data_3AUY # _model_server_result.job_id AS2nvX5thzn8hl1BcQZd5A _model_server_result.datetime_utc '2024-11-12 20:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3auy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1006}' # _entry.id 3AUY # _exptl.entry_id 3AUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AUY _cell.length_a 78.16 _cell.length_b 95.3 _cell.length_c 110.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 164 A CYS 164 1_555 B SG CYS 164 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OG SER 39 A SER 39 1_555 D MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc2 A OE2 GLU 313 A GLU 947 1_555 D MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc3 C O1B ADP . A ADP 1006 1_555 D MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc4 D MG MG . A MG 1007 1_555 G O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 D MG MG . A MG 1007 1_555 G O HOH . A HOH 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc6 B OG SER 39 B SER 39 1_555 F MG MG . B MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 B OE2 GLU 313 B GLU 947 1_555 F MG MG . B MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc8 E O1B ADP . B ADP 1006 1_555 F MG MG . B MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc9 F MG MG . B MG 1007 1_555 H O HOH . B HOH 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3AUY _atom_sites.fract_transf_matrix[1][1] 0.012794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 1006 1006 ADP ADP . D 3 MG A 1 1007 1007 MG MG . E 2 ADP B 1 1006 1006 ADP ADP . F 3 MG B 1 1007 1007 MG MG . G 4 HOH A 1 1011 1011 HOH HOH . G 4 HOH A 2 1012 1012 HOH HOH . G 4 HOH A 3 1013 1013 HOH HOH . G 4 HOH A 4 1014 1014 HOH HOH . G 4 HOH A 5 1015 1015 HOH HOH . G 4 HOH A 6 1016 1016 HOH HOH . G 4 HOH A 7 1017 1017 HOH HOH . G 4 HOH A 8 1018 1018 HOH HOH . G 4 HOH A 9 1019 1019 HOH HOH . G 4 HOH A 10 1020 1020 HOH HOH . G 4 HOH A 11 1021 1021 HOH HOH . G 4 HOH A 12 1022 1022 HOH HOH . G 4 HOH A 13 1023 1023 HOH HOH . G 4 HOH A 14 1024 1024 HOH HOH . G 4 HOH A 15 1025 1025 HOH HOH . G 4 HOH A 16 1026 1026 HOH HOH . G 4 HOH A 17 1027 1027 HOH HOH . G 4 HOH A 18 1028 1028 HOH HOH . G 4 HOH A 19 1029 1029 HOH HOH . G 4 HOH A 20 1030 1030 HOH HOH . G 4 HOH A 21 1031 1031 HOH HOH . G 4 HOH A 22 1032 1032 HOH HOH . G 4 HOH A 23 1033 1033 HOH HOH . G 4 HOH A 24 1034 1034 HOH HOH . G 4 HOH A 25 1035 1035 HOH HOH . G 4 HOH A 26 1036 1036 HOH HOH . G 4 HOH A 27 1037 1037 HOH HOH . G 4 HOH A 28 1038 1038 HOH HOH . G 4 HOH A 29 1039 1039 HOH HOH . G 4 HOH A 30 1040 1040 HOH HOH . G 4 HOH A 31 1041 1041 HOH HOH . G 4 HOH A 32 1042 1042 HOH HOH . G 4 HOH A 33 1043 1043 HOH HOH . G 4 HOH A 34 1044 1044 HOH HOH . G 4 HOH A 35 1045 1045 HOH HOH . G 4 HOH A 36 1046 1046 HOH HOH . G 4 HOH A 37 1047 1047 HOH HOH . G 4 HOH A 38 1048 1012 HOH HOH . G 4 HOH A 39 1049 1014 HOH HOH . H 4 HOH B 1 1010 1010 HOH HOH . H 4 HOH B 2 1011 1011 HOH HOH . H 4 HOH B 3 1012 1010 HOH HOH . H 4 HOH B 4 1013 1013 HOH HOH . H 4 HOH B 5 1015 1015 HOH HOH . H 4 HOH B 6 1016 1016 HOH HOH . H 4 HOH B 7 1017 1017 HOH HOH . H 4 HOH B 8 1018 1018 HOH HOH . H 4 HOH B 9 1019 1019 HOH HOH . H 4 HOH B 10 1020 1020 HOH HOH . H 4 HOH B 11 1021 1021 HOH HOH . H 4 HOH B 12 1022 1022 HOH HOH . H 4 HOH B 13 1023 1023 HOH HOH . H 4 HOH B 14 1024 1024 HOH HOH . H 4 HOH B 15 1025 1025 HOH HOH . H 4 HOH B 16 1026 1026 HOH HOH . H 4 HOH B 17 1027 1027 HOH HOH . H 4 HOH B 18 1028 1028 HOH HOH . H 4 HOH B 19 1029 1029 HOH HOH . H 4 HOH B 20 1030 1030 HOH HOH . H 4 HOH B 21 1031 1031 HOH HOH . H 4 HOH B 22 1032 1032 HOH HOH . H 4 HOH B 23 1033 1033 HOH HOH . H 4 HOH B 24 1034 1034 HOH HOH . H 4 HOH B 25 1035 1035 HOH HOH . H 4 HOH B 26 1036 1036 HOH HOH . H 4 HOH B 27 1037 1037 HOH HOH . H 4 HOH B 28 1038 1038 HOH HOH . H 4 HOH B 29 1039 1039 HOH HOH . H 4 HOH B 30 1040 1040 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 -104.95 -4.035 -28.241 1 55.32 ? PB ADP 1006 B 1 HETATM 2 O O1B ADP . . . E 2 -106.042 -4.019 -27.203 1 56.58 ? O1B ADP 1006 B 1 HETATM 3 O O2B ADP . . . E 2 -105.34 -4.299 -29.639 1 53.75 ? O2B ADP 1006 B 1 HETATM 4 O O3B ADP . . . E 2 -103.796 -5.091 -27.778 1 55.65 ? O3B ADP 1006 B 1 HETATM 5 P PA ADP . . . E 2 -104.62 -1.295 -27.336 1 57.43 ? PA ADP 1006 B 1 HETATM 6 O O1A ADP . . . E 2 -105.939 -0.841 -27.723 1 58.19 ? O1A ADP 1006 B 1 HETATM 7 O O2A ADP . . . E 2 -104.307 -1.514 -25.92 1 56.5 ? O2A ADP 1006 B 1 HETATM 8 O O3A ADP . . . E 2 -104.343 -2.619 -28.237 1 55.81 ? O3A ADP 1006 B 1 HETATM 9 O O5' ADP . . . E 2 -103.665 -0.244 -27.894 1 58.51 ? O5' ADP 1006 B 1 HETATM 10 C C5' ADP . . . E 2 -102.332 -0.294 -27.739 1 59.29 ? C5' ADP 1006 B 1 HETATM 11 C C4' ADP . . . E 2 -101.643 0.424 -28.833 1 59.59 ? C4' ADP 1006 B 1 HETATM 12 O O4' ADP . . . E 2 -102.072 1.83 -28.792 1 58.67 ? O4' ADP 1006 B 1 HETATM 13 C C3' ADP . . . E 2 -100.217 0.32 -28.599 1 60.16 ? C3' ADP 1006 B 1 HETATM 14 O O3' ADP . . . E 2 -100.075 -0.277 -29.886 1 62.29 ? O3' ADP 1006 B 1 HETATM 15 C C2' ADP . . . E 2 -99.725 1.737 -28.457 1 59.85 ? C2' ADP 1006 B 1 HETATM 16 O O2' ADP . . . E 2 -98.627 2.07 -29.276 1 62.43 ? O2' ADP 1006 B 1 HETATM 17 C C1' ADP . . . E 2 -100.922 2.692 -28.719 1 58.07 ? C1' ADP 1006 B 1 HETATM 18 N N9 ADP . . . E 2 -101.069 3.717 -27.629 1 55.41 ? N9 ADP 1006 B 1 HETATM 19 C C8 ADP . . . E 2 -101.139 3.539 -26.257 1 54.22 ? C8 ADP 1006 B 1 HETATM 20 N N7 ADP . . . E 2 -101.253 4.624 -25.54 1 53.89 ? N7 ADP 1006 B 1 HETATM 21 C C5 ADP . . . E 2 -101.264 5.624 -26.499 1 53.77 ? C5 ADP 1006 B 1 HETATM 22 C C6 ADP . . . E 2 -101.355 7.065 -26.412 1 52.65 ? C6 ADP 1006 B 1 HETATM 23 N N6 ADP . . . E 2 -101.46 7.667 -25.235 1 51.67 ? N6 ADP 1006 B 1 HETATM 24 N N1 ADP . . . E 2 -101.338 7.823 -27.581 1 52.84 ? N1 ADP 1006 B 1 HETATM 25 C C2 ADP . . . E 2 -101.228 7.191 -28.789 1 52.84 ? C2 ADP 1006 B 1 HETATM 26 N N3 ADP . . . E 2 -101.13 5.825 -29.011 1 52.65 ? N3 ADP 1006 B 1 HETATM 27 C C4 ADP . . . E 2 -101.147 5.09 -27.8 1 54.26 ? C4 ADP 1006 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 419 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 27 #