data_3APD # _model_server_result.job_id z5dD7yGTgA4HyXfsMsh_Ww _model_server_result.datetime_utc '2024-12-21 18:05:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3apd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3APD # _exptl.entry_id 3APD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(2-Morpholin-4-yl-7-pyridin-3-yl-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl)-pyrimidin-2-ylamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.68 _cell.angle_gamma 90 _cell.entry_id 3APD _cell.length_a 142.95 _cell.length_b 67.46 _cell.length_c 106.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3APD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H20 N8 O' _chem_comp.formula_weight 376.415 _chem_comp.id MMY _chem_comp.mon_nstd_flag . _chem_comp.name 5-(2-Morpholin-4-yl-7-pyridin-3-yl-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl)-pyrimidin-2-ylamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMY doub 237 n y C1 C6 MMY sing 238 n y C2 C3 MMY sing 239 n y C3 N4 MMY doub 240 n y N4 C5 MMY sing 241 n y C5 C6 MMY doub 242 n y C6 N7 MMY sing 243 n n N7 C8 MMY sing 244 n n N7 C11 MMY sing 245 n n C8 C9 MMY sing 246 n n C9 C10 MMY sing 247 n n C10 C11 MMY sing 248 n y C10 C21 MMY doub 249 n y C11 N12 MMY doub 250 n y N12 C13 MMY sing 251 n y C13 N14 MMY sing 252 n n C13 N20 MMY doub 253 n y N14 C15 MMY sing 254 n n N14 C19 MMY sing 255 n n C15 C16 MMY sing 256 n n C16 O17 MMY sing 257 n n O17 C18 MMY sing 258 n n C18 C19 MMY sing 259 n n N20 C21 MMY sing 260 n y C21 C22 MMY sing 261 n y C22 C23 MMY doub 262 n y C22 C30 MMY sing 263 n y C23 N24 MMY sing 264 n y N24 C25 MMY doub 265 n y C25 N26 MMY sing 266 n n C25 N29 MMY sing 267 n y N29 C30 MMY doub 268 n y C1 H1 MMY sing 269 n n C2 H2 MMY sing 270 n n C3 H3 MMY sing 271 n n C5 H5 MMY sing 272 n n C8 H8 MMY sing 273 n n C8 H8A MMY sing 274 n n C9 H9 MMY sing 275 n n C9 H9A MMY sing 276 n n C15 H15 MMY sing 277 n n C15 H15A MMY sing 278 n n C16 H16 MMY sing 279 n n C16 H16A MMY sing 280 n n C18 H18 MMY sing 281 n n C18 H18A MMY sing 282 n n C19 H19 MMY sing 283 n n C19 H19A MMY sing 284 n n C23 H23 MMY sing 285 n n N26 HN26 MMY sing 286 n n N26 HN2A MMY sing 287 n n C30 H30 MMY sing 288 n n # _atom_sites.entry_id 3APD _atom_sites.fract_transf_matrix[1][1] 0.006995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000696 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMY A 1 1 1 MMY DRG . C 3 SO4 A 1 1103 1 SO4 SO4 . D 3 SO4 A 1 2 2 SO4 SO4 . E 4 HOH A 1 3 3 HOH HOH . E 4 HOH A 2 4 4 HOH HOH . E 4 HOH A 3 5 5 HOH HOH . E 4 HOH A 4 6 6 HOH HOH . E 4 HOH A 5 7 7 HOH HOH . E 4 HOH A 6 8 8 HOH HOH . E 4 HOH A 7 9 9 HOH HOH . E 4 HOH A 8 10 10 HOH HOH . E 4 HOH A 9 11 11 HOH HOH . E 4 HOH A 10 12 12 HOH HOH . E 4 HOH A 11 13 13 HOH HOH . E 4 HOH A 12 14 14 HOH HOH . E 4 HOH A 13 15 15 HOH HOH . E 4 HOH A 14 1104 1 HOH HOH . E 4 HOH A 15 1105 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMY . . . B 2 47.654 17.948 31.743 1 54.73 ? C1 MMY 1 A 1 HETATM 2 C C2 MMY . . . B 2 48.806 18.698 31.551 1 54.68 ? C2 MMY 1 A 1 HETATM 3 C C3 MMY . . . B 2 48.702 20.063 31.31 1 56.43 ? C3 MMY 1 A 1 HETATM 4 N N4 MMY . . . B 2 47.514 20.649 31.267 1 60.15 ? N4 MMY 1 A 1 HETATM 5 C C5 MMY . . . B 2 46.393 19.964 31.441 1 56.82 ? C5 MMY 1 A 1 HETATM 6 C C6 MMY . . . B 2 46.418 18.589 31.688 1 56.09 ? C6 MMY 1 A 1 HETATM 7 N N7 MMY . . . B 2 45.268 17.917 31.868 1 56.58 ? N7 MMY 1 A 1 HETATM 8 C C8 MMY . . . B 2 44.047 18.56 32.403 1 54.9 ? C8 MMY 1 A 1 HETATM 9 C C9 MMY . . . B 2 43.016 17.448 32.477 1 49.37 ? C9 MMY 1 A 1 HETATM 10 C C10 MMY . . . B 2 43.747 16.281 31.843 1 48.78 ? C10 MMY 1 A 1 HETATM 11 C C11 MMY . . . B 2 45.057 16.641 31.523 1 52.96 ? C11 MMY 1 A 1 HETATM 12 N N12 MMY . . . B 2 45.86 15.724 30.951 1 45.01 ? N12 MMY 1 A 1 HETATM 13 C C13 MMY . . . B 2 45.408 14.486 30.682 1 41.41 ? C13 MMY 1 A 1 HETATM 14 N N14 MMY . . . B 2 46.24 13.537 30.077 1 39.25 ? N14 MMY 1 A 1 HETATM 15 C C15 MMY . . . B 2 45.651 12.324 29.476 1 41.84 ? C15 MMY 1 A 1 HETATM 16 C C16 MMY . . . B 2 46.329 11.975 28.153 1 41.17 ? C16 MMY 1 A 1 HETATM 17 O O17 MMY . . . B 2 47.764 12.019 28.302 1 43.67 ? O17 MMY 1 A 1 HETATM 18 C C18 MMY . . . B 2 48.175 13.377 28.588 1 44.87 ? C18 MMY 1 A 1 HETATM 19 C C19 MMY . . . B 2 47.698 13.733 30 1 40.37 ? C19 MMY 1 A 1 HETATM 20 N N20 MMY . . . B 2 44.147 14.14 30.98 1 47.42 ? N20 MMY 1 A 1 HETATM 21 C C21 MMY . . . B 2 43.294 14.994 31.575 1 52.08 ? C21 MMY 1 A 1 HETATM 22 C C22 MMY . . . B 2 41.984 14.576 31.857 1 52.01 ? C22 MMY 1 A 1 HETATM 23 C C23 MMY . . . B 2 41.459 13.476 31.183 1 43.89 ? C23 MMY 1 A 1 HETATM 24 N N24 MMY . . . B 2 40.228 13.075 31.423 1 50.29 ? N24 MMY 1 A 1 HETATM 25 C C25 MMY . . . B 2 39.457 13.723 32.316 1 47.11 ? C25 MMY 1 A 1 HETATM 26 N N26 MMY . . . B 2 38.209 13.312 32.533 1 36.56 ? N26 MMY 1 A 1 HETATM 27 N N29 MMY . . . B 2 39.934 14.794 32.978 1 51.9 ? N29 MMY 1 A 1 HETATM 28 C C30 MMY . . . B 2 41.169 15.229 32.78 1 48.62 ? C30 MMY 1 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #