data_3APF
#
_model_server_result.job_id            y4967eO-Vw4lnvv-FAhO8A 
_model_server_result.datetime_utc      '2024-12-21 18:37:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3apf 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1103}' 
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_entry.id    3APF 
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_exptl.entry_id    3APF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              414.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[7-(1H-benzimidazol-5-yl)-2-(morpholin-4-yl)-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl]phenol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.38 
_cell.angle_gamma         90 
_cell.entry_id            3APF 
_cell.length_a            144.22 
_cell.length_b            67.87 
_cell.length_c            106.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3APF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H22 N6 O2' 
_chem_comp.formula_weight    414.46 
_chem_comp.id                BMW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[7-(1H-benzimidazol-5-yl)-2-(morpholin-4-yl)-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl]phenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BMW doub 70 n y 
C1 C10 BMW sing 71 n y 
C2 N3 BMW sing 72 n y 
C2 C7 BMW sing 73 n y 
N3 C5 BMW doub 74 n y 
C5 N6 BMW sing 75 n y 
N6 C7 BMW sing 76 n y 
C7 C8 BMW doub 77 n y 
C8 C9 BMW sing 78 n y 
C9 C10 BMW doub 79 n y 
C10 N11 BMW sing 80 n n 
N11 C12 BMW sing 81 n n 
N11 C15 BMW sing 82 n n 
C12 C13 BMW sing 83 n n 
C13 C14 BMW sing 84 n n 
C14 C15 BMW sing 85 n y 
C14 C25 BMW doub 86 n y 
C15 N16 BMW doub 87 n y 
N16 C17 BMW sing 88 n y 
C17 N18 BMW sing 89 n n 
C17 N24 BMW doub 90 n y 
N18 C19 BMW sing 91 n n 
N18 C23 BMW sing 92 n n 
C19 C20 BMW sing 93 n n 
C20 O21 BMW sing 94 n n 
O21 C22 BMW sing 95 n n 
C22 C23 BMW sing 96 n n 
N24 C25 BMW sing 97 n y 
C25 C26 BMW sing 98 n y 
C26 C27 BMW doub 99 n y 
C26 C28 BMW sing 100 n y 
C27 C31 BMW sing 101 n y 
C28 C29 BMW doub 102 n y 
C29 C30 BMW sing 103 n y 
C30 C31 BMW doub 104 n y 
C31 O32 BMW sing 105 n n 
C1 H1 BMW sing 106 n n 
C5 H5 BMW sing 107 n n 
N6 HN6 BMW sing 108 n n 
C8 H8 BMW sing 109 n n 
C9 H9 BMW sing 110 n n 
C12 H12 BMW sing 111 n n 
C12 H12A BMW sing 112 n n 
C13 H13 BMW sing 113 n n 
C13 H13A BMW sing 114 n n 
C19 H19 BMW sing 115 n n 
C19 H19A BMW sing 116 n n 
C20 H20 BMW sing 117 n n 
C20 H20A BMW sing 118 n n 
C22 H22 BMW sing 119 n n 
C22 H22A BMW sing 120 n n 
C23 H23 BMW sing 121 n n 
C23 H23A BMW sing 122 n n 
C27 H27 BMW sing 123 n n 
C28 H28 BMW sing 124 n n 
C29 H29 BMW sing 125 n n 
C30 H30 BMW sing 126 n n 
O32 HO32 BMW sing 127 n n 
#
_atom_sites.entry_id                     3APF 
_atom_sites.fract_transf_matrix[1][1]    0.006934 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000653 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014734 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1 1 SO4 SO4 . 
C 2 SO4 A 1 2 2 SO4 SO4 . 
D 3 BMW A 1 1103 1 BMW DRG . 
E 4 HOH A 1 3 3 HOH HOH . 
E 4 HOH A 2 1104 1 HOH HOH . 
E 4 HOH A 3 1105 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BMW . . . D 3 46.184 17.401 32.177 1 76.32 ? C1 BMW 1103 A 1 
HETATM 2 C C2 BMW . . . D 3 47.059 18.477 32.005 1 81.53 ? C2 BMW 1103 A 1 
HETATM 3 N N3 BMW . . . D 3 48.354 18.545 31.704 1 85.65 ? N3 BMW 1103 A 1 
HETATM 4 C C5 BMW . . . D 3 48.719 19.828 31.672 1 87.8 ? C5 BMW 1103 A 1 
HETATM 5 N N6 BMW . . . D 3 47.656 20.586 31.953 1 90.58 ? N6 BMW 1103 A 1 
HETATM 6 C C7 BMW . . . D 3 46.62 19.784 32.168 1 84.65 ? C7 BMW 1103 A 1 
HETATM 7 C C8 BMW . . . D 3 45.294 20.031 32.497 1 87.39 ? C8 BMW 1103 A 1 
HETATM 8 C C9 BMW . . . D 3 44.412 18.961 32.654 1 84 ? C9 BMW 1103 A 1 
HETATM 9 C C10 BMW . . . D 3 44.85 17.64 32.502 1 72.44 ? C10 BMW 1103 A 1 
HETATM 10 N N11 BMW . . . D 3 43.974 16.65 32.65 1 70.99 ? N11 BMW 1103 A 1 
HETATM 11 C C12 BMW . . . D 3 42.739 16.828 33.435 1 78.66 ? C12 BMW 1103 A 1 
HETATM 12 C C13 BMW . . . D 3 41.856 15.641 33.067 1 76.76 ? C13 BMW 1103 A 1 
HETATM 13 C C14 BMW . . . D 3 42.807 14.79 32.234 1 73.7 ? C14 BMW 1103 A 1 
HETATM 14 C C15 BMW . . . D 3 44.021 15.456 32.037 1 71.46 ? C15 BMW 1103 A 1 
HETATM 15 N N16 BMW . . . D 3 44.968 14.831 31.309 1 65.78 ? N16 BMW 1103 A 1 
HETATM 16 C C17 BMW . . . D 3 44.747 13.606 30.792 1 62.29 ? C17 BMW 1103 A 1 
HETATM 17 N N18 BMW . . . D 3 45.702 12.925 30.05 1 57.54 ? N18 BMW 1103 A 1 
HETATM 18 C C19 BMW . . . D 3 45.346 11.664 29.41 1 57.71 ? C19 BMW 1103 A 1 
HETATM 19 C C20 BMW . . . D 3 46.279 11.358 28.233 1 57.54 ? C20 BMW 1103 A 1 
HETATM 20 O O21 BMW . . . D 3 47.624 11.747 28.41 1 53.67 ? O21 BMW 1103 A 1 
HETATM 21 C C22 BMW . . . D 3 47.612 13.143 28.511 1 54.2 ? C22 BMW 1103 A 1 
HETATM 22 C C23 BMW . . . D 3 47.086 13.396 29.929 1 60.57 ? C23 BMW 1103 A 1 
HETATM 23 N N24 BMW . . . D 3 43.588 12.977 30.983 1 66.37 ? N24 BMW 1103 A 1 
HETATM 24 C C25 BMW . . . D 3 42.6 13.523 31.697 1 70.26 ? C25 BMW 1103 A 1 
HETATM 25 C C26 BMW . . . D 3 41.394 12.822 31.829 1 69.8 ? C26 BMW 1103 A 1 
HETATM 26 C C27 BMW . . . D 3 40.951 12.058 30.746 1 69.08 ? C27 BMW 1103 A 1 
HETATM 27 C C28 BMW . . . D 3 40.608 12.877 32.98 1 70.16 ? C28 BMW 1103 A 1 
HETATM 28 C C29 BMW . . . D 3 39.409 12.166 33.041 1 68.75 ? C29 BMW 1103 A 1 
HETATM 29 C C30 BMW . . . D 3 38.985 11.398 31.961 1 68.23 ? C30 BMW 1103 A 1 
HETATM 30 C C31 BMW . . . D 3 39.762 11.335 30.801 1 71.33 ? C31 BMW 1103 A 1 
HETATM 31 O O32 BMW . . . D 3 39.363 10.598 29.711 1 65.6 ? O32 BMW 1103 A 1 
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_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           590 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#