data_3APF # _model_server_result.job_id kD_V9qB110w5rwgVuc3BtA _model_server_result.datetime_utc '2024-12-09 22:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3apf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 3APF # _exptl.entry_id 3APF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.46 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[7-(1H-benzimidazol-5-yl)-2-(morpholin-4-yl)-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl]phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.38 _cell.angle_gamma 90 _cell.entry_id 3APF _cell.length_a 144.22 _cell.length_b 67.87 _cell.length_c 106.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3APF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H22 N6 O2' _chem_comp.formula_weight 414.46 _chem_comp.id BMW _chem_comp.mon_nstd_flag . _chem_comp.name 3-[7-(1H-benzimidazol-5-yl)-2-(morpholin-4-yl)-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMW doub 70 n y C1 C10 BMW sing 71 n y C2 N3 BMW sing 72 n y C2 C7 BMW sing 73 n y N3 C5 BMW doub 74 n y C5 N6 BMW sing 75 n y N6 C7 BMW sing 76 n y C7 C8 BMW doub 77 n y C8 C9 BMW sing 78 n y C9 C10 BMW doub 79 n y C10 N11 BMW sing 80 n n N11 C12 BMW sing 81 n n N11 C15 BMW sing 82 n n C12 C13 BMW sing 83 n n C13 C14 BMW sing 84 n n C14 C15 BMW sing 85 n y C14 C25 BMW doub 86 n y C15 N16 BMW doub 87 n y N16 C17 BMW sing 88 n y C17 N18 BMW sing 89 n n C17 N24 BMW doub 90 n y N18 C19 BMW sing 91 n n N18 C23 BMW sing 92 n n C19 C20 BMW sing 93 n n C20 O21 BMW sing 94 n n O21 C22 BMW sing 95 n n C22 C23 BMW sing 96 n n N24 C25 BMW sing 97 n y C25 C26 BMW sing 98 n y C26 C27 BMW doub 99 n y C26 C28 BMW sing 100 n y C27 C31 BMW sing 101 n y C28 C29 BMW doub 102 n y C29 C30 BMW sing 103 n y C30 C31 BMW doub 104 n y C31 O32 BMW sing 105 n n C1 H1 BMW sing 106 n n C5 H5 BMW sing 107 n n N6 HN6 BMW sing 108 n n C8 H8 BMW sing 109 n n C9 H9 BMW sing 110 n n C12 H12 BMW sing 111 n n C12 H12A BMW sing 112 n n C13 H13 BMW sing 113 n n C13 H13A BMW sing 114 n n C19 H19 BMW sing 115 n n C19 H19A BMW sing 116 n n C20 H20 BMW sing 117 n n C20 H20A BMW sing 118 n n C22 H22 BMW sing 119 n n C22 H22A BMW sing 120 n n C23 H23 BMW sing 121 n n C23 H23A BMW sing 122 n n C27 H27 BMW sing 123 n n C28 H28 BMW sing 124 n n C29 H29 BMW sing 125 n n C30 H30 BMW sing 126 n n O32 HO32 BMW sing 127 n n # _atom_sites.entry_id 3APF _atom_sites.fract_transf_matrix[1][1] 0.006934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000653 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 2 2 SO4 SO4 . D 3 BMW A 1 1103 1 BMW DRG . E 4 HOH A 1 3 3 HOH HOH . E 4 HOH A 2 1104 1 HOH HOH . E 4 HOH A 3 1105 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMW . . . D 3 46.184 17.401 32.177 1 76.32 ? C1 BMW 1103 A 1 HETATM 2 C C2 BMW . . . D 3 47.059 18.477 32.005 1 81.53 ? C2 BMW 1103 A 1 HETATM 3 N N3 BMW . . . D 3 48.354 18.545 31.704 1 85.65 ? N3 BMW 1103 A 1 HETATM 4 C C5 BMW . . . D 3 48.719 19.828 31.672 1 87.8 ? C5 BMW 1103 A 1 HETATM 5 N N6 BMW . . . D 3 47.656 20.586 31.953 1 90.58 ? N6 BMW 1103 A 1 HETATM 6 C C7 BMW . . . D 3 46.62 19.784 32.168 1 84.65 ? C7 BMW 1103 A 1 HETATM 7 C C8 BMW . . . D 3 45.294 20.031 32.497 1 87.39 ? C8 BMW 1103 A 1 HETATM 8 C C9 BMW . . . D 3 44.412 18.961 32.654 1 84 ? C9 BMW 1103 A 1 HETATM 9 C C10 BMW . . . D 3 44.85 17.64 32.502 1 72.44 ? C10 BMW 1103 A 1 HETATM 10 N N11 BMW . . . D 3 43.974 16.65 32.65 1 70.99 ? N11 BMW 1103 A 1 HETATM 11 C C12 BMW . . . D 3 42.739 16.828 33.435 1 78.66 ? C12 BMW 1103 A 1 HETATM 12 C C13 BMW . . . D 3 41.856 15.641 33.067 1 76.76 ? C13 BMW 1103 A 1 HETATM 13 C C14 BMW . . . D 3 42.807 14.79 32.234 1 73.7 ? C14 BMW 1103 A 1 HETATM 14 C C15 BMW . . . D 3 44.021 15.456 32.037 1 71.46 ? C15 BMW 1103 A 1 HETATM 15 N N16 BMW . . . D 3 44.968 14.831 31.309 1 65.78 ? N16 BMW 1103 A 1 HETATM 16 C C17 BMW . . . D 3 44.747 13.606 30.792 1 62.29 ? C17 BMW 1103 A 1 HETATM 17 N N18 BMW . . . D 3 45.702 12.925 30.05 1 57.54 ? N18 BMW 1103 A 1 HETATM 18 C C19 BMW . . . D 3 45.346 11.664 29.41 1 57.71 ? C19 BMW 1103 A 1 HETATM 19 C C20 BMW . . . D 3 46.279 11.358 28.233 1 57.54 ? C20 BMW 1103 A 1 HETATM 20 O O21 BMW . . . D 3 47.624 11.747 28.41 1 53.67 ? O21 BMW 1103 A 1 HETATM 21 C C22 BMW . . . D 3 47.612 13.143 28.511 1 54.2 ? C22 BMW 1103 A 1 HETATM 22 C C23 BMW . . . D 3 47.086 13.396 29.929 1 60.57 ? C23 BMW 1103 A 1 HETATM 23 N N24 BMW . . . D 3 43.588 12.977 30.983 1 66.37 ? N24 BMW 1103 A 1 HETATM 24 C C25 BMW . . . D 3 42.6 13.523 31.697 1 70.26 ? C25 BMW 1103 A 1 HETATM 25 C C26 BMW . . . D 3 41.394 12.822 31.829 1 69.8 ? C26 BMW 1103 A 1 HETATM 26 C C27 BMW . . . D 3 40.951 12.058 30.746 1 69.08 ? C27 BMW 1103 A 1 HETATM 27 C C28 BMW . . . D 3 40.608 12.877 32.98 1 70.16 ? C28 BMW 1103 A 1 HETATM 28 C C29 BMW . . . D 3 39.409 12.166 33.041 1 68.75 ? C29 BMW 1103 A 1 HETATM 29 C C30 BMW . . . D 3 38.985 11.398 31.961 1 68.23 ? C30 BMW 1103 A 1 HETATM 30 C C31 BMW . . . D 3 39.762 11.335 30.801 1 71.33 ? C31 BMW 1103 A 1 HETATM 31 O O32 BMW . . . D 3 39.363 10.598 29.711 1 65.6 ? O32 BMW 1103 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #