data_3ASE # _model_server_result.job_id ESNyidSL79x4CvYxlGve5Q _model_server_result.datetime_utc '2024-10-10 17:16:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ase # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 3ASE # _exptl.entry_id 3ASE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 319.209 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'oxo-centered triruthenium cluster' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ASE _cell.length_a 90.722 _cell.length_b 90.722 _cell.length_c 45.395 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ASE _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 13 A HIS 12 1_555 D RU2 RUO . A RUO 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A NE2 HIS 94 A HIS 93 1_555 F ZN ZNH . A ZNH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc3 D RU1 RUO . A RUO 154 1_555 G O HOH . A HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? # _chem_comp.formula 'O Ru3' _chem_comp.formula_weight 319.209 _chem_comp.id RUO _chem_comp.mon_nstd_flag . _chem_comp.name 'oxo-centered triruthenium cluster' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 RU1 RUO sing 264 n n O1 RU2 RUO sing 265 n n O1 RU3 RUO sing 266 n n # _atom_sites.entry_id 3ASE _atom_sites.fract_transf_matrix[1][1] 0.011023 _atom_sites.fract_transf_matrix[1][2] 0.006364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 200 200 SO4 SO4 . C 2 SO4 A 1 201 201 SO4 SO4 . D 3 RUO A 1 154 1 RUO RUO . E 3 RUO A 1 155 1 RUO RUO . F 4 ZNH A 1 156 1 ZNH ZNH . G 5 HOH A 1 157 1 HOH HOH . G 5 HOH A 2 158 2 HOH HOH . G 5 HOH A 3 159 3 HOH HOH . G 5 HOH A 4 160 4 HOH HOH . G 5 HOH A 5 161 5 HOH HOH . G 5 HOH A 6 162 6 HOH HOH . G 5 HOH A 7 163 7 HOH HOH . G 5 HOH A 8 164 8 HOH HOH . G 5 HOH A 9 165 9 HOH HOH . G 5 HOH A 10 166 10 HOH HOH . G 5 HOH A 11 167 11 HOH HOH . G 5 HOH A 12 168 12 HOH HOH . G 5 HOH A 13 169 13 HOH HOH . G 5 HOH A 14 170 14 HOH HOH . G 5 HOH A 15 171 15 HOH HOH . G 5 HOH A 16 172 16 HOH HOH . G 5 HOH A 17 173 17 HOH HOH . G 5 HOH A 18 174 18 HOH HOH . G 5 HOH A 19 175 19 HOH HOH . G 5 HOH A 20 176 20 HOH HOH . G 5 HOH A 21 177 21 HOH HOH . G 5 HOH A 22 178 22 HOH HOH . G 5 HOH A 23 179 23 HOH HOH . G 5 HOH A 24 180 24 HOH HOH . G 5 HOH A 25 181 25 HOH HOH . G 5 HOH A 26 182 26 HOH HOH . G 5 HOH A 27 183 27 HOH HOH . G 5 HOH A 28 184 28 HOH HOH . G 5 HOH A 29 185 29 HOH HOH . G 5 HOH A 30 186 30 HOH HOH . G 5 HOH A 31 187 31 HOH HOH . G 5 HOH A 32 188 32 HOH HOH . G 5 HOH A 33 189 33 HOH HOH . G 5 HOH A 34 190 34 HOH HOH . G 5 HOH A 35 191 35 HOH HOH . G 5 HOH A 36 192 36 HOH HOH . G 5 HOH A 37 193 37 HOH HOH . G 5 HOH A 38 194 38 HOH HOH . G 5 HOH A 39 195 39 HOH HOH . G 5 HOH A 40 196 40 HOH HOH . G 5 HOH A 41 197 41 HOH HOH . G 5 HOH A 42 198 42 HOH HOH . G 5 HOH A 43 199 43 HOH HOH . G 5 HOH A 44 202 44 HOH HOH . G 5 HOH A 45 203 45 HOH HOH . G 5 HOH A 46 204 46 HOH HOH . G 5 HOH A 47 205 47 HOH HOH . G 5 HOH A 48 206 48 HOH HOH . G 5 HOH A 49 207 49 HOH HOH . G 5 HOH A 50 208 50 HOH HOH . G 5 HOH A 51 209 51 HOH HOH . G 5 HOH A 52 210 52 HOH HOH . G 5 HOH A 53 211 53 HOH HOH . G 5 HOH A 54 212 54 HOH HOH . G 5 HOH A 55 213 55 HOH HOH . G 5 HOH A 56 214 56 HOH HOH . G 5 HOH A 57 215 57 HOH HOH . G 5 HOH A 58 216 58 HOH HOH . G 5 HOH A 59 217 59 HOH HOH . G 5 HOH A 60 218 60 HOH HOH . G 5 HOH A 61 219 61 HOH HOH . G 5 HOH A 62 220 62 HOH HOH . G 5 HOH A 63 221 63 HOH HOH . G 5 HOH A 64 222 64 HOH HOH . G 5 HOH A 65 223 65 HOH HOH . G 5 HOH A 66 224 66 HOH HOH . G 5 HOH A 67 225 67 HOH HOH . G 5 HOH A 68 226 68 HOH HOH . G 5 HOH A 69 227 69 HOH HOH . G 5 HOH A 70 228 70 HOH HOH . G 5 HOH A 71 229 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 RUO . . . D 3 -35.046 -28.792 -13.834 0.8 54.06 ? O1 RUO 154 A 1 HETATM 2 RU RU1 RUO . . . D 3 -34.712 -29.718 -12.212 0.8 53.36 ? RU1 RUO 154 A 1 HETATM 3 RU RU2 RUO . . . D 3 -36.166 -27.245 -13.825 0.8 52.32 ? RU2 RUO 154 A 1 HETATM 4 RU RU3 RUO . . . D 3 -34.247 -29.427 -15.458 0.8 54.09 ? RU3 RUO 154 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #