data_3APW # _model_server_result.job_id vAxEAUP8718kUj5ZkckoFA _model_server_result.datetime_utc '2024-11-22 01:10:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3apw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":190}' # _entry.id 3APW # _exptl.entry_id 3APW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Disopyramide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.69 _cell.angle_gamma 90 _cell.entry_id 3APW _cell.length_a 67.72 _cell.length_b 45.49 _cell.length_c 120.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3APW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 5 1_555 A SG CYS 148 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf2 A SG CYS 73 A CYS 72 1_555 A SG CYS 166 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 6 B CYS 5 1_555 B SG CYS 148 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 73 B CYS 72 1_555 B SG CYS 166 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C21 H29 N3 O' _chem_comp.formula_weight 339.474 _chem_comp.id DP0 _chem_comp.mon_nstd_flag . _chem_comp.name Disopyramide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2S)-4-(dipropan-2-ylamino)-2-phenyl-2-(pyridin-2-yl)butanamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DP0 sing 83 n n C1 C6 DP0 sing 84 n n C1 C7 DP0 sing 85 n n C1 C8 DP0 sing 86 n n O1 C8 DP0 doub 87 n n C2 C3 DP0 sing 88 n n N2 C3 DP0 sing 89 n n N2 C4 DP0 sing 90 n n N2 C5 DP0 sing 91 n n N3 C7 DP0 doub 92 n y N3 C20 DP0 sing 93 n y C4 C9 DP0 sing 94 n n C4 C10 DP0 sing 95 n n N4 C8 DP0 sing 96 n n C5 C11 DP0 sing 97 n n C5 C12 DP0 sing 98 n n C6 C13 DP0 doub 99 n y C6 C14 DP0 sing 100 n y C7 C15 DP0 sing 101 n y C13 C16 DP0 sing 102 n y C14 C17 DP0 doub 103 n y C15 C18 DP0 doub 104 n y C16 C19 DP0 doub 105 n y C17 C19 DP0 sing 106 n y C18 C21 DP0 sing 107 n y C20 C21 DP0 doub 108 n y C2 H2 DP0 sing 109 n n C2 H2A DP0 sing 110 n n C3 H3 DP0 sing 111 n n C3 H3A DP0 sing 112 n n C4 H4 DP0 sing 113 n n N4 HN4 DP0 sing 114 n n N4 HN4A DP0 sing 115 n n C5 H5 DP0 sing 116 n n C9 H9 DP0 sing 117 n n C9 H9A DP0 sing 118 n n C9 H9B DP0 sing 119 n n C10 H10 DP0 sing 120 n n C10 H10A DP0 sing 121 n n C10 H10B DP0 sing 122 n n C11 H11 DP0 sing 123 n n C11 H11A DP0 sing 124 n n C11 H11B DP0 sing 125 n n C12 H12 DP0 sing 126 n n C12 H12A DP0 sing 127 n n C12 H12B DP0 sing 128 n n C13 H13 DP0 sing 129 n n C14 H14 DP0 sing 130 n n C15 H15 DP0 sing 131 n n C16 H16 DP0 sing 132 n n C17 H17 DP0 sing 133 n n C18 H18 DP0 sing 134 n n C19 H19 DP0 sing 135 n n C20 H20 DP0 sing 136 n n C21 H21 DP0 sing 137 n n # _atom_sites.entry_id 3APW _atom_sites.fract_transf_matrix[1][1] 0.014767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000436 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DP0 A 1 190 1 DP0 DP0 . D 2 DP0 B 1 190 2 DP0 DP0 . E 3 HOH A 1 191 1 HOH HOH . E 3 HOH A 2 192 2 HOH HOH . E 3 HOH A 3 193 3 HOH HOH . E 3 HOH A 4 194 4 HOH HOH . E 3 HOH A 5 195 5 HOH HOH . E 3 HOH A 6 196 6 HOH HOH . E 3 HOH A 7 197 8 HOH HOH . E 3 HOH A 8 198 11 HOH HOH . E 3 HOH A 9 199 12 HOH HOH . E 3 HOH A 10 200 13 HOH HOH . E 3 HOH A 11 201 14 HOH HOH . E 3 HOH A 12 202 16 HOH HOH . E 3 HOH A 13 203 17 HOH HOH . E 3 HOH A 14 204 18 HOH HOH . E 3 HOH A 15 205 21 HOH HOH . E 3 HOH A 16 206 22 HOH HOH . E 3 HOH A 17 207 23 HOH HOH . E 3 HOH A 18 208 26 HOH HOH . E 3 HOH A 19 209 28 HOH HOH . E 3 HOH A 20 210 29 HOH HOH . E 3 HOH A 21 211 30 HOH HOH . E 3 HOH A 22 212 32 HOH HOH . E 3 HOH A 23 213 33 HOH HOH . E 3 HOH A 24 214 35 HOH HOH . E 3 HOH A 25 215 36 HOH HOH . E 3 HOH A 26 216 37 HOH HOH . E 3 HOH A 27 217 38 HOH HOH . E 3 HOH A 28 218 39 HOH HOH . E 3 HOH A 29 219 40 HOH HOH . E 3 HOH A 30 220 42 HOH HOH . E 3 HOH A 31 221 43 HOH HOH . E 3 HOH A 32 222 47 HOH HOH . E 3 HOH A 33 223 50 HOH HOH . E 3 HOH A 34 224 53 HOH HOH . E 3 HOH A 35 225 54 HOH HOH . E 3 HOH A 36 226 59 HOH HOH . E 3 HOH A 37 227 60 HOH HOH . E 3 HOH A 38 228 62 HOH HOH . E 3 HOH A 39 229 65 HOH HOH . E 3 HOH A 40 230 66 HOH HOH . E 3 HOH A 41 231 67 HOH HOH . E 3 HOH A 42 232 69 HOH HOH . E 3 HOH A 43 233 71 HOH HOH . E 3 HOH A 44 234 72 HOH HOH . E 3 HOH A 45 235 74 HOH HOH . E 3 HOH A 46 236 75 HOH HOH . E 3 HOH A 47 237 76 HOH HOH . E 3 HOH A 48 238 77 HOH HOH . E 3 HOH A 49 239 78 HOH HOH . E 3 HOH A 50 240 79 HOH HOH . E 3 HOH A 51 241 80 HOH HOH . E 3 HOH A 52 242 81 HOH HOH . E 3 HOH A 53 243 82 HOH HOH . E 3 HOH A 54 244 83 HOH HOH . E 3 HOH A 55 245 84 HOH HOH . E 3 HOH A 56 246 93 HOH HOH . E 3 HOH A 57 247 94 HOH HOH . E 3 HOH A 58 248 101 HOH HOH . E 3 HOH A 59 249 102 HOH HOH . E 3 HOH A 60 250 103 HOH HOH . E 3 HOH A 61 251 104 HOH HOH . E 3 HOH A 62 252 105 HOH HOH . E 3 HOH A 63 253 107 HOH HOH . E 3 HOH A 64 254 109 HOH HOH . E 3 HOH A 65 255 110 HOH HOH . E 3 HOH A 66 256 27 HOH HOH . F 3 HOH B 1 191 9 HOH HOH . F 3 HOH B 2 192 10 HOH HOH . F 3 HOH B 3 194 31 HOH HOH . F 3 HOH B 4 195 49 HOH HOH . F 3 HOH B 5 196 55 HOH HOH . F 3 HOH B 6 197 57 HOH HOH . F 3 HOH B 7 198 106 HOH HOH . F 3 HOH B 8 199 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DP0 . . . D 2 13.251 0.828 42.456 1 51.27 ? C1 DP0 190 B 1 HETATM 2 O O1 DP0 . . . D 2 13.274 1.839 44.65 1 48.54 ? O1 DP0 190 B 1 HETATM 3 C C2 DP0 . . . D 2 13.865 1.889 41.547 1 51.33 ? C2 DP0 190 B 1 HETATM 4 N N2 DP0 . . . D 2 13.986 4.243 41.033 1 54.02 ? N2 DP0 190 B 1 HETATM 5 C C3 DP0 . . . D 2 13.723 3.295 42.119 1 51.53 ? C3 DP0 190 B 1 HETATM 6 N N3 DP0 . . . D 2 11.171 1.351 41.196 1 50.69 ? N3 DP0 190 B 1 HETATM 7 C C4 DP0 . . . D 2 12.687 4.827 40.589 1 55.3 ? C4 DP0 190 B 1 HETATM 8 N N4 DP0 . . . D 2 14.95 0.462 44.171 1 48.09 ? N4 DP0 190 B 1 HETATM 9 C C5 DP0 . . . D 2 15.114 5.147 41.365 1 54.5 ? C5 DP0 190 B 1 HETATM 10 C C6 DP0 . . . D 2 13.666 -0.529 41.943 1 52.26 ? C6 DP0 190 B 1 HETATM 11 C C7 DP0 . . . D 2 11.736 0.935 42.361 1 50.74 ? C7 DP0 190 B 1 HETATM 12 C C8 DP0 . . . D 2 13.813 1.078 43.857 1 49.95 ? C8 DP0 190 B 1 HETATM 13 C C9 DP0 . . . D 2 12.413 6.273 41.015 1 55.54 ? C9 DP0 190 B 1 HETATM 14 C C10 DP0 . . . D 2 12.571 4.604 39.079 1 54.89 ? C10 DP0 190 B 1 HETATM 15 C C11 DP0 . . . D 2 16.427 4.361 41.241 1 51.92 ? C11 DP0 190 B 1 HETATM 16 C C12 DP0 . . . D 2 14.963 5.78 42.754 1 54.59 ? C12 DP0 190 B 1 HETATM 17 C C13 DP0 . . . D 2 14.695 -0.647 41.006 1 54.1 ? C13 DP0 190 B 1 HETATM 18 C C14 DP0 . . . D 2 13.044 -1.691 42.398 1 53.38 ? C14 DP0 190 B 1 HETATM 19 C C15 DP0 . . . D 2 10.898 0.602 43.433 1 50.06 ? C15 DP0 190 B 1 HETATM 20 C C16 DP0 . . . D 2 15.095 -1.899 40.528 1 54.68 ? C16 DP0 190 B 1 HETATM 21 C C17 DP0 . . . D 2 13.443 -2.948 41.923 1 54.23 ? C17 DP0 190 B 1 HETATM 22 C C18 DP0 . . . D 2 9.522 0.711 43.29 1 50.07 ? C18 DP0 190 B 1 HETATM 23 C C19 DP0 . . . D 2 14.471 -3.053 40.987 1 53.91 ? C19 DP0 190 B 1 HETATM 24 C C20 DP0 . . . D 2 9.841 1.467 41.04 1 49.55 ? C20 DP0 190 B 1 HETATM 25 C C21 DP0 . . . D 2 8.986 1.142 42.085 1 49.78 ? C21 DP0 190 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #