data_3ASE # _model_server_result.job_id qPkwDDO19CMit2dLRmGc1Q _model_server_result.datetime_utc '2024-11-25 11:48:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ase # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":156}' # _entry.id 3ASE # _exptl.entry_id 3ASE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 626.051 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING ZN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ASE _cell.length_a 90.722 _cell.length_b 90.722 _cell.length_c 45.395 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ASE _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 13 A HIS 12 1_555 D RU2 RUO . A RUO 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A NE2 HIS 94 A HIS 93 1_555 F ZN ZNH . A ZNH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc3 D RU1 RUO . A RUO 154 1_555 G O HOH . A HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? # _chem_comp.formula 'C34 H32 N4 O4 Zn' _chem_comp.formula_weight 626.051 _chem_comp.id ZNH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING ZN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag ZN NA ZNH sing 370 n n ZN NB ZNH sing 371 n n ZN NC ZNH sing 372 n n ZN ND ZNH sing 373 n n CHA C1A ZNH doub 374 n n CHA C4D ZNH sing 375 n n CHA HHA ZNH sing 376 n n CHB C4A ZNH doub 377 n n CHB C1B ZNH sing 378 n n CHB HHB ZNH sing 379 n n CHC C4B ZNH doub 380 n n CHC C1C ZNH sing 381 n n CHC HHC ZNH sing 382 n n CHD C4C ZNH sing 383 n n CHD C1D ZNH doub 384 n n CHD HHD ZNH sing 385 n n NA C1A ZNH sing 386 n n NA C4A ZNH sing 387 n n C1A C2A ZNH sing 388 n n C2A C3A ZNH doub 389 n n C2A CAA ZNH sing 390 n n C3A C4A ZNH sing 391 n n C3A CMA ZNH sing 392 n n CMA HMA1 ZNH sing 393 n n CMA HMA2 ZNH sing 394 n n CMA HMA3 ZNH sing 395 n n CAA CBA ZNH sing 396 n n CAA HAA1 ZNH sing 397 n n CAA HAA2 ZNH sing 398 n n CBA CGA ZNH sing 399 n n CBA HBA1 ZNH sing 400 n n CBA HBA2 ZNH sing 401 n n CGA O1A ZNH doub 402 n n CGA O2A ZNH sing 403 n n O2A H2A ZNH sing 404 n n NB C1B ZNH doub 405 n n NB C4B ZNH sing 406 n n C1B C2B ZNH sing 407 n n C2B C3B ZNH doub 408 n n C2B CMB ZNH sing 409 n n C3B C4B ZNH sing 410 n n C3B CAB ZNH sing 411 n n CMB HMB1 ZNH sing 412 n n CMB HMB2 ZNH sing 413 n n CMB HMB3 ZNH sing 414 n n CAB CBB ZNH doub 415 n n CAB HAB ZNH sing 416 n n CBB HBB1 ZNH sing 417 n n CBB HBB2 ZNH sing 418 n n NC C1C ZNH sing 419 n y NC C4C ZNH sing 420 n y C1C C2C ZNH doub 421 n y C2C C3C ZNH sing 422 n y C2C CMC ZNH sing 423 n n C3C C4C ZNH doub 424 n y C3C CAC ZNH sing 425 n n CMC HMC1 ZNH sing 426 n n CMC HMC2 ZNH sing 427 n n CMC HMC3 ZNH sing 428 n n CAC CBC ZNH doub 429 n n CAC HAC ZNH sing 430 n n CBC HBC1 ZNH sing 431 n n CBC HBC2 ZNH sing 432 n n ND C1D ZNH sing 433 n n ND C4D ZNH doub 434 n n C1D C2D ZNH sing 435 n n C2D C3D ZNH doub 436 n n C2D CMD ZNH sing 437 n n C3D C4D ZNH sing 438 n n C3D CAD ZNH sing 439 n n CMD HMD1 ZNH sing 440 n n CMD HMD2 ZNH sing 441 n n CMD HMD3 ZNH sing 442 n n CAD CBD ZNH sing 443 n n CAD HAD1 ZNH sing 444 n n CAD HAD2 ZNH sing 445 n n CBD CGD ZNH sing 446 n n CBD HBD1 ZNH sing 447 n n CBD HBD2 ZNH sing 448 n n CGD O1D ZNH doub 449 n n CGD O2D ZNH sing 450 n n O2D H2D ZNH sing 451 n n # _atom_sites.entry_id 3ASE _atom_sites.fract_transf_matrix[1][1] 0.011023 _atom_sites.fract_transf_matrix[1][2] 0.006364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 200 200 SO4 SO4 . C 2 SO4 A 1 201 201 SO4 SO4 . D 3 RUO A 1 154 1 RUO RUO . E 3 RUO A 1 155 1 RUO RUO . F 4 ZNH A 1 156 1 ZNH ZNH . G 5 HOH A 1 157 1 HOH HOH . G 5 HOH A 2 158 2 HOH HOH . G 5 HOH A 3 159 3 HOH HOH . G 5 HOH A 4 160 4 HOH HOH . G 5 HOH A 5 161 5 HOH HOH . G 5 HOH A 6 162 6 HOH HOH . G 5 HOH A 7 163 7 HOH HOH . G 5 HOH A 8 164 8 HOH HOH . G 5 HOH A 9 165 9 HOH HOH . G 5 HOH A 10 166 10 HOH HOH . G 5 HOH A 11 167 11 HOH HOH . G 5 HOH A 12 168 12 HOH HOH . G 5 HOH A 13 169 13 HOH HOH . G 5 HOH A 14 170 14 HOH HOH . G 5 HOH A 15 171 15 HOH HOH . G 5 HOH A 16 172 16 HOH HOH . G 5 HOH A 17 173 17 HOH HOH . G 5 HOH A 18 174 18 HOH HOH . G 5 HOH A 19 175 19 HOH HOH . G 5 HOH A 20 176 20 HOH HOH . G 5 HOH A 21 177 21 HOH HOH . G 5 HOH A 22 178 22 HOH HOH . G 5 HOH A 23 179 23 HOH HOH . G 5 HOH A 24 180 24 HOH HOH . G 5 HOH A 25 181 25 HOH HOH . G 5 HOH A 26 182 26 HOH HOH . G 5 HOH A 27 183 27 HOH HOH . G 5 HOH A 28 184 28 HOH HOH . G 5 HOH A 29 185 29 HOH HOH . G 5 HOH A 30 186 30 HOH HOH . G 5 HOH A 31 187 31 HOH HOH . G 5 HOH A 32 188 32 HOH HOH . G 5 HOH A 33 189 33 HOH HOH . G 5 HOH A 34 190 34 HOH HOH . G 5 HOH A 35 191 35 HOH HOH . G 5 HOH A 36 192 36 HOH HOH . G 5 HOH A 37 193 37 HOH HOH . G 5 HOH A 38 194 38 HOH HOH . G 5 HOH A 39 195 39 HOH HOH . G 5 HOH A 40 196 40 HOH HOH . G 5 HOH A 41 197 41 HOH HOH . G 5 HOH A 42 198 42 HOH HOH . G 5 HOH A 43 199 43 HOH HOH . G 5 HOH A 44 202 44 HOH HOH . G 5 HOH A 45 203 45 HOH HOH . G 5 HOH A 46 204 46 HOH HOH . G 5 HOH A 47 205 47 HOH HOH . G 5 HOH A 48 206 48 HOH HOH . G 5 HOH A 49 207 49 HOH HOH . G 5 HOH A 50 208 50 HOH HOH . G 5 HOH A 51 209 51 HOH HOH . G 5 HOH A 52 210 52 HOH HOH . G 5 HOH A 53 211 53 HOH HOH . G 5 HOH A 54 212 54 HOH HOH . G 5 HOH A 55 213 55 HOH HOH . G 5 HOH A 56 214 56 HOH HOH . G 5 HOH A 57 215 57 HOH HOH . G 5 HOH A 58 216 58 HOH HOH . G 5 HOH A 59 217 59 HOH HOH . G 5 HOH A 60 218 60 HOH HOH . G 5 HOH A 61 219 61 HOH HOH . G 5 HOH A 62 220 62 HOH HOH . G 5 HOH A 63 221 63 HOH HOH . G 5 HOH A 64 222 64 HOH HOH . G 5 HOH A 65 223 65 HOH HOH . G 5 HOH A 66 224 66 HOH HOH . G 5 HOH A 67 225 67 HOH HOH . G 5 HOH A 68 226 68 HOH HOH . G 5 HOH A 69 227 69 HOH HOH . G 5 HOH A 70 228 70 HOH HOH . G 5 HOH A 71 229 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 ZN ZN ZNH . . . F 4 -34.941 -4.029 2.448 1 13.96 ? ZN ZNH 156 A 1 HETATM 2 C CHA ZNH . . . F 4 -37.686 -2.319 3.663 1 12.74 ? CHA ZNH 156 A 1 HETATM 3 C CHB ZNH . . . F 4 -36.893 -5.269 -0.144 1 11.94 ? CHB ZNH 156 A 1 HETATM 4 C CHC ZNH . . . F 4 -32.4 -6.276 1.616 1 12.14 ? CHC ZNH 156 A 1 HETATM 5 C CHD ZNH . . . F 4 -33.209 -3.265 5.405 1 11.34 ? CHD ZNH 156 A 1 HETATM 6 N NA ZNH . . . F 4 -36.997 -3.901 1.897 1 12.83 ? NA ZNH 156 A 1 HETATM 7 C C1A ZNH . . . F 4 -37.905 -3.081 2.432 1 13.62 ? C1A ZNH 156 A 1 HETATM 8 C C2A ZNH . . . F 4 -39.107 -3.126 1.751 1 13.61 ? C2A ZNH 156 A 1 HETATM 9 C C3A ZNH . . . F 4 -38.886 -3.977 0.663 1 12.59 ? C3A ZNH 156 A 1 HETATM 10 C C4A ZNH . . . F 4 -37.563 -4.38 0.797 1 12.34 ? C4A ZNH 156 A 1 HETATM 11 C CMA ZNH . . . F 4 -39.836 -4.398 -0.427 1 13.19 ? CMA ZNH 156 A 1 HETATM 12 C CAA ZNH . . . F 4 -40.362 -2.351 2.118 1 13.04 ? CAA ZNH 156 A 1 HETATM 13 C CBA ZNH . . . F 4 -40.436 -1.131 1.163 1 14.39 ? CBA ZNH 156 A 1 HETATM 14 C CGA ZNH . . . F 4 -39.191 -0.216 1.144 1 16.35 ? CGA ZNH 156 A 1 HETATM 15 O O1A ZNH . . . F 4 -38.446 -0.137 0.124 1 17.19 ? O1A ZNH 156 A 1 HETATM 16 O O2A ZNH . . . F 4 -38.932 0.453 2.164 1 17.29 ? O2A ZNH 156 A 1 HETATM 17 N NB ZNH . . . F 4 -34.734 -5.591 0.996 1 11.61 ? NB ZNH 156 A 1 HETATM 18 C C1B ZNH . . . F 4 -35.578 -5.87 -0.015 1 12.17 ? C1B ZNH 156 A 1 HETATM 19 C C2B ZNH . . . F 4 -35.09 -6.861 -0.899 1 12.18 ? C2B ZNH 156 A 1 HETATM 20 C C3B ZNH . . . F 4 -33.844 -7.101 -0.376 1 11.47 ? C3B ZNH 156 A 1 HETATM 21 C C4B ZNH . . . F 4 -33.615 -6.282 0.802 1 10.85 ? C4B ZNH 156 A 1 HETATM 22 C CMB ZNH . . . F 4 -35.746 -7.486 -2.113 1 10.48 ? CMB ZNH 156 A 1 HETATM 23 C CAB ZNH . . . F 4 -32.984 -8 -0.859 1 13.11 ? CAB ZNH 156 A 1 HETATM 24 C CBB ZNH . . . F 4 -32.289 -8.9 -1.362 1 21.44 ? CBB ZNH 156 A 1 HETATM 25 N NC ZNH . . . F 4 -33.114 -4.728 3.393 1 12.42 ? NC ZNH 156 A 1 HETATM 26 C C1C ZNH . . . F 4 -32.216 -5.601 2.901 1 12.07 ? C1C ZNH 156 A 1 HETATM 27 C C2C ZNH . . . F 4 -31.112 -5.78 3.742 1 11.15 ? C2C ZNH 156 A 1 HETATM 28 C C3C ZNH . . . F 4 -31.386 -4.919 4.798 1 12.95 ? C3C ZNH 156 A 1 HETATM 29 C C4C ZNH . . . F 4 -32.588 -4.278 4.535 1 12.34 ? C4C ZNH 156 A 1 HETATM 30 C CMC ZNH . . . F 4 -29.925 -6.715 3.561 1 12.63 ? CMC ZNH 156 A 1 HETATM 31 C CAC ZNH . . . F 4 -30.594 -4.668 6.038 1 14.03 ? CAC ZNH 156 A 1 HETATM 32 C CBC ZNH . . . F 4 -29.387 -5.179 6.234 1 17.1 ? CBC ZNH 156 A 1 HETATM 33 N ND ZNH . . . F 4 -35.406 -3.005 4.298 1 13.83 ? ND ZNH 156 A 1 HETATM 34 C C1D ZNH . . . F 4 -34.572 -2.733 5.307 1 12.66 ? C1D ZNH 156 A 1 HETATM 35 C C2D ZNH . . . F 4 -35.202 -1.979 6.294 1 14.18 ? C2D ZNH 156 A 1 HETATM 36 C C3D ZNH . . . F 4 -36.472 -1.72 5.794 1 13.74 ? C3D ZNH 156 A 1 HETATM 37 C C4D ZNH . . . F 4 -36.523 -2.342 4.552 1 13.43 ? C4D ZNH 156 A 1 HETATM 38 C CMD ZNH . . . F 4 -34.629 -1.502 7.614 1 16.33 ? CMD ZNH 156 A 1 HETATM 39 C CAD ZNH . . . F 4 -37.591 -0.946 6.463 1 17.02 ? CAD ZNH 156 A 1 HETATM 40 C CBD ZNH . . . F 4 -38.172 -1.893 7.513 1 22.54 ? CBD ZNH 156 A 1 HETATM 41 C CGD ZNH . . . F 4 -39.423 -1.29 8.089 1 27.9 ? CGD ZNH 156 A 1 HETATM 42 O O1D ZNH . . . F 4 -40.413 -2.021 8.174 1 31.27 ? O1D ZNH 156 A 1 HETATM 43 O O2D ZNH . . . F 4 -39.43 -0.091 8.435 1 31 ? O2D ZNH 156 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 564 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #