data_3AS3 # _model_server_result.job_id k_Pa07Bj_idOuVYnslJoEw _model_server_result.datetime_utc '2024-11-24 00:27:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3as3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":606}' # _entry.id 3AS3 # _exptl.entry_id 3AS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(5-isothiocyanato-1-benzofuran-2-yl)-4,5-dihydro-1H-imidazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AS3 _cell.length_a 66.87 _cell.length_b 83.57 _cell.length_c 102.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 116 1_555 A SG CYS 100 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf2 A SG CYS 175 A CYS 196 1_555 A SG CYS 196 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 388 A CYS 409 1_555 A SG CYS 397 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C12 H9 N3 O S' _chem_comp.formula_weight 243.284 _chem_comp.id I5I _chem_comp.mon_nstd_flag . _chem_comp.name 2-(5-isothiocyanato-1-benzofuran-2-yl)-4,5-dihydro-1H-imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-(imidazolin-2-yl)-5-isothiocyanatobenzofuran # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I5I sing 165 n y C1 C6 I5I doub 166 n y C1 N15 I5I sing 167 n n C2 C3 I5I doub 168 n y C3 C4 I5I sing 169 n y C3 C7 I5I sing 170 n y C4 C5 I5I doub 171 n y C4 O9 I5I sing 172 n y C5 C6 I5I sing 173 n y C7 C8 I5I doub 174 n y C8 O9 I5I sing 175 n y C8 C10 I5I sing 176 n n C10 N11 I5I sing 177 n n C10 N14 I5I doub 178 n n N11 C12 I5I sing 179 n n C12 C13 I5I sing 180 n n C13 N14 I5I sing 181 n n N15 C16 I5I doub 182 n n C16 S17 I5I doub 183 n n C2 H2 I5I sing 184 n n C5 H5 I5I sing 185 n n C6 H6 I5I sing 186 n n C7 H7 I5I sing 187 n n N11 HN11 I5I sing 188 n n C12 H12 I5I sing 189 n n C12 H12A I5I sing 190 n n C13 H13 I5I sing 191 n n C13 H13A I5I sing 192 n n # _atom_sites.entry_id 3AS3 _atom_sites.fract_transf_matrix[1][1] 0.014954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I5I A 1 606 600 I5I I5I . C 2 I5I A 1 607 601 I5I I5I . D 3 GOL A 1 3500 3500 GOL GOL . E 4 HOH A 1 1 1 HOH HOH . E 4 HOH A 2 2 2 HOH HOH . E 4 HOH A 3 3 3 HOH HOH . E 4 HOH A 4 4 4 HOH HOH . E 4 HOH A 5 6 6 HOH HOH . E 4 HOH A 6 7 7 HOH HOH . E 4 HOH A 7 8 8 HOH HOH . E 4 HOH A 8 9 9 HOH HOH . E 4 HOH A 9 10 10 HOH HOH . E 4 HOH A 10 11 11 HOH HOH . E 4 HOH A 11 12 12 HOH HOH . E 4 HOH A 12 13 13 HOH HOH . E 4 HOH A 13 14 14 HOH HOH . E 4 HOH A 14 15 15 HOH HOH . E 4 HOH A 15 16 16 HOH HOH . E 4 HOH A 16 17 17 HOH HOH . E 4 HOH A 17 18 18 HOH HOH . E 4 HOH A 18 19 19 HOH HOH . E 4 HOH A 19 20 20 HOH HOH . E 4 HOH A 20 21 21 HOH HOH . E 4 HOH A 21 608 22 HOH HOH . E 4 HOH A 22 609 23 HOH HOH . E 4 HOH A 23 610 24 HOH HOH . E 4 HOH A 24 611 25 HOH HOH . E 4 HOH A 25 612 26 HOH HOH . E 4 HOH A 26 613 27 HOH HOH . E 4 HOH A 27 614 28 HOH HOH . E 4 HOH A 28 615 29 HOH HOH . E 4 HOH A 29 616 30 HOH HOH . E 4 HOH A 30 617 31 HOH HOH . E 4 HOH A 31 618 32 HOH HOH . E 4 HOH A 32 619 33 HOH HOH . E 4 HOH A 33 620 34 HOH HOH . E 4 HOH A 34 621 35 HOH HOH . E 4 HOH A 35 622 36 HOH HOH . E 4 HOH A 36 623 37 HOH HOH . E 4 HOH A 37 624 38 HOH HOH . E 4 HOH A 38 625 39 HOH HOH . E 4 HOH A 39 626 40 HOH HOH . E 4 HOH A 40 627 41 HOH HOH . E 4 HOH A 41 628 42 HOH HOH . E 4 HOH A 42 629 43 HOH HOH . E 4 HOH A 43 630 44 HOH HOH . E 4 HOH A 44 631 45 HOH HOH . E 4 HOH A 45 632 46 HOH HOH . E 4 HOH A 46 633 47 HOH HOH . E 4 HOH A 47 634 48 HOH HOH . E 4 HOH A 48 635 49 HOH HOH . E 4 HOH A 49 636 50 HOH HOH . E 4 HOH A 50 637 51 HOH HOH . E 4 HOH A 51 638 52 HOH HOH . E 4 HOH A 52 639 53 HOH HOH . E 4 HOH A 53 640 54 HOH HOH . E 4 HOH A 54 641 55 HOH HOH . E 4 HOH A 55 642 56 HOH HOH . E 4 HOH A 56 643 57 HOH HOH . E 4 HOH A 57 644 58 HOH HOH . E 4 HOH A 58 645 59 HOH HOH . E 4 HOH A 59 646 60 HOH HOH . E 4 HOH A 60 647 61 HOH HOH . E 4 HOH A 61 648 62 HOH HOH . E 4 HOH A 62 649 63 HOH HOH . E 4 HOH A 63 650 64 HOH HOH . E 4 HOH A 64 651 65 HOH HOH . E 4 HOH A 65 652 66 HOH HOH . E 4 HOH A 66 653 67 HOH HOH . E 4 HOH A 67 654 68 HOH HOH . E 4 HOH A 68 655 69 HOH HOH . E 4 HOH A 69 656 70 HOH HOH . E 4 HOH A 70 657 71 HOH HOH . E 4 HOH A 71 658 72 HOH HOH . E 4 HOH A 72 659 73 HOH HOH . E 4 HOH A 73 660 74 HOH HOH . E 4 HOH A 74 661 75 HOH HOH . E 4 HOH A 75 662 76 HOH HOH . E 4 HOH A 76 663 77 HOH HOH . E 4 HOH A 77 664 78 HOH HOH . E 4 HOH A 78 665 79 HOH HOH . E 4 HOH A 79 666 80 HOH HOH . E 4 HOH A 80 667 81 HOH HOH . E 4 HOH A 81 668 82 HOH HOH . E 4 HOH A 82 669 83 HOH HOH . E 4 HOH A 83 670 84 HOH HOH . E 4 HOH A 84 671 85 HOH HOH . E 4 HOH A 85 672 86 HOH HOH . E 4 HOH A 86 673 87 HOH HOH . E 4 HOH A 87 674 88 HOH HOH . E 4 HOH A 88 675 89 HOH HOH . E 4 HOH A 89 676 90 HOH HOH . E 4 HOH A 90 677 91 HOH HOH . E 4 HOH A 91 678 92 HOH HOH . E 4 HOH A 92 679 93 HOH HOH . E 4 HOH A 93 680 94 HOH HOH . E 4 HOH A 94 681 96 HOH HOH . E 4 HOH A 95 682 97 HOH HOH . E 4 HOH A 96 683 98 HOH HOH . E 4 HOH A 97 684 99 HOH HOH . E 4 HOH A 98 685 100 HOH HOH . E 4 HOH A 99 686 101 HOH HOH . E 4 HOH A 100 687 102 HOH HOH . E 4 HOH A 101 688 103 HOH HOH . E 4 HOH A 102 689 104 HOH HOH . E 4 HOH A 103 690 105 HOH HOH . E 4 HOH A 104 691 106 HOH HOH . E 4 HOH A 105 692 107 HOH HOH . E 4 HOH A 106 693 108 HOH HOH . E 4 HOH A 107 694 109 HOH HOH . E 4 HOH A 108 695 110 HOH HOH . E 4 HOH A 109 696 111 HOH HOH . E 4 HOH A 110 697 112 HOH HOH . E 4 HOH A 111 698 113 HOH HOH . E 4 HOH A 112 699 114 HOH HOH . E 4 HOH A 113 700 115 HOH HOH . E 4 HOH A 114 701 116 HOH HOH . E 4 HOH A 115 702 117 HOH HOH . E 4 HOH A 116 703 118 HOH HOH . E 4 HOH A 117 704 119 HOH HOH . E 4 HOH A 118 705 120 HOH HOH . E 4 HOH A 119 706 121 HOH HOH . E 4 HOH A 120 707 122 HOH HOH . E 4 HOH A 121 708 123 HOH HOH . E 4 HOH A 122 709 124 HOH HOH . E 4 HOH A 123 710 125 HOH HOH . E 4 HOH A 124 711 126 HOH HOH . E 4 HOH A 125 712 127 HOH HOH . E 4 HOH A 126 713 128 HOH HOH . E 4 HOH A 127 714 129 HOH HOH . E 4 HOH A 128 715 130 HOH HOH . E 4 HOH A 129 716 131 HOH HOH . E 4 HOH A 130 717 132 HOH HOH . E 4 HOH A 131 718 133 HOH HOH . E 4 HOH A 132 719 134 HOH HOH . E 4 HOH A 133 720 135 HOH HOH . E 4 HOH A 134 721 136 HOH HOH . E 4 HOH A 135 722 137 HOH HOH . E 4 HOH A 136 723 138 HOH HOH . E 4 HOH A 137 724 139 HOH HOH . E 4 HOH A 138 725 140 HOH HOH . E 4 HOH A 139 726 141 HOH HOH . E 4 HOH A 140 727 142 HOH HOH . E 4 HOH A 141 728 143 HOH HOH . E 4 HOH A 142 729 144 HOH HOH . E 4 HOH A 143 730 145 HOH HOH . E 4 HOH A 144 731 146 HOH HOH . E 4 HOH A 145 732 147 HOH HOH . E 4 HOH A 146 733 148 HOH HOH . E 4 HOH A 147 734 149 HOH HOH . E 4 HOH A 148 735 150 HOH HOH . E 4 HOH A 149 736 151 HOH HOH . E 4 HOH A 150 737 152 HOH HOH . E 4 HOH A 151 738 153 HOH HOH . E 4 HOH A 152 739 154 HOH HOH . E 4 HOH A 153 740 155 HOH HOH . E 4 HOH A 154 741 156 HOH HOH . E 4 HOH A 155 742 157 HOH HOH . E 4 HOH A 156 743 158 HOH HOH . E 4 HOH A 157 744 159 HOH HOH . E 4 HOH A 158 745 160 HOH HOH . E 4 HOH A 159 746 161 HOH HOH . E 4 HOH A 160 747 162 HOH HOH . E 4 HOH A 161 748 163 HOH HOH . E 4 HOH A 162 749 164 HOH HOH . E 4 HOH A 163 750 165 HOH HOH . E 4 HOH A 164 751 166 HOH HOH . E 4 HOH A 165 752 167 HOH HOH . E 4 HOH A 166 753 168 HOH HOH . E 4 HOH A 167 754 169 HOH HOH . E 4 HOH A 168 755 170 HOH HOH . E 4 HOH A 169 756 171 HOH HOH . E 4 HOH A 170 757 172 HOH HOH . E 4 HOH A 171 758 173 HOH HOH . E 4 HOH A 172 759 174 HOH HOH . E 4 HOH A 173 760 175 HOH HOH . E 4 HOH A 174 761 176 HOH HOH . E 4 HOH A 175 762 177 HOH HOH . E 4 HOH A 176 763 178 HOH HOH . E 4 HOH A 177 764 179 HOH HOH . E 4 HOH A 178 765 180 HOH HOH . E 4 HOH A 179 766 181 HOH HOH . E 4 HOH A 180 767 182 HOH HOH . E 4 HOH A 181 768 183 HOH HOH . E 4 HOH A 182 769 184 HOH HOH . E 4 HOH A 183 770 185 HOH HOH . E 4 HOH A 184 771 186 HOH HOH . E 4 HOH A 185 772 187 HOH HOH . E 4 HOH A 186 773 188 HOH HOH . E 4 HOH A 187 774 189 HOH HOH . E 4 HOH A 188 775 190 HOH HOH . E 4 HOH A 189 776 191 HOH HOH . E 4 HOH A 190 777 192 HOH HOH . E 4 HOH A 191 778 193 HOH HOH . E 4 HOH A 192 779 194 HOH HOH . E 4 HOH A 193 780 195 HOH HOH . E 4 HOH A 194 781 196 HOH HOH . E 4 HOH A 195 782 197 HOH HOH . E 4 HOH A 196 783 198 HOH HOH . E 4 HOH A 197 784 199 HOH HOH . E 4 HOH A 198 785 200 HOH HOH . E 4 HOH A 199 786 201 HOH HOH . E 4 HOH A 200 787 202 HOH HOH . E 4 HOH A 201 788 203 HOH HOH . E 4 HOH A 202 789 204 HOH HOH . E 4 HOH A 203 790 205 HOH HOH . E 4 HOH A 204 791 206 HOH HOH . E 4 HOH A 205 792 207 HOH HOH . E 4 HOH A 206 793 208 HOH HOH . E 4 HOH A 207 794 209 HOH HOH . E 4 HOH A 208 795 210 HOH HOH . E 4 HOH A 209 796 211 HOH HOH . E 4 HOH A 210 797 212 HOH HOH . E 4 HOH A 211 798 213 HOH HOH . E 4 HOH A 212 799 214 HOH HOH . E 4 HOH A 213 800 215 HOH HOH . E 4 HOH A 214 801 216 HOH HOH . E 4 HOH A 215 802 217 HOH HOH . E 4 HOH A 216 803 218 HOH HOH . E 4 HOH A 217 804 219 HOH HOH . E 4 HOH A 218 805 220 HOH HOH . E 4 HOH A 219 806 221 HOH HOH . E 4 HOH A 220 807 222 HOH HOH . E 4 HOH A 221 808 223 HOH HOH . E 4 HOH A 222 809 224 HOH HOH . E 4 HOH A 223 810 225 HOH HOH . E 4 HOH A 224 811 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I5I . . . B 2 -0.18 5.135 20.227 1 78.12 ? C1 I5I 606 A 1 HETATM 2 C C2 I5I . . . B 2 -1.389 5.116 20.971 1 80.57 ? C2 I5I 606 A 1 HETATM 3 C C3 I5I . . . B 2 -2.446 6.017 20.685 1 71.86 ? C3 I5I 606 A 1 HETATM 4 C C4 I5I . . . B 2 -2.274 6.938 19.644 1 76.66 ? C4 I5I 606 A 1 HETATM 5 C C5 I5I . . . B 2 -1.074 6.966 18.905 1 77.52 ? C5 I5I 606 A 1 HETATM 6 C C6 I5I . . . B 2 -0.039 6.075 19.197 1 68.9 ? C6 I5I 606 A 1 HETATM 7 C C7 I5I . . . B 2 -3.68 6.223 21.206 1 67.43 ? C7 I5I 606 A 1 HETATM 8 C C8 I5I . . . B 2 -4.301 7.236 20.554 1 76.53 ? C8 I5I 606 A 1 HETATM 9 O O9 I5I . . . B 2 -3.436 7.683 19.577 1 68.17 ? O9 I5I 606 A 1 HETATM 10 C C10 I5I . . . B 2 -5.607 7.793 20.7 1 82.09 ? C10 I5I 606 A 1 HETATM 11 N N11 I5I . . . B 2 -6.244 8.502 19.733 1 81.77 ? N11 I5I 606 A 1 HETATM 12 C C12 I5I . . . B 2 -7.622 8.893 20.103 1 74.95 ? C12 I5I 606 A 1 HETATM 13 C C13 I5I . . . B 2 -7.765 8.278 21.491 1 87.42 ? C13 I5I 606 A 1 HETATM 14 N N14 I5I . . . B 2 -6.459 7.602 21.728 1 85.06 ? N14 I5I 606 A 1 HETATM 15 N N15 I5I . . . B 2 0.87 4.296 20.464 1 87.38 ? N15 I5I 606 A 1 HETATM 16 C C16 I5I . . . B 2 0.781 2.986 20.749 1 96.73 ? C16 I5I 606 A 1 HETATM 17 S S17 I5I . . . B 2 2.162 1.943 21 1 75.44 ? S17 I5I 606 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #