data_3ASL # _model_server_result.job_id 6qEv_JfIhGDvuO6XqabDRQ _model_server_result.datetime_utc '2024-12-22 01:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3asl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":12}' # _entry.id 3ASL # _exptl.entry_id 3ASL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.69 _cell.angle_gamma 90 _cell.entry_id 3ASL _cell.length_a 67.21 _cell.length_b 36.137 _cell.length_c 34.175 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ASL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A SG CYS 5 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A SG CYS 8 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A SG CYS 16 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A SG CYS 19 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 D ZN ZN . A ZN 2 1_555 A SG CYS 21 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc6 D ZN ZN . A ZN 2 1_555 A SG CYS 24 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 D ZN ZN . A ZN 2 1_555 A ND1 HIS 44 A HIS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc8 D ZN ZN . A ZN 2 1_555 A SG CYS 47 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 E ZN ZN . A ZN 3 1_555 A SG CYS 36 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 E ZN ZN . A ZN 3 1_555 A SG CYS 39 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc11 E ZN ZN . A ZN 3 1_555 A SG CYS 63 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc12 E ZN ZN . A ZN 3 1_555 A SG CYS 66 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc13 F ZN ZN . A ZN 4 1_555 A NE2 HIS 22 A HIS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc14 F ZN ZN . A ZN 4 1_555 A OE1 GLU 65 A GLU 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3ASL _atom_sites.fract_transf_matrix[1][1] 0.014879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00562 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1 1 ZN ZN . D 3 ZN A 1 2 2 ZN ZN . E 3 ZN A 1 3 3 ZN ZN . F 3 ZN A 1 4 4 ZN ZN . G 4 EDO A 1 368 2 EDO EDO . H 4 EDO A 1 369 3 EDO EDO . I 4 EDO A 1 370 4 EDO EDO . J 4 EDO B 1 12 1 EDO EDO . K 5 HOH A 1 6 6 HOH HOH . K 5 HOH A 2 8 8 HOH HOH . K 5 HOH A 3 9 9 HOH HOH . K 5 HOH A 4 10 10 HOH HOH . K 5 HOH A 5 12 12 HOH HOH . K 5 HOH A 6 13 13 HOH HOH . K 5 HOH A 7 14 14 HOH HOH . K 5 HOH A 8 15 15 HOH HOH . K 5 HOH A 9 17 17 HOH HOH . K 5 HOH A 10 18 18 HOH HOH . K 5 HOH A 11 19 19 HOH HOH . K 5 HOH A 12 20 20 HOH HOH . K 5 HOH A 13 21 21 HOH HOH . K 5 HOH A 14 22 22 HOH HOH . K 5 HOH A 15 24 24 HOH HOH . K 5 HOH A 16 25 25 HOH HOH . K 5 HOH A 17 26 26 HOH HOH . K 5 HOH A 18 27 27 HOH HOH . K 5 HOH A 19 28 28 HOH HOH . K 5 HOH A 20 29 29 HOH HOH . K 5 HOH A 21 30 30 HOH HOH . K 5 HOH A 22 31 31 HOH HOH . K 5 HOH A 23 32 32 HOH HOH . K 5 HOH A 24 33 33 HOH HOH . K 5 HOH A 25 34 34 HOH HOH . K 5 HOH A 26 35 35 HOH HOH . K 5 HOH A 27 36 36 HOH HOH . K 5 HOH A 28 37 37 HOH HOH . K 5 HOH A 29 38 38 HOH HOH . K 5 HOH A 30 39 39 HOH HOH . K 5 HOH A 31 40 40 HOH HOH . K 5 HOH A 32 42 42 HOH HOH . K 5 HOH A 33 44 44 HOH HOH . K 5 HOH A 34 45 45 HOH HOH . K 5 HOH A 35 46 46 HOH HOH . K 5 HOH A 36 47 47 HOH HOH . K 5 HOH A 37 48 48 HOH HOH . K 5 HOH A 38 49 49 HOH HOH . K 5 HOH A 39 50 50 HOH HOH . K 5 HOH A 40 51 51 HOH HOH . K 5 HOH A 41 53 53 HOH HOH . K 5 HOH A 42 54 54 HOH HOH . K 5 HOH A 43 55 55 HOH HOH . K 5 HOH A 44 57 57 HOH HOH . K 5 HOH A 45 58 58 HOH HOH . K 5 HOH A 46 59 59 HOH HOH . K 5 HOH A 47 60 60 HOH HOH . K 5 HOH A 48 61 61 HOH HOH . K 5 HOH A 49 62 62 HOH HOH . K 5 HOH A 50 63 63 HOH HOH . K 5 HOH A 51 65 65 HOH HOH . K 5 HOH A 52 66 66 HOH HOH . K 5 HOH A 53 67 67 HOH HOH . K 5 HOH A 54 68 68 HOH HOH . K 5 HOH A 55 69 69 HOH HOH . K 5 HOH A 56 70 70 HOH HOH . K 5 HOH A 57 71 71 HOH HOH . K 5 HOH A 58 72 72 HOH HOH . K 5 HOH A 59 371 1 HOH HOH . K 5 HOH A 60 372 2 HOH HOH . K 5 HOH A 61 373 3 HOH HOH . K 5 HOH A 62 374 4 HOH HOH . L 5 HOH B 1 13 5 HOH HOH . L 5 HOH B 2 14 7 HOH HOH . L 5 HOH B 3 15 11 HOH HOH . L 5 HOH B 4 16 16 HOH HOH . L 5 HOH B 5 23 23 HOH HOH . L 5 HOH B 6 41 41 HOH HOH . L 5 HOH B 7 43 43 HOH HOH . L 5 HOH B 8 52 52 HOH HOH . L 5 HOH B 9 56 56 HOH HOH . L 5 HOH B 10 64 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 20.25 14.381 -0.965 1 37.5 ? C1 EDO 12 B 1 HETATM 2 O O1 EDO . . . J 4 20.669 14.04 0.345 1 38.86 ? O1 EDO 12 B 1 HETATM 3 C C2 EDO . . . J 4 19.505 13.166 -1.449 1 36.71 ? C2 EDO 12 B 1 HETATM 4 O O2 EDO . . . J 4 19.866 12.92 -2.805 1 36 ? O2 EDO 12 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #