data_3AU1 # _model_server_result.job_id aDcoI80Z_ogKZLIqwMPHAA _model_server_result.datetime_utc '2024-11-02 01:17:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3au1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 3AU1 # _exptl.entry_id 3AU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.68 _cell.angle_gamma 90 _cell.entry_id 3AU1 _cell.length_a 41.656 _cell.length_b 98.447 _cell.length_c 55.486 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 GLC NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN GLC C1 O1 . O3 HO3 . sing 4 ? 3 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 2 GLC NAG C1 O1 . O4 HO4 . sing 7 ? 4 4 3 MAN GLC C1 O1 . O3 HO3 . sing 8 ? 4 5 3 BMA GLC C1 O1 . O6 HO6 . sing 9 ? 4 6 1 FUC NAG C1 O1 . O6 HO6 . sing 10 ? 5 2 1 GAL BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 289 NAG 3 n C NAG 2 C 2 NAG A 290 NAG 3 n C GLC 3 C 3 GLC A 306 GLC 3 n C MAN 4 C 4 MAN A 292 MAN 3 n C MAN 5 C 5 MAN A 293 MAN 4 n D NAG 1 D 1 NAG A 294 NAG 4 n D NAG 2 D 2 NAG A 295 NAG 4 n D GLC 3 D 3 GLC A 311 GLC 4 n D MAN 4 D 4 MAN A 313 MAN 4 n D BMA 5 D 5 BMA A 297 MAN 4 n D FUC 6 D 6 FUC A 299 FUC 5 n E BGC 1 E 1 BGC C 1 GD3 5 n E GAL 2 E 2 GAL C 1 GD3 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 F C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 G OA ERA . A ERA 315 1_555 E C1 BGC . E BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.233 ? covale ? covale7 C O3 GLC . C GLC 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 C O2 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale10 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale11 D O4 NAG . D NAG 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale12 D O3 GLC . D GLC 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.539 ? covale ? covale13 D O6 GLC . D GLC 3 1_555 D C1 BMA . D BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 ? covale ? covale14 E O4 BGC . E BGC 1 1_555 E C1 GAL . E GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 499 n n C1 O1 NAG sing 500 n n C1 O5 NAG sing 501 n n C1 H1 NAG sing 502 n n C2 C3 NAG sing 503 n n C2 N2 NAG sing 504 n n C2 H2 NAG sing 505 n n C3 C4 NAG sing 506 n n C3 O3 NAG sing 507 n n C3 H3 NAG sing 508 n n C4 C5 NAG sing 509 n n C4 O4 NAG sing 510 n n C4 H4 NAG sing 511 n n C5 C6 NAG sing 512 n n C5 O5 NAG sing 513 n n C5 H5 NAG sing 514 n n C6 O6 NAG sing 515 n n C6 H61 NAG sing 516 n n C6 H62 NAG sing 517 n n C7 C8 NAG sing 518 n n C7 N2 NAG sing 519 n n C7 O7 NAG doub 520 n n C8 H81 NAG sing 521 n n C8 H82 NAG sing 522 n n C8 H83 NAG sing 523 n n N2 HN2 NAG sing 524 n n O1 HO1 NAG sing 525 n n O3 HO3 NAG sing 526 n n O4 HO4 NAG sing 527 n n O6 HO6 NAG sing 528 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3AU1 _atom_sites.fract_transf_matrix[1][1] 0.024006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007193 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 303 288 NAG NAG . G 7 ERA A 1 315 1 ERA GD3 . H 8 HOH A 1 318 1 HOH HOH . H 8 HOH A 2 319 2 HOH HOH . H 8 HOH A 3 320 5 HOH HOH . H 8 HOH A 4 321 7 HOH HOH . H 8 HOH A 5 322 8 HOH HOH . H 8 HOH A 6 323 10 HOH HOH . H 8 HOH A 7 324 11 HOH HOH . H 8 HOH A 8 325 13 HOH HOH . H 8 HOH A 9 326 14 HOH HOH . H 8 HOH A 10 327 18 HOH HOH . H 8 HOH A 11 328 19 HOH HOH . H 8 HOH A 12 329 22 HOH HOH . H 8 HOH A 13 330 23 HOH HOH . H 8 HOH A 14 331 24 HOH HOH . H 8 HOH A 15 332 26 HOH HOH . H 8 HOH A 16 333 27 HOH HOH . H 8 HOH A 17 334 30 HOH HOH . H 8 HOH A 18 335 31 HOH HOH . H 8 HOH A 19 336 32 HOH HOH . H 8 HOH A 20 337 33 HOH HOH . H 8 HOH A 21 338 35 HOH HOH . H 8 HOH A 22 339 36 HOH HOH . H 8 HOH A 23 340 38 HOH HOH . H 8 HOH A 24 341 39 HOH HOH . H 8 HOH A 25 342 43 HOH HOH . H 8 HOH A 26 343 44 HOH HOH . H 8 HOH A 27 344 47 HOH HOH . H 8 HOH A 28 345 48 HOH HOH . H 8 HOH A 29 346 51 HOH HOH . H 8 HOH A 30 347 52 HOH HOH . H 8 HOH A 31 348 54 HOH HOH . H 8 HOH A 32 349 55 HOH HOH . H 8 HOH A 33 350 57 HOH HOH . H 8 HOH A 34 351 58 HOH HOH . H 8 HOH A 35 352 61 HOH HOH . H 8 HOH A 36 353 62 HOH HOH . H 8 HOH A 37 354 63 HOH HOH . H 8 HOH A 38 355 64 HOH HOH . H 8 HOH A 39 356 65 HOH HOH . H 8 HOH A 40 357 67 HOH HOH . H 8 HOH A 41 358 68 HOH HOH . H 8 HOH A 42 359 69 HOH HOH . H 8 HOH A 43 360 70 HOH HOH . H 8 HOH A 44 361 71 HOH HOH . H 8 HOH A 45 362 72 HOH HOH . H 8 HOH A 46 363 73 HOH HOH . H 8 HOH A 47 364 74 HOH HOH . H 8 HOH A 48 365 76 HOH HOH . H 8 HOH A 49 366 77 HOH HOH . I 8 HOH B 1 100 3 HOH HOH . I 8 HOH B 2 101 4 HOH HOH . I 8 HOH B 3 102 6 HOH HOH . I 8 HOH B 4 103 9 HOH HOH . I 8 HOH B 5 104 12 HOH HOH . I 8 HOH B 6 105 15 HOH HOH . I 8 HOH B 7 106 16 HOH HOH . I 8 HOH B 8 107 17 HOH HOH . I 8 HOH B 9 108 20 HOH HOH . I 8 HOH B 10 109 21 HOH HOH . I 8 HOH B 11 110 25 HOH HOH . I 8 HOH B 12 111 28 HOH HOH . I 8 HOH B 13 112 29 HOH HOH . I 8 HOH B 14 113 34 HOH HOH . I 8 HOH B 15 114 37 HOH HOH . I 8 HOH B 16 115 40 HOH HOH . I 8 HOH B 17 116 41 HOH HOH . I 8 HOH B 18 117 42 HOH HOH . I 8 HOH B 19 118 45 HOH HOH . I 8 HOH B 20 119 46 HOH HOH . I 8 HOH B 21 120 49 HOH HOH . I 8 HOH B 22 121 50 HOH HOH . I 8 HOH B 23 122 53 HOH HOH . I 8 HOH B 24 123 56 HOH HOH . I 8 HOH B 25 124 59 HOH HOH . I 8 HOH B 26 125 60 HOH HOH . I 8 HOH B 27 126 66 HOH HOH . I 8 HOH B 28 127 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 6 11.716 9.114 23.42 1 27.01 ? C1 NAG 303 A 1 HETATM 2 C C2 NAG . . . F 6 11.475 10.47 22.727 1 28.52 ? C2 NAG 303 A 1 HETATM 3 C C3 NAG . . . F 6 10.124 10.635 22.008 1 28.24 ? C3 NAG 303 A 1 HETATM 4 C C4 NAG . . . F 6 9.482 9.344 21.503 1 27.66 ? C4 NAG 303 A 1 HETATM 5 C C5 NAG . . . F 6 9.741 8.245 22.524 1 27.87 ? C5 NAG 303 A 1 HETATM 6 C C6 NAG . . . F 6 9.133 6.892 22.15 1 28.09 ? C6 NAG 303 A 1 HETATM 7 C C7 NAG . . . F 6 12.649 12.321 23.84 1 30.38 ? C7 NAG 303 A 1 HETATM 8 C C8 NAG . . . F 6 12.579 13.386 24.901 1 30.47 ? C8 NAG 303 A 1 HETATM 9 N N2 NAG . . . F 6 11.571 11.551 23.699 1 29.6 ? N2 NAG 303 A 1 HETATM 10 O O3 NAG . . . F 6 10.28 11.542 20.932 1 28.1 ? O3 NAG 303 A 1 HETATM 11 O O4 NAG . . . F 6 8.094 9.551 21.302 1 27.78 ? O4 NAG 303 A 1 HETATM 12 O O5 NAG . . . F 6 11.135 8.098 22.632 1 27.24 ? O5 NAG 303 A 1 HETATM 13 O O6 NAG . . . F 6 9.9 6.312 21.122 1 28.28 ? O6 NAG 303 A 1 HETATM 14 O O7 NAG . . . F 6 13.661 12.182 23.151 1 30.89 ? O7 NAG 303 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #