data_3AUX # _model_server_result.job_id J30b-hHPnyYHwJtxLjSV4g _model_server_result.datetime_utc '2024-12-26 15:22:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1006}' # _entry.id 3AUX # _exptl.entry_id 3AUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AUX _cell.length_a 126.137 _cell.length_b 126.137 _cell.length_c 71.109 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_646 y+1,x-1,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 189.2055 -109.237846 71.109 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 39 A SER 39 1_555 C MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc2 A OG1 THR 315 A THR 949 1_555 D MG MG . A MG 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc3 B O1B ADP . A ADP 1006 1_555 C MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc4 C MG MG . A MG 1007 1_555 E O HOH . A HOH 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 C MG MG . A MG 1007 1_555 E O HOH . A HOH 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 C MG MG . A MG 1007 1_555 E O HOH . A HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc7 C MG MG . A MG 1007 1_555 E O HOH . A HOH 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3AUX _atom_sites.fract_transf_matrix[1][1] 0.007928 _atom_sites.fract_transf_matrix[1][2] 0.004577 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1006 1006 ADP ADP . C 3 MG A 1 1007 1007 MG MG . D 3 MG A 1 1050 1050 MG MG . E 4 HOH A 1 1010 1010 HOH HOH . E 4 HOH A 2 1011 1011 HOH HOH . E 4 HOH A 3 1012 1012 HOH HOH . E 4 HOH A 4 1013 1013 HOH HOH . E 4 HOH A 5 1014 1014 HOH HOH . E 4 HOH A 6 1015 1015 HOH HOH . E 4 HOH A 7 1016 1016 HOH HOH . E 4 HOH A 8 1017 1017 HOH HOH . E 4 HOH A 9 1018 1018 HOH HOH . E 4 HOH A 10 1019 1019 HOH HOH . E 4 HOH A 11 1020 1020 HOH HOH . E 4 HOH A 12 1021 1021 HOH HOH . E 4 HOH A 13 1022 1022 HOH HOH . E 4 HOH A 14 1023 1023 HOH HOH . E 4 HOH A 15 1024 1024 HOH HOH . E 4 HOH A 16 1025 1025 HOH HOH . E 4 HOH A 17 1026 1026 HOH HOH . E 4 HOH A 18 1027 1027 HOH HOH . E 4 HOH A 19 1028 1028 HOH HOH . E 4 HOH A 20 1029 1029 HOH HOH . E 4 HOH A 21 1030 1030 HOH HOH . E 4 HOH A 22 1031 1031 HOH HOH . E 4 HOH A 23 1032 1032 HOH HOH . E 4 HOH A 24 1033 1033 HOH HOH . E 4 HOH A 25 1034 1034 HOH HOH . E 4 HOH A 26 1035 1035 HOH HOH . E 4 HOH A 27 1036 1036 HOH HOH . E 4 HOH A 28 1037 1037 HOH HOH . E 4 HOH A 29 1038 1038 HOH HOH . E 4 HOH A 30 1039 1039 HOH HOH . E 4 HOH A 31 1040 1040 HOH HOH . E 4 HOH A 32 1041 1041 HOH HOH . E 4 HOH A 33 1042 1042 HOH HOH . E 4 HOH A 34 1043 1043 HOH HOH . E 4 HOH A 35 1044 1044 HOH HOH . E 4 HOH A 36 1045 1045 HOH HOH . E 4 HOH A 37 1046 1046 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 86.178 -48.545 -3.015 1 99.51 ? PB ADP 1006 A 1 HETATM 2 O O1B ADP . . . B 2 87.002 -48.909 -1.866 1 100.91 ? O1B ADP 1006 A 1 HETATM 3 O O2B ADP . . . B 2 84.642 -48.591 -2.648 1 102.11 ? O2B ADP 1006 A 1 HETATM 4 O O3B ADP . . . B 2 86.391 -49.571 -4.227 1 94.48 ? O3B ADP 1006 A 1 HETATM 5 P PA ADP . . . B 2 88.105 -47.07 -3.819 1 106.59 ? PA ADP 1006 A 1 HETATM 6 O O1A ADP . . . B 2 88.8 -47.051 -2.491 1 99.21 ? O1A ADP 1006 A 1 HETATM 7 O O2A ADP . . . B 2 88.555 -48.393 -4.653 1 109.79 ? O2A ADP 1006 A 1 HETATM 8 O O3A ADP . . . B 2 86.548 -47.052 -3.496 1 102.65 ? O3A ADP 1006 A 1 HETATM 9 O O5' ADP . . . B 2 88.556 -45.69 -4.543 1 106.78 ? O5' ADP 1006 A 1 HETATM 10 C C5' ADP . . . B 2 89.889 -45.967 -4.99 1 104.67 ? C5' ADP 1006 A 1 HETATM 11 C C4' ADP . . . B 2 90.493 -44.844 -5.818 1 102.33 ? C4' ADP 1006 A 1 HETATM 12 O O4' ADP . . . B 2 90.762 -43.646 -5.051 1 99.51 ? O4' ADP 1006 A 1 HETATM 13 C C3' ADP . . . B 2 91.837 -45.301 -6.376 1 102.38 ? C3' ADP 1006 A 1 HETATM 14 O O3' ADP . . . B 2 91.648 -45.853 -7.686 1 102.7 ? O3' ADP 1006 A 1 HETATM 15 C C2' ADP . . . B 2 92.72 -44.064 -6.378 1 100.8 ? C2' ADP 1006 A 1 HETATM 16 O O2' ADP . . . B 2 93.166 -43.739 -7.71 1 102.14 ? O2' ADP 1006 A 1 HETATM 17 C C1' ADP . . . B 2 91.838 -42.964 -5.77 1 97.14 ? C1' ADP 1006 A 1 HETATM 18 N N9 ADP . . . B 2 92.663 -42.18 -4.863 1 92.54 ? N9 ADP 1006 A 1 HETATM 19 C C8 ADP . . . B 2 93.281 -42.621 -3.722 1 90.52 ? C8 ADP 1006 A 1 HETATM 20 N N7 ADP . . . B 2 93.933 -41.648 -3.163 1 89.62 ? N7 ADP 1006 A 1 HETATM 21 C C5 ADP . . . B 2 93.78 -40.527 -3.904 1 89.35 ? C5 ADP 1006 A 1 HETATM 22 C C6 ADP . . . B 2 94.234 -39.186 -3.806 1 88.81 ? C6 ADP 1006 A 1 HETATM 23 N N6 ADP . . . B 2 95.039 -38.789 -2.751 1 87.77 ? N6 ADP 1006 A 1 HETATM 24 N N1 ADP . . . B 2 93.865 -38.307 -4.769 1 89.35 ? N1 ADP 1006 A 1 HETATM 25 C C2 ADP . . . B 2 93.083 -38.67 -5.803 1 89.97 ? C2 ADP 1006 A 1 HETATM 26 N N3 ADP . . . B 2 92.635 -39.916 -5.928 1 89.18 ? N3 ADP 1006 A 1 HETATM 27 C C4 ADP . . . B 2 92.954 -40.861 -5.01 1 90.36 ? C4 ADP 1006 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #