data_3AQN # _model_server_result.job_id SytOKYGNlasNeLNNLF4x4g _model_server_result.datetime_utc '2025-08-31 04:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3AQN # _exptl.entry_id 3AQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AQN _cell.length_a 132.4 _cell.length_b 132.4 _cell.length_c 176.291 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 92 A GLU 108 1_555 D MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc2 A OE2 GLU 92 A GLU 108 1_555 D MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc3 C O1A ATP . A ATP 501 1_555 D MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc4 E O5' ATP . B ATP 502 1_555 F MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3AQN _atom_sites.fract_transf_matrix[1][1] 0.007553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 501 501 ATP ATP . D 3 MG A 1 600 600 MG MG . E 2 ATP B 1 502 502 ATP ATP . F 3 MG B 1 601 601 MG MG . G 4 HOH A 1 455 455 HOH HOH . G 4 HOH A 2 456 456 HOH HOH . G 4 HOH A 3 457 457 HOH HOH . H 4 HOH B 1 455 455 HOH HOH . H 4 HOH B 2 456 456 HOH HOH . H 4 HOH B 3 457 457 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 -45.486 -13.876 -23.046 1 238.16 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . C 2 -44.235 -14.34 -23.767 1 238.11 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . C 2 -45.676 -12.371 -23.055 1 237.62 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . C 2 -45.689 -14.511 -21.677 1 237.89 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . C 2 -47.442 -15.878 -23.939 1 240.55 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . C 2 -46.934 -16.694 -25.122 1 240.56 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . C 2 -47.368 -16.453 -22.529 1 240.55 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . C 2 -46.715 -14.414 -23.974 1 239.63 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . C 2 -50.351 -16.239 -24.038 1 242.05 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . C 2 -50.578 -16.489 -22.555 1 242.02 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . C 2 -51.425 -15.537 -24.853 1 242.25 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . C 2 -48.974 -15.389 -24.226 1 241.43 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . C 2 -50.06 -17.638 -24.791 1 240.82 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . C 2 -49.494 -17.598 -26.098 1 238.34 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . C 2 -49.726 -18.89 -26.871 1 236.37 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . C 2 -51.081 -18.966 -27.36 1 235.97 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . C 2 -48.804 -18.89 -28.076 1 235.47 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . C 2 -47.987 -20.072 -28.083 1 234.04 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . C 2 -49.727 -18.827 -29.283 1 235.52 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . C 2 -49.252 -19.74 -30.265 1 236.51 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . C 2 -51.121 -19.198 -28.777 1 235.67 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . C 2 -52.193 -18.372 -29.422 1 235.9 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . C 2 -52.927 -17.423 -28.798 1 235.72 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . C 2 -53.825 -16.834 -29.633 1 235.96 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . C 2 -53.682 -17.413 -30.849 1 236.51 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . C 2 -54.316 -17.262 -32.198 1 236.48 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . C 2 -55.309 -16.358 -32.425 1 235.75 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . C 2 -53.871 -18.061 -33.201 1 236.94 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . C 2 -52.889 -18.966 -32.999 1 237.54 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . C 2 -52.275 -19.153 -31.809 1 237.62 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . C 2 -52.611 -18.426 -30.704 1 236.68 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #