data_3AQV # _model_server_result.job_id X5TWP50zVRNEhrCN8-Qttg _model_server_result.datetime_utc '2024-11-14 09:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3AQV # _exptl.entry_id 3AQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AQV _cell.length_a 70.476 _cell.length_b 70.476 _cell.length_c 130.508 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H25 N5 O' _chem_comp.formula_weight 399.488 _chem_comp.id TAK _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dorsomorphin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TAK sing 290 n n C1 N1 TAK sing 291 n n C2 C3 TAK sing 292 n n C3 C4 TAK sing 293 n n C4 C5 TAK sing 294 n n C5 N1 TAK sing 295 n n N1 C6 TAK sing 296 n n C6 C7 TAK sing 297 n n C7 O1 TAK sing 298 n n O1 C8 TAK sing 299 n n C8 C9 TAK doub 300 n y C8 C11 TAK sing 301 n y C9 C10 TAK sing 302 n y C10 C13 TAK doub 303 n y C11 C12 TAK doub 304 n y C12 C13 TAK sing 305 n y C13 C14 TAK sing 306 n y C14 C15 TAK doub 307 n y C14 C16 TAK sing 308 n y C15 N3 TAK sing 309 n y C16 N2 TAK doub 310 n y N2 C17 TAK sing 311 n y C17 N3 TAK sing 312 n y C17 C19 TAK doub 313 n y N3 N4 TAK sing 314 n y N4 C18 TAK doub 315 n y C18 C19 TAK sing 316 n y C19 C20 TAK sing 317 n y C20 C21 TAK doub 318 n y C20 C24 TAK sing 319 n y C21 C22 TAK sing 320 n y C22 N5 TAK doub 321 n y N5 C23 TAK sing 322 n y C23 C24 TAK doub 323 n y C1 H1 TAK sing 324 n n C1 H1A TAK sing 325 n n C2 H2 TAK sing 326 n n C2 H2A TAK sing 327 n n C3 H3 TAK sing 328 n n C3 H3A TAK sing 329 n n C4 H4 TAK sing 330 n n C4 H4A TAK sing 331 n n C5 H5 TAK sing 332 n n C5 H5A TAK sing 333 n n C6 H6 TAK sing 334 n n C6 H6A TAK sing 335 n n C7 H7 TAK sing 336 n n C7 H7A TAK sing 337 n n C9 H9 TAK sing 338 n n C10 H10 TAK sing 339 n n C11 H11 TAK sing 340 n n C12 H12 TAK sing 341 n n C15 H15 TAK sing 342 n n C16 H16 TAK sing 343 n n C18 H18 TAK sing 344 n n C21 H21 TAK sing 345 n n C22 H22 TAK sing 346 n n C23 H23 TAK sing 347 n n C24 H24 TAK sing 348 n n # _atom_sites.entry_id 3AQV _atom_sites.fract_transf_matrix[1][1] 0.014189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TAK A 1 1 1 TAK TAK . C 3 HOH A 1 280 280 HOH HOH . C 3 HOH A 2 281 281 HOH HOH . C 3 HOH A 3 282 282 HOH HOH . C 3 HOH A 4 283 283 HOH HOH . C 3 HOH A 5 284 284 HOH HOH . C 3 HOH A 6 285 285 HOH HOH . C 3 HOH A 7 286 286 HOH HOH . C 3 HOH A 8 287 287 HOH HOH . C 3 HOH A 9 288 288 HOH HOH . C 3 HOH A 10 289 289 HOH HOH . C 3 HOH A 11 290 290 HOH HOH . C 3 HOH A 12 291 291 HOH HOH . C 3 HOH A 13 292 292 HOH HOH . C 3 HOH A 14 293 293 HOH HOH . C 3 HOH A 15 294 294 HOH HOH . C 3 HOH A 16 295 295 HOH HOH . C 3 HOH A 17 296 296 HOH HOH . C 3 HOH A 18 297 297 HOH HOH . C 3 HOH A 19 298 298 HOH HOH . C 3 HOH A 20 299 299 HOH HOH . C 3 HOH A 21 300 300 HOH HOH . C 3 HOH A 22 301 301 HOH HOH . C 3 HOH A 23 302 302 HOH HOH . C 3 HOH A 24 303 303 HOH HOH . C 3 HOH A 25 304 304 HOH HOH . C 3 HOH A 26 305 305 HOH HOH . C 3 HOH A 27 306 306 HOH HOH . C 3 HOH A 28 307 307 HOH HOH . C 3 HOH A 29 308 308 HOH HOH . C 3 HOH A 30 309 309 HOH HOH . C 3 HOH A 31 310 310 HOH HOH . C 3 HOH A 32 311 311 HOH HOH . C 3 HOH A 33 312 312 HOH HOH . C 3 HOH A 34 313 313 HOH HOH . C 3 HOH A 35 314 314 HOH HOH . C 3 HOH A 36 315 315 HOH HOH . C 3 HOH A 37 316 316 HOH HOH . C 3 HOH A 38 317 317 HOH HOH . C 3 HOH A 39 318 318 HOH HOH . C 3 HOH A 40 319 319 HOH HOH . C 3 HOH A 41 320 320 HOH HOH . C 3 HOH A 42 321 321 HOH HOH . C 3 HOH A 43 322 322 HOH HOH . C 3 HOH A 44 323 323 HOH HOH . C 3 HOH A 45 324 324 HOH HOH . C 3 HOH A 46 325 325 HOH HOH . C 3 HOH A 47 326 326 HOH HOH . C 3 HOH A 48 327 327 HOH HOH . C 3 HOH A 49 328 328 HOH HOH . C 3 HOH A 50 329 329 HOH HOH . C 3 HOH A 51 330 330 HOH HOH . C 3 HOH A 52 331 331 HOH HOH . C 3 HOH A 53 332 332 HOH HOH . C 3 HOH A 54 333 333 HOH HOH . C 3 HOH A 55 334 334 HOH HOH . C 3 HOH A 56 335 335 HOH HOH . C 3 HOH A 57 336 336 HOH HOH . C 3 HOH A 58 337 337 HOH HOH . C 3 HOH A 59 338 338 HOH HOH . C 3 HOH A 60 339 339 HOH HOH . C 3 HOH A 61 340 340 HOH HOH . C 3 HOH A 62 341 341 HOH HOH . C 3 HOH A 63 342 342 HOH HOH . C 3 HOH A 64 343 343 HOH HOH . C 3 HOH A 65 344 344 HOH HOH . C 3 HOH A 66 345 345 HOH HOH . C 3 HOH A 67 346 346 HOH HOH . C 3 HOH A 68 347 347 HOH HOH . C 3 HOH A 69 348 348 HOH HOH . C 3 HOH A 70 349 349 HOH HOH . C 3 HOH A 71 350 350 HOH HOH . C 3 HOH A 72 351 351 HOH HOH . C 3 HOH A 73 352 352 HOH HOH . C 3 HOH A 74 353 353 HOH HOH . C 3 HOH A 75 354 354 HOH HOH . C 3 HOH A 76 355 355 HOH HOH . C 3 HOH A 77 356 356 HOH HOH . C 3 HOH A 78 357 357 HOH HOH . C 3 HOH A 79 358 358 HOH HOH . C 3 HOH A 80 359 359 HOH HOH . C 3 HOH A 81 360 360 HOH HOH . C 3 HOH A 82 361 361 HOH HOH . C 3 HOH A 83 362 362 HOH HOH . C 3 HOH A 84 363 363 HOH HOH . C 3 HOH A 85 364 364 HOH HOH . C 3 HOH A 86 365 365 HOH HOH . C 3 HOH A 87 366 366 HOH HOH . C 3 HOH A 88 367 367 HOH HOH . C 3 HOH A 89 368 368 HOH HOH . C 3 HOH A 90 369 369 HOH HOH . C 3 HOH A 91 370 370 HOH HOH . C 3 HOH A 92 371 371 HOH HOH . C 3 HOH A 93 372 372 HOH HOH . C 3 HOH A 94 373 373 HOH HOH . C 3 HOH A 95 374 374 HOH HOH . C 3 HOH A 96 375 375 HOH HOH . C 3 HOH A 97 376 376 HOH HOH . C 3 HOH A 98 377 377 HOH HOH . C 3 HOH A 99 378 378 HOH HOH . C 3 HOH A 100 379 379 HOH HOH . C 3 HOH A 101 380 380 HOH HOH . C 3 HOH A 102 381 381 HOH HOH . C 3 HOH A 103 382 382 HOH HOH . C 3 HOH A 104 383 383 HOH HOH . C 3 HOH A 105 384 384 HOH HOH . C 3 HOH A 106 385 385 HOH HOH . C 3 HOH A 107 386 386 HOH HOH . C 3 HOH A 108 387 387 HOH HOH . C 3 HOH A 109 388 388 HOH HOH . C 3 HOH A 110 389 389 HOH HOH . C 3 HOH A 111 390 390 HOH HOH . C 3 HOH A 112 391 391 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TAK . . . B 2 -9.176 39.467 3.865 1 56.36 ? C1 TAK 1 A 1 HETATM 2 C C2 TAK . . . B 2 -8.612 39.02 2.511 1 54.84 ? C2 TAK 1 A 1 HETATM 3 C C3 TAK . . . B 2 -8.368 37.497 2.504 1 57.52 ? C3 TAK 1 A 1 HETATM 4 C C4 TAK . . . B 2 -8.862 36.875 3.837 1 56.97 ? C4 TAK 1 A 1 HETATM 5 C C5 TAK . . . B 2 -10.301 37.328 4.165 1 56.47 ? C5 TAK 1 A 1 HETATM 6 N N1 TAK . . . B 2 -10.477 38.815 4.148 1 54.49 ? N1 TAK 1 A 1 HETATM 7 C C6 TAK . . . B 2 -11.185 39.254 5.388 1 53.11 ? C6 TAK 1 A 1 HETATM 8 C C7 TAK . . . B 2 -10.841 40.706 5.888 1 49.49 ? C7 TAK 1 A 1 HETATM 9 O O1 TAK . . . B 2 -9.735 40.656 6.895 1 49.16 ? O1 TAK 1 A 1 HETATM 10 C C8 TAK . . . B 2 -9.253 41.874 7.343 1 43.54 ? C8 TAK 1 A 1 HETATM 11 C C9 TAK . . . B 2 -10.023 43.051 7.279 1 40.54 ? C9 TAK 1 A 1 HETATM 12 C C10 TAK . . . B 2 -9.457 44.251 7.747 1 39.23 ? C10 TAK 1 A 1 HETATM 13 C C11 TAK . . . B 2 -7.972 41.902 7.889 1 42.22 ? C11 TAK 1 A 1 HETATM 14 C C12 TAK . . . B 2 -7.419 43.091 8.343 1 40.41 ? C12 TAK 1 A 1 HETATM 15 C C13 TAK . . . B 2 -8.182 44.276 8.318 1 37.14 ? C13 TAK 1 A 1 HETATM 16 C C14 TAK . . . B 2 -7.595 45.478 8.752 1 34.37 ? C14 TAK 1 A 1 HETATM 17 C C15 TAK . . . B 2 -8.165 46.748 8.528 1 32.42 ? C15 TAK 1 A 1 HETATM 18 C C16 TAK . . . B 2 -6.368 45.45 9.34 1 33.17 ? C16 TAK 1 A 1 HETATM 19 N N2 TAK . . . B 2 -5.766 46.555 9.751 1 31.62 ? N2 TAK 1 A 1 HETATM 20 C C17 TAK . . . B 2 -6.297 47.775 9.575 1 24.83 ? C17 TAK 1 A 1 HETATM 21 N N3 TAK . . . B 2 -7.533 47.891 8.984 1 29.73 ? N3 TAK 1 A 1 HETATM 22 N N4 TAK . . . B 2 -7.835 49.116 8.907 1 28.57 ? N4 TAK 1 A 1 HETATM 23 C C18 TAK . . . B 2 -6.855 49.894 9.423 1 26.62 ? C18 TAK 1 A 1 HETATM 24 C C19 TAK . . . B 2 -5.883 49.077 9.888 1 25.39 ? C19 TAK 1 A 1 HETATM 25 C C20 TAK . . . B 2 -4.652 49.501 10.484 1 25.63 ? C20 TAK 1 A 1 HETATM 26 C C21 TAK . . . B 2 -4.438 50.858 10.722 1 22.3 ? C21 TAK 1 A 1 HETATM 27 C C22 TAK . . . B 2 -3.247 51.38 11.244 1 27.07 ? C22 TAK 1 A 1 HETATM 28 N N5 TAK . . . B 2 -2.284 50.534 11.553 1 24.6 ? N5 TAK 1 A 1 HETATM 29 C C23 TAK . . . B 2 -2.415 49.23 11.349 1 24.22 ? C23 TAK 1 A 1 HETATM 30 C C24 TAK . . . B 2 -3.578 48.659 10.802 1 26.5 ? C24 TAK 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #