data_3AU7 # _model_server_result.job_id 6ru-j9Vle04BGnL0FkqG6Q _model_server_result.datetime_utc '2024-11-14 18:57:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3au7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":7011}' # _entry.id 3AU7 # _exptl.entry_id 3AU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.191 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description AGMATINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AU7 _cell.length_a 94.179 _cell.length_b 94.179 _cell.length_c 182.315 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H14 N4' _chem_comp.formula_weight 130.191 _chem_comp.id AG2 _chem_comp.mon_nstd_flag . _chem_comp.name AGMATINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (4-AMINOBUTYL)GUANIDINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA AG2 sing 1 n n N HN1 AG2 sing 2 n n N HN2 AG2 sing 3 n n CA CB AG2 sing 4 n n CA HA1 AG2 sing 5 n n CA HA2 AG2 sing 6 n n CB CG AG2 sing 7 n n CB HB1 AG2 sing 8 n n CB HB2 AG2 sing 9 n n CG CD AG2 sing 10 n n CG HG1 AG2 sing 11 n n CG HG2 AG2 sing 12 n n CD NE AG2 sing 13 n n CD HD1 AG2 sing 14 n n CD HD2 AG2 sing 15 n n NE CZ AG2 sing 16 n n NE HE1 AG2 sing 17 n n CZ NH1 AG2 doub 18 n n CZ NH2 AG2 sing 19 n n NH1 HH11 AG2 sing 20 n n NH2 HH21 AG2 sing 21 n n NH2 HH22 AG2 sing 22 n n # _atom_sites.entry_id 3AU7 _atom_sites.fract_transf_matrix[1][1] 0.010618 _atom_sites.fract_transf_matrix[1][2] 0.00613 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AG2 A 1 7011 7011 AG2 AG2 . C 3 HOH A 1 422 422 HOH HOH . C 3 HOH A 2 423 423 HOH HOH . C 3 HOH A 3 424 424 HOH HOH . C 3 HOH A 4 425 425 HOH HOH . C 3 HOH A 5 426 426 HOH HOH . C 3 HOH A 6 427 427 HOH HOH . C 3 HOH A 7 428 428 HOH HOH . C 3 HOH A 8 429 429 HOH HOH . C 3 HOH A 9 430 430 HOH HOH . C 3 HOH A 10 431 431 HOH HOH . C 3 HOH A 11 432 432 HOH HOH . C 3 HOH A 12 433 433 HOH HOH . C 3 HOH A 13 434 434 HOH HOH . C 3 HOH A 14 435 435 HOH HOH . C 3 HOH A 15 436 436 HOH HOH . C 3 HOH A 16 437 437 HOH HOH . C 3 HOH A 17 438 438 HOH HOH . C 3 HOH A 18 439 439 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N AG2 . . . B 2 25.66 26.852 23.474 1 41.64 ? N AG2 7011 A 1 HETATM 2 C CA AG2 . . . B 2 25.65 28.266 23.073 1 40.71 ? CA AG2 7011 A 1 HETATM 3 C CB AG2 . . . B 2 25.923 28.38 21.572 1 39.51 ? CB AG2 7011 A 1 HETATM 4 C CG AG2 . . . B 2 24.873 27.617 20.762 1 36.76 ? CG AG2 7011 A 1 HETATM 5 C CD AG2 . . . B 2 25.156 27.729 19.262 1 34.65 ? CD AG2 7011 A 1 HETATM 6 N NE AG2 . . . B 2 24.156 26.954 18.515 1 34.11 ? NE AG2 7011 A 1 HETATM 7 C CZ AG2 . . . B 2 24.308 26.743 17.21 1 32.33 ? CZ AG2 7011 A 1 HETATM 8 N NH1 AG2 . . . B 2 25.367 27.234 16.574 1 32.46 ? NH1 AG2 7011 A 1 HETATM 9 N NH2 AG2 . . . B 2 23.405 26.033 16.54 1 29.65 ? NH2 AG2 7011 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #