data_3AR8 # _model_server_result.job_id 7_hM4r0aBmzzOdJZHnZETw _model_server_result.datetime_utc '2024-11-27 03:57:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ar8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 3AR8 # _exptl.entry_id 3AR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.71 _cell.angle_gamma 90 _cell.entry_id 3AR8 _cell.length_a 176.864 _cell.length_b 69.873 _cell.length_c 141.813 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C ACE 1 A ACE 1 1_555 A N MET 2 A MET 1 1_555 A ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OD1 ASP 352 A ASP 351 1_555 C MG MG . A MG 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc2 A O THR 354 A THR 353 1_555 C MG MG . A MG 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 A OD1 ASP 704 A ASP 703 1_555 C MG MG . A MG 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc4 A O LEU 712 A LEU 711 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc5 A O LYS 713 A LYS 712 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc6 A O ALA 715 A ALA 714 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc7 A OE2 GLU 733 A GLU 732 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc8 C MG MG . A MG 995 1_555 G O HOH . A HOH 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc9 C MG MG . A MG 995 1_555 G O HOH . A HOH 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AR8 _atom_sites.fract_transf_matrix[1][1] 0.005654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001697 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1000 1000 NA NA . C 3 MG A 1 995 995 MG MG . D 4 ALF A 1 998 998 ALF ALF . E 5 TM1 A 1 1002 1002 TM1 TM1 . F 6 TG1 A 1 1003 1003 TG1 TG1 . G 7 HOH A 1 4001 4001 HOH HOH . G 7 HOH A 2 4002 4002 HOH HOH . G 7 HOH A 3 4003 4003 HOH HOH . G 7 HOH A 4 4004 4004 HOH HOH . G 7 HOH A 5 4005 4005 HOH HOH . G 7 HOH A 6 4006 4006 HOH HOH . G 7 HOH A 7 4007 4007 HOH HOH . G 7 HOH A 8 4008 4008 HOH HOH . G 7 HOH A 9 4009 4009 HOH HOH . G 7 HOH A 10 4010 4010 HOH HOH . G 7 HOH A 11 4011 4011 HOH HOH . G 7 HOH A 12 4012 4012 HOH HOH . G 7 HOH A 13 4013 4013 HOH HOH . G 7 HOH A 14 4014 4014 HOH HOH . G 7 HOH A 15 4015 4015 HOH HOH . G 7 HOH A 16 4016 4016 HOH HOH . G 7 HOH A 17 4017 4017 HOH HOH . G 7 HOH A 18 4018 4018 HOH HOH . G 7 HOH A 19 4019 4019 HOH HOH . G 7 HOH A 20 4020 4020 HOH HOH . G 7 HOH A 21 4021 4021 HOH HOH . G 7 HOH A 22 4022 4022 HOH HOH . G 7 HOH A 23 4023 4023 HOH HOH . G 7 HOH A 24 4024 4024 HOH HOH . G 7 HOH A 25 4025 4025 HOH HOH . G 7 HOH A 26 4026 4026 HOH HOH . G 7 HOH A 27 4027 4027 HOH HOH . G 7 HOH A 28 4028 4028 HOH HOH . G 7 HOH A 29 4029 4029 HOH HOH . G 7 HOH A 30 4030 4030 HOH HOH . G 7 HOH A 31 4031 4031 HOH HOH . G 7 HOH A 32 4032 4032 HOH HOH . G 7 HOH A 33 4034 4034 HOH HOH . G 7 HOH A 34 4036 4036 HOH HOH . G 7 HOH A 35 4037 4037 HOH HOH . G 7 HOH A 36 4038 4038 HOH HOH . G 7 HOH A 37 4039 4039 HOH HOH . G 7 HOH A 38 4040 4040 HOH HOH . G 7 HOH A 39 4041 4041 HOH HOH . G 7 HOH A 40 4042 4042 HOH HOH . G 7 HOH A 41 4043 4043 HOH HOH . G 7 HOH A 42 4044 4044 HOH HOH . G 7 HOH A 43 4045 4045 HOH HOH . G 7 HOH A 44 4046 4046 HOH HOH . G 7 HOH A 45 4047 4047 HOH HOH . G 7 HOH A 46 4048 4048 HOH HOH . G 7 HOH A 47 4049 4049 HOH HOH . G 7 HOH A 48 4050 4050 HOH HOH . G 7 HOH A 49 4051 4051 HOH HOH . G 7 HOH A 50 4052 4052 HOH HOH . G 7 HOH A 51 4054 4054 HOH HOH . G 7 HOH A 52 4055 4055 HOH HOH . G 7 HOH A 53 4056 4056 HOH HOH . G 7 HOH A 54 4057 4057 HOH HOH . G 7 HOH A 55 4058 4058 HOH HOH . G 7 HOH A 56 4059 4059 HOH HOH . G 7 HOH A 57 4060 4060 HOH HOH . G 7 HOH A 58 4061 4061 HOH HOH . G 7 HOH A 59 4062 4062 HOH HOH . G 7 HOH A 60 4063 4063 HOH HOH . G 7 HOH A 61 4064 4064 HOH HOH . G 7 HOH A 62 4065 4065 HOH HOH . G 7 HOH A 63 4066 4066 HOH HOH . G 7 HOH A 64 4067 4067 HOH HOH . G 7 HOH A 65 4068 4068 HOH HOH . G 7 HOH A 66 4069 4069 HOH HOH . G 7 HOH A 67 4070 4070 HOH HOH . G 7 HOH A 68 4071 4071 HOH HOH . G 7 HOH A 69 4072 4072 HOH HOH . G 7 HOH A 70 4073 4073 HOH HOH . G 7 HOH A 71 4074 4074 HOH HOH . G 7 HOH A 72 4075 4075 HOH HOH . G 7 HOH A 73 4076 4076 HOH HOH . G 7 HOH A 74 4077 4077 HOH HOH . G 7 HOH A 75 4078 4078 HOH HOH . G 7 HOH A 76 4079 4079 HOH HOH . G 7 HOH A 77 4080 4080 HOH HOH . G 7 HOH A 78 4081 4081 HOH HOH . G 7 HOH A 79 4083 4083 HOH HOH . G 7 HOH A 80 4084 4084 HOH HOH . G 7 HOH A 81 4085 4085 HOH HOH . G 7 HOH A 82 4086 4086 HOH HOH . G 7 HOH A 83 4087 4087 HOH HOH . G 7 HOH A 84 4088 4088 HOH HOH . G 7 HOH A 85 4089 4089 HOH HOH . G 7 HOH A 86 4090 4090 HOH HOH . G 7 HOH A 87 4091 4091 HOH HOH . G 7 HOH A 88 4092 4092 HOH HOH . G 7 HOH A 89 4093 4093 HOH HOH . G 7 HOH A 90 4094 4094 HOH HOH . G 7 HOH A 91 4095 4095 HOH HOH . G 7 HOH A 92 4099 4099 HOH HOH . G 7 HOH A 93 4100 4100 HOH HOH . G 7 HOH A 94 4101 4101 HOH HOH . G 7 HOH A 95 4103 4103 HOH HOH . G 7 HOH A 96 4104 4104 HOH HOH . G 7 HOH A 97 4105 4105 HOH HOH . G 7 HOH A 98 4106 4106 HOH HOH . G 7 HOH A 99 4107 4107 HOH HOH . G 7 HOH A 100 4108 4108 HOH HOH . G 7 HOH A 101 4109 4109 HOH HOH . G 7 HOH A 102 4111 4111 HOH HOH . G 7 HOH A 103 4112 4112 HOH HOH . G 7 HOH A 104 4113 4113 HOH HOH . G 7 HOH A 105 9001 9001 HOH HOH . G 7 HOH A 106 9002 9002 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.75 _atom_site.Cartn_y 64.765 _atom_site.Cartn_z 101.871 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1000 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #