data_3AU6 # _model_server_result.job_id dA3flcVRbWvjnpGISDFsKg _model_server_result.datetime_utc '2024-11-13 04:40:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3au6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":576}' # _entry.id 3AU6 # _exptl.entry_id 3AU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AU6 _cell.length_a 80.166 _cell.length_b 80.166 _cell.length_c 268.555 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DT 6 P DT 6 1_555 B P DDG 7 P DDG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? metalc ? metalc1 A OG SER 188 A SER 188 1_555 E MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc2 A OD2 ASP 198 A ASP 198 1_555 F MG MG . A MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 A OD1 ASP 200 A ASP 200 1_555 F MG MG . A MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc4 A OE2 GLU 413 A GLU 413 1_555 G ZN ZN . A ZN 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc5 A NE2 HIS 468 A HIS 468 1_555 G ZN ZN . A ZN 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 D O3A DG3 . A DG3 576 1_555 E MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc7 D O1A DG3 . A DG3 576 1_555 E MG MG . A MG 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc8 D O1A DG3 . A DG3 576 1_555 F MG MG . A MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc9 D O5' DG3 . A DG3 576 1_555 F MG MG . A MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 P DC 1 1_555 C N1 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 P DC 1 1_555 C O6 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 P DC 1 1_555 C N2 DG 11 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 P DA 2 1_555 C N3 DT 10 T DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 P DA 2 1_555 C O4 DT 10 T DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 3 P DG 3 1_555 C N3 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 3 P DG 3 1_555 C O2 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 3 P DG 3 1_555 C N4 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DT 4 P DT 4 1_555 C N1 DA 8 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 DT 4 P DT 4 1_555 C N6 DA 8 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DA 5 P DA 5 1_555 C N3 DT 7 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N6 DA 5 P DA 5 1_555 C O4 DT 7 T DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DT 6 P DT 6 1_555 C N1 DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O4 DT 6 P DT 6 1_555 C N6 DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DDG 7 P DDG 7 1_555 C N3 DC 5 T DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DDG 7 P DDG 7 1_555 C O2 DC 5 T DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DDG 7 P DDG 7 1_555 C N4 DC 5 T DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DG3 _chem_comp.mon_nstd_flag . _chem_comp.name "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DG3 doub 233 n n PG O2G DG3 sing 234 n n PG O3G DG3 sing 235 n n PG O3B DG3 sing 236 n n O2G HOG2 DG3 sing 237 n n O3G HOG3 DG3 sing 238 n n O3B PB DG3 sing 239 n n PB O1B DG3 doub 240 n n PB O2B DG3 sing 241 n n PB O3A DG3 sing 242 n n O2B HOB2 DG3 sing 243 n n O3A PA DG3 sing 244 n n PA O1A DG3 doub 245 n n PA O2A DG3 sing 246 n n PA O5' DG3 sing 247 n n O2A HOA2 DG3 sing 248 n n O5' C5' DG3 sing 249 n n C5' C4' DG3 sing 250 n n C5' "H5'1" DG3 sing 251 n n C5' "H5'2" DG3 sing 252 n n C4' O4' DG3 sing 253 n n C4' C3' DG3 sing 254 n n C4' H4' DG3 sing 255 n n O4' C1' DG3 sing 256 n n C3' C2' DG3 sing 257 n n C3' "H3'1" DG3 sing 258 n n C3' "H3'2" DG3 sing 259 n n C2' C1' DG3 sing 260 n n C2' "H2'1" DG3 sing 261 n n C2' "H2'2" DG3 sing 262 n n C1' N9 DG3 sing 263 n n C1' H1' DG3 sing 264 n n N9 C8 DG3 sing 265 n y N9 C4 DG3 sing 266 n y C8 N7 DG3 doub 267 n y C8 H8 DG3 sing 268 n n N7 C5 DG3 sing 269 n y C5 C6 DG3 sing 270 n n C5 C4 DG3 doub 271 n y C6 O6 DG3 doub 272 n n C6 N1 DG3 sing 273 n n N1 C2 DG3 sing 274 n n N1 HN1 DG3 sing 275 n n C2 N2 DG3 sing 276 n n C2 N3 DG3 doub 277 n n N2 HN21 DG3 sing 278 n n N2 HN22 DG3 sing 279 n n N3 C4 DG3 sing 280 n n # _atom_sites.entry_id 3AU6 _atom_sites.fract_transf_matrix[1][1] 0.012474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DG3 A 1 576 1 DG3 DG3 . E 5 MG A 1 577 1 MG MG . F 5 MG A 1 578 2 MG MG . G 6 ZN A 1 579 3 ZN ZN . H 7 CL A 1 580 4 CL CL . I 7 CL A 1 581 5 CL CL . J 7 CL A 1 582 6 CL CL . K 7 CL A 1 583 7 CL CL . L 8 SO4 A 1 584 1 SO4 SO4 . M 9 HOH A 1 585 19 HOH HOH . M 9 HOH A 2 586 25 HOH HOH . M 9 HOH A 3 587 27 HOH HOH . M 9 HOH A 4 588 30 HOH HOH . M 9 HOH A 5 589 34 HOH HOH . M 9 HOH A 6 590 37 HOH HOH . M 9 HOH A 7 591 40 HOH HOH . M 9 HOH A 8 592 41 HOH HOH . M 9 HOH A 9 593 42 HOH HOH . M 9 HOH A 10 594 43 HOH HOH . M 9 HOH A 11 595 46 HOH HOH . M 9 HOH A 12 596 47 HOH HOH . M 9 HOH A 13 597 49 HOH HOH . M 9 HOH A 14 598 51 HOH HOH . M 9 HOH A 15 599 53 HOH HOH . M 9 HOH A 16 600 58 HOH HOH . M 9 HOH A 17 601 59 HOH HOH . M 9 HOH A 18 602 61 HOH HOH . M 9 HOH A 19 603 65 HOH HOH . M 9 HOH A 20 604 66 HOH HOH . M 9 HOH A 21 605 67 HOH HOH . M 9 HOH A 22 606 68 HOH HOH . M 9 HOH A 23 607 74 HOH HOH . N 9 HOH T 1 12 2 HOH HOH . N 9 HOH T 2 50 50 HOH HOH . N 9 HOH T 3 76 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DG3 . . . D 4 1.53 -30.799 1.877 1 66.86 ? PG DG3 576 A 1 HETATM 2 O O1G DG3 . . . D 4 0.05 -30.56 1.63 1 67.43 ? O1G DG3 576 A 1 HETATM 3 O O2G DG3 . . . D 4 1.806 -31.732 3.016 1 67.61 ? O2G DG3 576 A 1 HETATM 4 O O3G DG3 . . . D 4 2.231 -31.154 0.595 1 64.46 ? O3G DG3 576 A 1 HETATM 5 O O3B DG3 . . . D 4 2.186 -29.463 2.528 1 66.28 ? O3B DG3 576 A 1 HETATM 6 P PB DG3 . . . D 4 1.355 -28.464 3.525 1 67.73 ? PB DG3 576 A 1 HETATM 7 O O1B DG3 . . . D 4 2.138 -28.128 4.786 1 66.88 ? O1B DG3 576 A 1 HETATM 8 O O2B DG3 . . . D 4 0.999 -27.268 2.687 1 65.37 ? O2B DG3 576 A 1 HETATM 9 O O3A DG3 . . . D 4 -0.004 -29.261 3.978 1 65.65 ? O3A DG3 576 A 1 HETATM 10 P PA DG3 . . . D 4 -0.095 -30.283 5.236 1 65.15 ? PA DG3 576 A 1 HETATM 11 O O1A DG3 . . . D 4 -0.73 -31.53 4.737 1 63.54 ? O1A DG3 576 A 1 HETATM 12 O O2A DG3 . . . D 4 1.202 -30.31 6.035 1 62.93 ? O2A DG3 576 A 1 HETATM 13 O O5' DG3 . . . D 4 -1.187 -29.698 6.246 1 70.55 ? O5' DG3 576 A 1 HETATM 14 C C5' DG3 . . . D 4 -1.812 -28.415 6.138 1 76.77 ? C5' DG3 576 A 1 HETATM 15 C C4' DG3 . . . D 4 -1.5 -27.358 7.235 1 80.76 ? C4' DG3 576 A 1 HETATM 16 O O4' DG3 . . . D 4 -1.503 -27.782 8.617 1 82.89 ? O4' DG3 576 A 1 HETATM 17 C C3' DG3 . . . D 4 -0.154 -26.645 7.061 1 82.61 ? C3' DG3 576 A 1 HETATM 18 C C2' DG3 . . . D 4 0.045 -25.96 8.408 1 83.77 ? C2' DG3 576 A 1 HETATM 19 C C1' DG3 . . . D 4 -0.82 -26.767 9.368 1 85.46 ? C1' DG3 576 A 1 HETATM 20 N N9 DG3 . . . D 4 0.116 -27.356 10.322 1 90.05 ? N9 DG3 576 A 1 HETATM 21 C C8 DG3 . . . D 4 0.867 -28.444 10.086 1 92.48 ? C8 DG3 576 A 1 HETATM 22 N N7 DG3 . . . D 4 1.656 -28.734 11.152 1 94.04 ? N7 DG3 576 A 1 HETATM 23 C C5 DG3 . . . D 4 1.403 -27.809 12.089 1 95.09 ? C5 DG3 576 A 1 HETATM 24 C C6 DG3 . . . D 4 1.901 -27.534 13.459 1 97.15 ? C6 DG3 576 A 1 HETATM 25 O O6 DG3 . . . D 4 2.77 -28.273 14.009 1 97.38 ? O6 DG3 576 A 1 HETATM 26 N N1 DG3 . . . D 4 1.369 -26.466 14.095 1 98.2 ? N1 DG3 576 A 1 HETATM 27 C C2 DG3 . . . D 4 0.437 -25.657 13.534 1 97.08 ? C2 DG3 576 A 1 HETATM 28 N N2 DG3 . . . D 4 -0.022 -24.606 14.259 1 97.27 ? N2 DG3 576 A 1 HETATM 29 N N3 DG3 . . . D 4 -0.054 -25.858 12.277 1 95.32 ? N3 DG3 576 A 1 HETATM 30 C C4 DG3 . . . D 4 0.388 -26.894 11.53 1 93.46 ? C4 DG3 576 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #