data_3ARB # _model_server_result.job_id ij4zbwvXGNgfoTjwmDILQA _model_server_result.datetime_utc '2024-11-05 05:47:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3arb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 3ARB # _exptl.entry_id 3ARB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ARB _cell.length_a 59.037 _cell.length_b 87.309 _cell.length_c 235.654 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ARB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 400 NAG 5 n E NAG 2 E 2 NAG A 401 NAG 5 n F NAG 1 F 1 NAG A 314 NAG 5 n F NAG 2 F 2 NAG A 315 NAG 5 n G NAG 1 G 1 NAG A 501 NAG 5 n G NAG 2 G 2 NAG A 502 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 22 C CYS 22 1_555 C SG CYS 89 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 C SG CYS 136 C CYS 139 1_555 C SG CYS 186 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 C SG CYS 161 C CYS 164 1_555 D SG CYS 171 D CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 D SG CYS 23 D CYS 23 1_555 D SG CYS 91 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 145 D CYS 148 1_555 D SG CYS 210 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 110 A ASN 110 1_555 I C1 NAG . A NAG 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 A ND2 ASN 165 A ASN 165 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 430 n n C1 C2 PEG sing 431 n n C1 H11 PEG sing 432 n n C1 H12 PEG sing 433 n n O1 HO1 PEG sing 434 n n C2 O2 PEG sing 435 n n C2 H21 PEG sing 436 n n C2 H22 PEG sing 437 n n O2 C3 PEG sing 438 n n C3 C4 PEG sing 439 n n C3 H31 PEG sing 440 n n C3 H32 PEG sing 441 n n C4 O4 PEG sing 442 n n C4 H41 PEG sing 443 n n C4 H42 PEG sing 444 n n O4 HO4 PEG sing 445 n n # _atom_sites.entry_id 3ARB _atom_sites.fract_transf_matrix[1][1] 0.016938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 PEG A 1 303 2 PEG PEG . I 7 NAG A 1 551 551 NAG NAG . J 8 FEE A 1 601 601 FEE FEE . K 9 D12 A 1 611 611 D12 D12 . L 6 PEG B 1 100 3 PEG PEG . M 10 HOH A 1 304 5 HOH HOH . M 10 HOH A 2 305 9 HOH HOH . M 10 HOH A 3 306 10 HOH HOH . M 10 HOH A 4 307 11 HOH HOH . M 10 HOH A 5 308 12 HOH HOH . M 10 HOH A 6 309 17 HOH HOH . M 10 HOH A 7 310 24 HOH HOH . M 10 HOH A 8 311 32 HOH HOH . M 10 HOH A 9 312 36 HOH HOH . M 10 HOH A 10 313 39 HOH HOH . M 10 HOH A 11 316 45 HOH HOH . M 10 HOH A 12 317 50 HOH HOH . M 10 HOH A 13 318 61 HOH HOH . M 10 HOH A 14 319 94 HOH HOH . M 10 HOH A 15 320 99 HOH HOH . M 10 HOH A 16 321 101 HOH HOH . M 10 HOH A 17 322 102 HOH HOH . M 10 HOH A 18 323 103 HOH HOH . M 10 HOH A 19 324 107 HOH HOH . M 10 HOH A 20 325 108 HOH HOH . N 10 HOH B 1 101 23 HOH HOH . N 10 HOH B 2 102 31 HOH HOH . N 10 HOH B 3 103 40 HOH HOH . N 10 HOH B 4 104 49 HOH HOH . N 10 HOH B 5 105 56 HOH HOH . N 10 HOH B 6 106 82 HOH HOH . N 10 HOH B 7 107 88 HOH HOH . N 10 HOH B 8 108 84 HOH HOH . N 10 HOH B 9 109 109 HOH HOH . N 10 HOH B 10 110 97 HOH HOH . O 10 HOH C 1 211 1 HOH HOH . O 10 HOH C 2 212 4 HOH HOH . O 10 HOH C 3 213 8 HOH HOH . O 10 HOH C 4 214 20 HOH HOH . O 10 HOH C 5 215 25 HOH HOH . O 10 HOH C 6 216 33 HOH HOH . O 10 HOH C 7 217 42 HOH HOH . O 10 HOH C 8 218 43 HOH HOH . O 10 HOH C 9 219 46 HOH HOH . O 10 HOH C 10 220 47 HOH HOH . O 10 HOH C 11 221 48 HOH HOH . O 10 HOH C 12 222 63 HOH HOH . O 10 HOH C 13 223 76 HOH HOH . O 10 HOH C 14 224 78 HOH HOH . O 10 HOH C 15 225 81 HOH HOH . O 10 HOH C 16 226 86 HOH HOH . O 10 HOH C 17 227 90 HOH HOH . O 10 HOH C 18 228 91 HOH HOH . O 10 HOH C 19 229 110 HOH HOH . O 10 HOH C 20 230 111 HOH HOH . O 10 HOH C 21 231 113 HOH HOH . O 10 HOH C 22 232 114 HOH HOH . O 10 HOH C 23 233 115 HOH HOH . O 10 HOH C 24 234 117 HOH HOH . P 10 HOH D 1 248 14 HOH HOH . P 10 HOH D 2 249 16 HOH HOH . P 10 HOH D 3 250 18 HOH HOH . P 10 HOH D 4 251 21 HOH HOH . P 10 HOH D 5 252 38 HOH HOH . P 10 HOH D 6 253 44 HOH HOH . P 10 HOH D 7 254 53 HOH HOH . P 10 HOH D 8 255 57 HOH HOH . P 10 HOH D 9 256 62 HOH HOH . P 10 HOH D 10 257 68 HOH HOH . P 10 HOH D 11 258 72 HOH HOH . P 10 HOH D 12 259 75 HOH HOH . P 10 HOH D 13 260 89 HOH HOH . P 10 HOH D 14 261 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . H 6 -23.365 -34.724 -97.713 1 69 ? C1 PEG 303 A 1 HETATM 2 O O1 PEG . . . H 6 -23.964 -33.433 -97.881 1 69.27 ? O1 PEG 303 A 1 HETATM 3 C C2 PEG . . . H 6 -24.451 -35.774 -97.495 1 68.69 ? C2 PEG 303 A 1 HETATM 4 O O2 PEG . . . H 6 -24.164 -36.544 -96.327 1 68.66 ? O2 PEG 303 A 1 HETATM 5 C C3 PEG . . . H 6 -25.253 -36.552 -95.402 1 68.6 ? C3 PEG 303 A 1 HETATM 6 C C4 PEG . . . H 6 -24.735 -36.719 -93.976 1 68.41 ? C4 PEG 303 A 1 HETATM 7 O O4 PEG . . . H 6 -24.454 -35.439 -93.394 1 68.28 ? O4 PEG 303 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 7 #