 B 1 HETATM 3 C C2 GOL . . . G 4 -21.145 -4.186 51.346 1 39.39 ? C2 GOL 360 B 1 HETATM 4 O O2 GOL . . . G 4 -21.673 -4.707 50.125 1 36.46 ? O2 GOL 360 B 1 HETATM 5 C C3 GOL . . . G 4 -20.671 -2.744 51.183 1 34.93 ? C3 GOL 360 B 1 HETATM 6 O O3 GOL . . . G 4 -21.832 -2.076 50.742 1 32.07 ? O3 GOL 360 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #