data_3AR5 # _model_server_result.job_id s-IKXtMbZ9w70oG4u4NYQA _model_server_result.datetime_utc '2024-11-06 22:46:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ar5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 3AR5 # _exptl.entry_id 3AR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AR5 _cell.length_a 71.683 _cell.length_b 71.683 _cell.length_c 589.075 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A OE1 GLN 245 A GLN 244 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc2 A O LEU 712 A LEU 711 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc3 A O LYS 713 A LYS 712 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc4 A O ALA 715 A ALA 714 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 A OE1 GLU 733 A GLU 732 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc6 B NA NA . A NA 1000 1_555 H O HOH . A HOH 2166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AR5 _atom_sites.fract_transf_matrix[1][1] 0.01395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1000 1000 NA NA . C 3 TG1 A 1 1003 1003 TG1 TG1 . D 4 TM1 A 1 1002 1002 TM1 TM1 . E 5 PTY A 1 1011 1011 PTY PTY . F 5 PTY A 1 1013 1013 PTY PTY . G 5 PTY A 1 1012 1012 PTY PTY . H 6 HOH A 1 2001 2001 HOH HOH . H 6 HOH A 2 2008 2008 HOH HOH . H 6 HOH A 3 2011 2011 HOH HOH . H 6 HOH A 4 2012 2012 HOH HOH . H 6 HOH A 5 2017 2017 HOH HOH . H 6 HOH A 6 2019 2019 HOH HOH . H 6 HOH A 7 2022 2022 HOH HOH . H 6 HOH A 8 2023 2023 HOH HOH . H 6 HOH A 9 2024 2024 HOH HOH . H 6 HOH A 10 2026 2026 HOH HOH . H 6 HOH A 11 2027 2027 HOH HOH . H 6 HOH A 12 2031 2031 HOH HOH . H 6 HOH A 13 2034 2034 HOH HOH . H 6 HOH A 14 2038 2038 HOH HOH . H 6 HOH A 15 2041 2041 HOH HOH . H 6 HOH A 16 2042 2042 HOH HOH . H 6 HOH A 17 2043 2043 HOH HOH . H 6 HOH A 18 2044 2044 HOH HOH . H 6 HOH A 19 2045 2045 HOH HOH . H 6 HOH A 20 2046 2046 HOH HOH . H 6 HOH A 21 2048 2048 HOH HOH . H 6 HOH A 22 2049 2049 HOH HOH . H 6 HOH A 23 2050 2050 HOH HOH . H 6 HOH A 24 2054 2054 HOH HOH . H 6 HOH A 25 2059 2059 HOH HOH . H 6 HOH A 26 2061 2061 HOH HOH . H 6 HOH A 27 2062 2062 HOH HOH . H 6 HOH A 28 2063 2063 HOH HOH . H 6 HOH A 29 2064 2064 HOH HOH . H 6 HOH A 30 2067 2067 HOH HOH . H 6 HOH A 31 2068 2068 HOH HOH . H 6 HOH A 32 2070 2070 HOH HOH . H 6 HOH A 33 2071 2071 HOH HOH . H 6 HOH A 34 2074 2074 HOH HOH . H 6 HOH A 35 2075 2075 HOH HOH . H 6 HOH A 36 2079 2079 HOH HOH . H 6 HOH A 37 2080 2080 HOH HOH . H 6 HOH A 38 2082 2082 HOH HOH . H 6 HOH A 39 2083 2083 HOH HOH . H 6 HOH A 40 2084 2084 HOH HOH . H 6 HOH A 41 2085 2085 HOH HOH . H 6 HOH A 42 2088 2088 HOH HOH . H 6 HOH A 43 2090 2090 HOH HOH . H 6 HOH A 44 2091 2091 HOH HOH . H 6 HOH A 45 2094 2094 HOH HOH . H 6 HOH A 46 2097 2097 HOH HOH . H 6 HOH A 47 2098 2098 HOH HOH . H 6 HOH A 48 2100 2100 HOH HOH . H 6 HOH A 49 2101 2101 HOH HOH . H 6 HOH A 50 2102 2102 HOH HOH . H 6 HOH A 51 2103 2103 HOH HOH . H 6 HOH A 52 2104 2104 HOH HOH . H 6 HOH A 53 2105 2105 HOH HOH . H 6 HOH A 54 2107 2107 HOH HOH . H 6 HOH A 55 2108 2108 HOH HOH . H 6 HOH A 56 2110 2110 HOH HOH . H 6 HOH A 57 2112 2112 HOH HOH . H 6 HOH A 58 2113 2113 HOH HOH . H 6 HOH A 59 2116 2116 HOH HOH . H 6 HOH A 60 2117 2117 HOH HOH . H 6 HOH A 61 2119 2119 HOH HOH . H 6 HOH A 62 2121 2121 HOH HOH . H 6 HOH A 63 2124 2124 HOH HOH . H 6 HOH A 64 2126 2126 HOH HOH . H 6 HOH A 65 2129 2129 HOH HOH . H 6 HOH A 66 2130 2130 HOH HOH . H 6 HOH A 67 2134 2134 HOH HOH . H 6 HOH A 68 2135 2135 HOH HOH . H 6 HOH A 69 2144 2144 HOH HOH . H 6 HOH A 70 2145 2145 HOH HOH . H 6 HOH A 71 2146 2146 HOH HOH . H 6 HOH A 72 2154 2154 HOH HOH . H 6 HOH A 73 2155 2155 HOH HOH . H 6 HOH A 74 2156 2156 HOH HOH . H 6 HOH A 75 2157 2157 HOH HOH . H 6 HOH A 76 2166 2166 HOH HOH . H 6 HOH A 77 2173 2173 HOH HOH . H 6 HOH A 78 2174 2174 HOH HOH . H 6 HOH A 79 2175 2175 HOH HOH . H 6 HOH A 80 2177 2177 HOH HOH . H 6 HOH A 81 2178 2178 HOH HOH . H 6 HOH A 82 2181 2181 HOH HOH . H 6 HOH A 83 2185 2185 HOH HOH . H 6 HOH A 84 2186 2186 HOH HOH . H 6 HOH A 85 2195 2195 HOH HOH . H 6 HOH A 86 2198 2198 HOH HOH . H 6 HOH A 87 2202 2202 HOH HOH . H 6 HOH A 88 2206 2206 HOH HOH . H 6 HOH A 89 2208 2208 HOH HOH . H 6 HOH A 90 2211 2211 HOH HOH . H 6 HOH A 91 2213 2213 HOH HOH . H 6 HOH A 92 2218 2218 HOH HOH . H 6 HOH A 93 2219 2219 HOH HOH . H 6 HOH A 94 2220 2220 HOH HOH . H 6 HOH A 95 2232 2232 HOH HOH . H 6 HOH A 96 2234 2234 HOH HOH . H 6 HOH A 97 2236 2236 HOH HOH . H 6 HOH A 98 2238 2238 HOH HOH . H 6 HOH A 99 2240 2240 HOH HOH . H 6 HOH A 100 2245 2245 HOH HOH . H 6 HOH A 101 2252 2252 HOH HOH . H 6 HOH A 102 2253 2253 HOH HOH . H 6 HOH A 103 2257 2257 HOH HOH . H 6 HOH A 104 2260 2260 HOH HOH . H 6 HOH A 105 2261 2261 HOH HOH . H 6 HOH A 106 2265 2265 HOH HOH . H 6 HOH A 107 2274 2274 HOH HOH . H 6 HOH A 108 2281 2281 HOH HOH . H 6 HOH A 109 2291 2291 HOH HOH . H 6 HOH A 110 2294 2294 HOH HOH . H 6 HOH A 111 2296 2296 HOH HOH . H 6 HOH A 112 2302 2302 HOH HOH . H 6 HOH A 113 2305 2305 HOH HOH . H 6 HOH A 114 2310 2310 HOH HOH . H 6 HOH A 115 2311 2311 HOH HOH . H 6 HOH A 116 2327 2327 HOH HOH . H 6 HOH A 117 2333 2333 HOH HOH . H 6 HOH A 118 2334 2334 HOH HOH . H 6 HOH A 119 2341 2341 HOH HOH . H 6 HOH A 120 3000 3000 HOH HOH . H 6 HOH A 121 3032 3032 HOH HOH . H 6 HOH A 122 3038 3038 HOH HOH . H 6 HOH A 123 3301 3301 HOH HOH . H 6 HOH A 124 3400 3400 HOH HOH . H 6 HOH A 125 3507 3507 HOH HOH . H 6 HOH A 126 4001 4001 HOH HOH . H 6 HOH A 127 4006 4006 HOH HOH . H 6 HOH A 128 4101 4101 HOH HOH . H 6 HOH A 129 4102 4102 HOH HOH . H 6 HOH A 130 4104 4104 HOH HOH . H 6 HOH A 131 4105 4105 HOH HOH . H 6 HOH A 132 4201 4201 HOH HOH . H 6 HOH A 133 4203 4203 HOH HOH . H 6 HOH A 134 4204 4204 HOH HOH . H 6 HOH A 135 4205 4205 HOH HOH . H 6 HOH A 136 4207 4207 HOH HOH . H 6 HOH A 137 4214 4214 HOH HOH . H 6 HOH A 138 4216 4216 HOH HOH . H 6 HOH A 139 4223 4223 HOH HOH . H 6 HOH A 140 4224 4224 HOH HOH . H 6 HOH A 141 4225 4225 HOH HOH . H 6 HOH A 142 4226 4226 HOH HOH . H 6 HOH A 143 4228 4228 HOH HOH . H 6 HOH A 144 4230 4230 HOH HOH . H 6 HOH A 145 4231 4231 HOH HOH . H 6 HOH A 146 4234 4234 HOH HOH . H 6 HOH A 147 4236 4236 HOH HOH . H 6 HOH A 148 4237 4237 HOH HOH . H 6 HOH A 149 4238 4238 HOH HOH . H 6 HOH A 150 4239 4239 HOH HOH . H 6 HOH A 151 4242 4242 HOH HOH . H 6 HOH A 152 4243 4243 HOH HOH . H 6 HOH A 153 4244 4244 HOH HOH . H 6 HOH A 154 4245 4245 HOH HOH . H 6 HOH A 155 4247 4247 HOH HOH . H 6 HOH A 156 4248 4248 HOH HOH . H 6 HOH A 157 4258 4258 HOH HOH . H 6 HOH A 158 4259 4259 HOH HOH . H 6 HOH A 159 4261 4261 HOH HOH . H 6 HOH A 160 4266 4266 HOH HOH . H 6 HOH A 161 4267 4267 HOH HOH . H 6 HOH A 162 4268 4268 HOH HOH . H 6 HOH A 163 4270 4270 HOH HOH . H 6 HOH A 164 4271 4271 HOH HOH . H 6 HOH A 165 4272 4272 HOH HOH . H 6 HOH A 166 4276 4276 HOH HOH . H 6 HOH A 167 4277 4277 HOH HOH . H 6 HOH A 168 4278 4278 HOH HOH . H 6 HOH A 169 4288 4288 HOH HOH . H 6 HOH A 170 4289 4289 HOH HOH . H 6 HOH A 171 4290 4290 HOH HOH . H 6 HOH A 172 4294 4294 HOH HOH . H 6 HOH A 173 4295 4295 HOH HOH . H 6 HOH A 174 4296 4296 HOH HOH . H 6 HOH A 175 4297 4297 HOH HOH . H 6 HOH A 176 4302 4302 HOH HOH . H 6 HOH A 177 4303 4303 HOH HOH . H 6 HOH A 178 4304 4304 HOH HOH . H 6 HOH A 179 4308 4308 HOH HOH . H 6 HOH A 180 4309 4309 HOH HOH . H 6 HOH A 181 4310 4310 HOH HOH . H 6 HOH A 182 4313 4313 HOH HOH . H 6 HOH A 183 4317 4317 HOH HOH . H 6 HOH A 184 4318 4318 HOH HOH . H 6 HOH A 185 4319 4319 HOH HOH . H 6 HOH A 186 4326 4326 HOH HOH . H 6 HOH A 187 4327 4327 HOH HOH . H 6 HOH A 188 4328 4328 HOH HOH . H 6 HOH A 189 4329 4329 HOH HOH . H 6 HOH A 190 4330 4330 HOH HOH . H 6 HOH A 191 4336 4336 HOH HOH . H 6 HOH A 192 4339 4339 HOH HOH . H 6 HOH A 193 4340 4340 HOH HOH . H 6 HOH A 194 4400 4400 HOH HOH . H 6 HOH A 195 4402 4402 HOH HOH . H 6 HOH A 196 4403 4403 HOH HOH . H 6 HOH A 197 4404 4404 HOH HOH . H 6 HOH A 198 4405 4405 HOH HOH . H 6 HOH A 199 4407 4407 HOH HOH . H 6 HOH A 200 4409 4409 HOH HOH . H 6 HOH A 201 4420 4420 HOH HOH . H 6 HOH A 202 4421 4421 HOH HOH . H 6 HOH A 203 4422 4422 HOH HOH . H 6 HOH A 204 4426 4426 HOH HOH . H 6 HOH A 205 4427 4427 HOH HOH . H 6 HOH A 206 4431 4431 HOH HOH . H 6 HOH A 207 4434 4434 HOH HOH . H 6 HOH A 208 4435 4435 HOH HOH . H 6 HOH A 209 4438 4438 HOH HOH . H 6 HOH A 210 4442 4442 HOH HOH . H 6 HOH A 211 4448 4448 HOH HOH . H 6 HOH A 212 8000 8000 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 41.008 _atom_site.Cartn_y -9.826 _atom_site.Cartn_z 109.897 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1000 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #