data_3ATQ # _model_server_result.job_id jGgyhhTZ-mnMgQEcVvTCVw _model_server_result.datetime_utc '2024-11-05 21:00:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3atq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3ATQ # _exptl.entry_id 3ATQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ATQ _cell.length_a 62.913 _cell.length_b 80.935 _cell.length_c 105.813 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ATQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 311 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 310 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 336 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 335 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.096 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H35 N9 O15 P2' _chem_comp.formula_weight 787.566 _chem_comp.id FDA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FDA doub 126 n n PA O2A FDA sing 127 n n PA O5B FDA sing 128 n n PA O3P FDA sing 129 n n O2A HOA2 FDA sing 130 n n O5B C5B FDA sing 131 n n C5B C4B FDA sing 132 n n C5B H51A FDA sing 133 n n C5B H52A FDA sing 134 n n C4B O4B FDA sing 135 n n C4B C3B FDA sing 136 n n C4B H4B FDA sing 137 n n O4B C1B FDA sing 138 n n C3B O3B FDA sing 139 n n C3B C2B FDA sing 140 n n C3B H3B FDA sing 141 n n O3B HO3A FDA sing 142 n n C2B O2B FDA sing 143 n n C2B C1B FDA sing 144 n n C2B H2B FDA sing 145 n n O2B HO2A FDA sing 146 n n C1B N9A FDA sing 147 n n C1B H1B FDA sing 148 n n N9A C8A FDA sing 149 n y N9A C4A FDA sing 150 n y C8A N7A FDA doub 151 n y C8A H8A FDA sing 152 n n N7A C5A FDA sing 153 n y C5A C6A FDA sing 154 n y C5A C4A FDA doub 155 n y C6A N6A FDA sing 156 n n C6A N1A FDA doub 157 n y N6A H61A FDA sing 158 n n N6A H62A FDA sing 159 n n N1A C2A FDA sing 160 n y C2A N3A FDA doub 161 n y C2A H2A FDA sing 162 n n N3A C4A FDA sing 163 n y N1 C2 FDA sing 164 n n N1 C10 FDA sing 165 n n N1 HN1 FDA sing 166 n n C2 O2 FDA doub 167 n n C2 N3 FDA sing 168 n n N3 C4 FDA sing 169 n n N3 HN3 FDA sing 170 n n C4 O4 FDA doub 171 n n C4 C4X FDA sing 172 n n C4X N5 FDA sing 173 n n C4X C10 FDA doub 174 n n N5 C5X FDA sing 175 n n N5 HN5 FDA sing 176 n n C5X C6 FDA doub 177 n y C5X C9A FDA sing 178 n y C6 C7 FDA sing 179 n y C6 H6 FDA sing 180 n n C7 C7M FDA sing 181 n n C7 C8 FDA doub 182 n y C7M HM71 FDA sing 183 n n C7M HM72 FDA sing 184 n n C7M HM73 FDA sing 185 n n C8 C8M FDA sing 186 n n C8 C9 FDA sing 187 n y C8M HM81 FDA sing 188 n n C8M HM82 FDA sing 189 n n C8M HM83 FDA sing 190 n n C9 C9A FDA doub 191 n y C9 H9 FDA sing 192 n n C9A N10 FDA sing 193 n n N10 C10 FDA sing 194 n n N10 C1' FDA sing 195 n n C1' C2' FDA sing 196 n n C1' "H1'1" FDA sing 197 n n C1' "H1'2" FDA sing 198 n n C2' O2' FDA sing 199 n n C2' C3' FDA sing 200 n n C2' H2' FDA sing 201 n n O2' HO2' FDA sing 202 n n C3' O3' FDA sing 203 n n C3' C4' FDA sing 204 n n C3' H3' FDA sing 205 n n O3' HO3' FDA sing 206 n n C4' O4' FDA sing 207 n n C4' C5' FDA sing 208 n n C4' H4' FDA sing 209 n n O4' HO4' FDA sing 210 n n C5' O5' FDA sing 211 n n C5' "H5'1" FDA sing 212 n n C5' "H5'2" FDA sing 213 n n O5' P FDA sing 214 n n P O1P FDA doub 215 n n P O2P FDA sing 216 n n P O3P FDA sing 217 n n O2P HOP2 FDA sing 218 n n # _atom_sites.entry_id 3ATQ _atom_sites.fract_transf_matrix[1][1] 0.015895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDA A 1 501 501 FDA FDA . C 3 C14 A 1 502 502 C14 C14 . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 623 623 HOH HOH . D 4 HOH A 24 624 624 HOH HOH . D 4 HOH A 25 625 625 HOH HOH . D 4 HOH A 26 626 626 HOH HOH . D 4 HOH A 27 627 627 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 629 HOH HOH . D 4 HOH A 30 630 630 HOH HOH . D 4 HOH A 31 631 631 HOH HOH . D 4 HOH A 32 632 632 HOH HOH . D 4 HOH A 33 633 633 HOH HOH . D 4 HOH A 34 634 634 HOH HOH . D 4 HOH A 35 635 635 HOH HOH . D 4 HOH A 36 636 636 HOH HOH . D 4 HOH A 37 637 637 HOH HOH . D 4 HOH A 38 638 638 HOH HOH . D 4 HOH A 39 639 639 HOH HOH . D 4 HOH A 40 640 640 HOH HOH . D 4 HOH A 41 641 641 HOH HOH . D 4 HOH A 42 642 642 HOH HOH . D 4 HOH A 43 643 643 HOH HOH . D 4 HOH A 44 644 644 HOH HOH . D 4 HOH A 45 645 645 HOH HOH . D 4 HOH A 46 646 646 HOH HOH . D 4 HOH A 47 647 647 HOH HOH . D 4 HOH A 48 648 648 HOH HOH . D 4 HOH A 49 649 649 HOH HOH . D 4 HOH A 50 650 650 HOH HOH . D 4 HOH A 51 651 651 HOH HOH . D 4 HOH A 52 652 652 HOH HOH . D 4 HOH A 53 653 653 HOH HOH . D 4 HOH A 54 654 654 HOH HOH . D 4 HOH A 55 655 655 HOH HOH . D 4 HOH A 56 656 656 HOH HOH . D 4 HOH A 57 657 657 HOH HOH . D 4 HOH A 58 658 658 HOH HOH . D 4 HOH A 59 659 659 HOH HOH . D 4 HOH A 60 660 660 HOH HOH . D 4 HOH A 61 661 661 HOH HOH . D 4 HOH A 62 662 662 HOH HOH . D 4 HOH A 63 663 663 HOH HOH . D 4 HOH A 64 664 664 HOH HOH . D 4 HOH A 65 665 665 HOH HOH . D 4 HOH A 66 666 666 HOH HOH . D 4 HOH A 67 667 667 HOH HOH . D 4 HOH A 68 668 668 HOH HOH . D 4 HOH A 69 669 669 HOH HOH . D 4 HOH A 70 670 670 HOH HOH . D 4 HOH A 71 671 671 HOH HOH . D 4 HOH A 72 672 672 HOH HOH . D 4 HOH A 73 673 673 HOH HOH . D 4 HOH A 74 674 674 HOH HOH . D 4 HOH A 75 675 675 HOH HOH . D 4 HOH A 76 676 676 HOH HOH . D 4 HOH A 77 677 677 HOH HOH . D 4 HOH A 78 678 678 HOH HOH . D 4 HOH A 79 679 679 HOH HOH . D 4 HOH A 80 680 680 HOH HOH . D 4 HOH A 81 681 681 HOH HOH . D 4 HOH A 82 682 682 HOH HOH . D 4 HOH A 83 683 683 HOH HOH . D 4 HOH A 84 684 684 HOH HOH . D 4 HOH A 85 685 685 HOH HOH . D 4 HOH A 86 686 686 HOH HOH . D 4 HOH A 87 687 687 HOH HOH . D 4 HOH A 88 688 688 HOH HOH . D 4 HOH A 89 689 689 HOH HOH . D 4 HOH A 90 690 690 HOH HOH . D 4 HOH A 91 691 691 HOH HOH . D 4 HOH A 92 692 692 HOH HOH . D 4 HOH A 93 693 693 HOH HOH . D 4 HOH A 94 694 694 HOH HOH . D 4 HOH A 95 695 695 HOH HOH . D 4 HOH A 96 696 696 HOH HOH . D 4 HOH A 97 697 697 HOH HOH . D 4 HOH A 98 698 698 HOH HOH . D 4 HOH A 99 699 699 HOH HOH . D 4 HOH A 100 700 700 HOH HOH . D 4 HOH A 101 701 701 HOH HOH . D 4 HOH A 102 702 702 HOH HOH . D 4 HOH A 103 703 703 HOH HOH . D 4 HOH A 104 704 704 HOH HOH . D 4 HOH A 105 705 705 HOH HOH . D 4 HOH A 106 706 706 HOH HOH . D 4 HOH A 107 707 707 HOH HOH . D 4 HOH A 108 708 708 HOH HOH . D 4 HOH A 109 709 709 HOH HOH . D 4 HOH A 110 710 710 HOH HOH . D 4 HOH A 111 711 711 HOH HOH . D 4 HOH A 112 712 712 HOH HOH . D 4 HOH A 113 713 713 HOH HOH . D 4 HOH A 114 714 714 HOH HOH . D 4 HOH A 115 715 715 HOH HOH . D 4 HOH A 116 716 716 HOH HOH . D 4 HOH A 117 717 717 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDA . . . B 2 12.181 23.726 6.416 1 22.3 ? PA FDA 501 A 1 HETATM 2 O O1A FDA . . . B 2 10.726 23.344 6.591 1 23.62 ? O1A FDA 501 A 1 HETATM 3 O O2A FDA . . . B 2 12.774 24.81 7.259 1 22.86 ? O2A FDA 501 A 1 HETATM 4 O O5B FDA . . . B 2 12.31 24.166 4.879 1 21.68 ? O5B FDA 501 A 1 HETATM 5 C C5B FDA . . . B 2 11.619 23.507 3.811 1 22.4 ? C5B FDA 501 A 1 HETATM 6 C C4B FDA . . . B 2 11.382 24.532 2.703 1 22.87 ? C4B FDA 501 A 1 HETATM 7 O O4B FDA . . . B 2 10.888 23.862 1.544 1 23.69 ? O4B FDA 501 A 1 HETATM 8 C C3B FDA . . . B 2 10.337 25.579 3.078 1 24.22 ? C3B FDA 501 A 1 HETATM 9 O O3B FDA . . . B 2 10.942 26.89 3.011 1 24.12 ? O3B FDA 501 A 1 HETATM 10 C C2B FDA . . . B 2 9.202 25.396 2.064 1 23.59 ? C2B FDA 501 A 1 HETATM 11 O O2B FDA . . . B 2 8.677 26.654 1.607 1 24.57 ? O2B FDA 501 A 1 HETATM 12 C C1B FDA . . . B 2 9.899 24.696 0.913 1 25.67 ? C1B FDA 501 A 1 HETATM 13 N N9A FDA . . . B 2 9.088 23.753 0.121 1 23.95 ? N9A FDA 501 A 1 HETATM 14 C C8A FDA . . . B 2 8.392 22.694 0.581 1 23.78 ? C8A FDA 501 A 1 HETATM 15 N N7A FDA . . . B 2 7.864 22.035 -0.495 1 25.93 ? N7A FDA 501 A 1 HETATM 16 C C5A FDA . . . B 2 8.263 22.69 -1.611 1 25.43 ? C5A FDA 501 A 1 HETATM 17 C C6A FDA . . . B 2 8.04 22.494 -2.975 1 27.58 ? C6A FDA 501 A 1 HETATM 18 N N6A FDA . . . B 2 7.261 21.467 -3.398 1 27.7 ? N6A FDA 501 A 1 HETATM 19 N N1A FDA . . . B 2 8.614 23.356 -3.86 1 28.42 ? N1A FDA 501 A 1 HETATM 20 C C2A FDA . . . B 2 9.374 24.398 -3.456 1 26.67 ? C2A FDA 501 A 1 HETATM 21 N N3A FDA . . . B 2 9.577 24.607 -2.146 1 25.1 ? N3A FDA 501 A 1 HETATM 22 C C4A FDA . . . B 2 9.045 23.764 -1.218 1 24.72 ? C4A FDA 501 A 1 HETATM 23 N N1 FDA . . . B 2 15.304 22.604 15.619 1 20.95 ? N1 FDA 501 A 1 HETATM 24 C C2 FDA . . . B 2 16.334 23.242 16.208 1 22.45 ? C2 FDA 501 A 1 HETATM 25 O O2 FDA . . . B 2 17.487 23.014 15.767 1 21.68 ? O2 FDA 501 A 1 HETATM 26 N N3 FDA . . . B 2 16.16 24.089 17.254 1 23.35 ? N3 FDA 501 A 1 HETATM 27 C C4 FDA . . . B 2 14.957 24.371 17.794 1 25.6 ? C4 FDA 501 A 1 HETATM 28 O O4 FDA . . . B 2 14.808 25.172 18.763 1 25.37 ? O4 FDA 501 A 1 HETATM 29 C C4X FDA . . . B 2 13.776 23.713 17.202 1 23.51 ? C4X FDA 501 A 1 HETATM 30 N N5 FDA . . . B 2 12.515 23.869 17.657 1 24.26 ? N5 FDA 501 A 1 HETATM 31 C C5X FDA . . . B 2 11.449 23.497 16.91 1 23.5 ? C5X FDA 501 A 1 HETATM 32 C C6 FDA . . . B 2 10.172 23.955 17.244 1 25.51 ? C6 FDA 501 A 1 HETATM 33 C C7 FDA . . . B 2 9.061 23.64 16.46 1 24.03 ? C7 FDA 501 A 1 HETATM 34 C C7M FDA . . . B 2 7.698 24.194 16.866 1 24.94 ? C7M FDA 501 A 1 HETATM 35 C C8 FDA . . . B 2 9.234 22.833 15.33 1 22.87 ? C8 FDA 501 A 1 HETATM 36 C C8M FDA . . . B 2 8.058 22.485 14.423 1 22.61 ? C8M FDA 501 A 1 HETATM 37 C C9 FDA . . . B 2 10.529 22.375 14.984 1 22.2 ? C9 FDA 501 A 1 HETATM 38 C C9A FDA . . . B 2 11.636 22.69 15.773 1 21.88 ? C9A FDA 501 A 1 HETATM 39 N N10 FDA . . . B 2 12.94 22.216 15.437 1 22.88 ? N10 FDA 501 A 1 HETATM 40 C C10 FDA . . . B 2 14.041 22.814 16.053 1 23.23 ? C10 FDA 501 A 1 HETATM 41 C C1' FDA . . . B 2 13.125 21.559 14.123 1 21.28 ? C1' FDA 501 A 1 HETATM 42 C C2' FDA . . . B 2 13.651 22.516 13.037 1 20.65 ? C2' FDA 501 A 1 HETATM 43 O O2' FDA . . . B 2 12.808 23.67 12.978 1 21.73 ? O2' FDA 501 A 1 HETATM 44 C C3' FDA . . . B 2 13.607 21.786 11.699 1 19.12 ? C3' FDA 501 A 1 HETATM 45 O O3' FDA . . . B 2 14.126 20.454 11.921 1 19.93 ? O3' FDA 501 A 1 HETATM 46 C C4' FDA . . . B 2 14.446 22.445 10.598 1 20 ? C4' FDA 501 A 1 HETATM 47 O O4' FDA . . . B 2 14.115 23.825 10.452 1 21.48 ? O4' FDA 501 A 1 HETATM 48 C C5' FDA . . . B 2 14.188 21.702 9.272 1 21.3 ? C5' FDA 501 A 1 HETATM 49 O O5' FDA . . . B 2 14.871 22.368 8.201 1 21.51 ? O5' FDA 501 A 1 HETATM 50 P P FDA . . . B 2 14.555 21.992 6.669 1 19.14 ? P FDA 501 A 1 HETATM 51 O O1P FDA . . . B 2 15.361 22.848 5.742 1 20.71 ? O1P FDA 501 A 1 HETATM 52 O O2P FDA . . . B 2 14.618 20.478 6.576 1 17.39 ? O2P FDA 501 A 1 HETATM 53 O O3P FDA . . . B 2 12.964 22.321 6.496 1 19.04 ? O3P FDA 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #