data_3AV9
#
_model_server_result.job_id            6HmD1BqMXFE1yQvlWX2cdA 
_model_server_result.datetime_utc      '2024-11-05 08:30:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3av9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":5}' 
#
_entry.id    3AV9 
#
_exptl.entry_id    3AV9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.052 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3AV9 
_cell.length_a            70.958 
_cell.length_b            70.958 
_cell.length_c            67.054 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AV9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 P N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C N SER 1 X SER 1 1_555 C C ASP 8 X ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale2 D N SER 1 Y SER 1 1_555 D C ASP 8 Y ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
#
_chem_comp.formula           'C2 H4 O2' 
_chem_comp.formula_weight    60.052 
_chem_comp.id                ACY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACY doub 1 n n 
C OXT ACY sing 2 n n 
C CH3 ACY sing 3 n n 
OXT HXT ACY sing 4 n n 
CH3 H1 ACY sing 5 n n 
CH3 H2 ACY sing 6 n n 
CH3 H3 ACY sing 7 n n 
#
_atom_sites.entry_id                     3AV9 
_atom_sites.fract_transf_matrix[1][1]    0.014093 
_atom_sites.fract_transf_matrix[1][2]    0.008137 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016273 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014913 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 2 2 SO4 SO4 . 
F 3 SO4 A 1 4 4 SO4 SO4 . 
G 3 SO4 A 1 6 6 SO4 SO4 . 
H 3 SO4 A 1 7 7 SO4 SO4 . 
I 4 ACY A 1 5 5 ACY ACY . 
J 4 ACY A 1 213 6 ACY ACY . 
K 5 CL A 1 1 1 CL CL . 
L 3 SO4 B 1 1 1 SO4 SO4 . 
M 3 SO4 B 1 3 3 SO4 SO4 . 
N 3 SO4 B 1 5 5 SO4 SO4 . 
O 3 SO4 B 1 8 8 SO4 SO4 . 
P 4 ACY B 1 213 3 ACY ACY . 
Q 4 ACY B 1 4 4 ACY ACY . 
R 5 CL B 1 2 2 CL CL . 
S 6 HOH A 1 11 11 HOH HOH . 
S 6 HOH A 2 12 12 HOH HOH . 
S 6 HOH A 3 13 13 HOH HOH . 
S 6 HOH A 4 14 14 HOH HOH . 
S 6 HOH A 5 18 18 HOH HOH . 
S 6 HOH A 6 21 21 HOH HOH . 
S 6 HOH A 7 22 22 HOH HOH . 
S 6 HOH A 8 23 23 HOH HOH . 
S 6 HOH A 9 24 24 HOH HOH . 
S 6 HOH A 10 26 26 HOH HOH . 
S 6 HOH A 11 214 1 HOH HOH . 
S 6 HOH A 12 215 4 HOH HOH . 
S 6 HOH A 13 216 5 HOH HOH . 
S 6 HOH A 14 217 6 HOH HOH . 
S 6 HOH A 15 218 30 HOH HOH . 
S 6 HOH A 16 219 31 HOH HOH . 
S 6 HOH A 17 220 32 HOH HOH . 
S 6 HOH A 18 221 33 HOH HOH . 
S 6 HOH A 19 222 34 HOH HOH . 
S 6 HOH A 20 223 35 HOH HOH . 
S 6 HOH A 21 224 36 HOH HOH . 
S 6 HOH A 22 225 38 HOH HOH . 
S 6 HOH A 23 226 39 HOH HOH . 
S 6 HOH A 24 227 42 HOH HOH . 
S 6 HOH A 25 228 44 HOH HOH . 
S 6 HOH A 26 229 45 HOH HOH . 
S 6 HOH A 27 230 48 HOH HOH . 
S 6 HOH A 28 231 51 HOH HOH . 
S 6 HOH A 29 232 53 HOH HOH . 
S 6 HOH A 30 233 57 HOH HOH . 
S 6 HOH A 31 234 59 HOH HOH . 
S 6 HOH A 32 235 64 HOH HOH . 
S 6 HOH A 33 236 65 HOH HOH . 
S 6 HOH A 34 237 66 HOH HOH . 
S 6 HOH A 35 238 69 HOH HOH . 
S 6 HOH A 36 239 71 HOH HOH . 
S 6 HOH A 37 240 73 HOH HOH . 
S 6 HOH A 38 241 74 HOH HOH . 
S 6 HOH A 39 242 78 HOH HOH . 
S 6 HOH A 40 243 79 HOH HOH . 
S 6 HOH A 41 244 80 HOH HOH . 
S 6 HOH A 42 245 83 HOH HOH . 
S 6 HOH A 43 246 84 HOH HOH . 
S 6 HOH A 44 247 87 HOH HOH . 
S 6 HOH A 45 248 88 HOH HOH . 
S 6 HOH A 46 249 91 HOH HOH . 
S 6 HOH A 47 250 92 HOH HOH . 
S 6 HOH A 48 251 93 HOH HOH . 
S 6 HOH A 49 252 94 HOH HOH . 
S 6 HOH A 50 253 99 HOH HOH . 
S 6 HOH A 51 254 100 HOH HOH . 
S 6 HOH A 52 255 103 HOH HOH . 
S 6 HOH A 53 256 104 HOH HOH . 
S 6 HOH A 54 257 106 HOH HOH . 
S 6 HOH A 55 258 109 HOH HOH . 
S 6 HOH A 56 259 111 HOH HOH . 
S 6 HOH A 57 260 112 HOH HOH . 
S 6 HOH A 58 261 115 HOH HOH . 
S 6 HOH A 59 262 119 HOH HOH . 
S 6 HOH A 60 263 122 HOH HOH . 
S 6 HOH A 61 264 123 HOH HOH . 
S 6 HOH A 62 265 124 HOH HOH . 
S 6 HOH A 63 266 125 HOH HOH . 
S 6 HOH A 64 267 128 HOH HOH . 
S 6 HOH A 65 268 129 HOH HOH . 
S 6 HOH A 66 269 130 HOH HOH . 
S 6 HOH A 67 270 131 HOH HOH . 
S 6 HOH A 68 271 132 HOH HOH . 
S 6 HOH A 69 272 137 HOH HOH . 
S 6 HOH A 70 273 138 HOH HOH . 
S 6 HOH A 71 274 139 HOH HOH . 
S 6 HOH A 72 275 141 HOH HOH . 
S 6 HOH A 73 276 147 HOH HOH . 
S 6 HOH A 74 277 148 HOH HOH . 
S 6 HOH A 75 278 149 HOH HOH . 
S 6 HOH A 76 279 150 HOH HOH . 
S 6 HOH A 77 280 151 HOH HOH . 
S 6 HOH A 78 281 160 HOH HOH . 
S 6 HOH A 79 282 161 HOH HOH . 
S 6 HOH A 80 283 162 HOH HOH . 
S 6 HOH A 81 284 164 HOH HOH . 
S 6 HOH A 82 285 165 HOH HOH . 
S 6 HOH A 83 286 166 HOH HOH . 
S 6 HOH A 84 287 168 HOH HOH . 
S 6 HOH A 85 288 170 HOH HOH . 
S 6 HOH A 86 289 171 HOH HOH . 
S 6 HOH A 87 290 173 HOH HOH . 
S 6 HOH A 88 291 176 HOH HOH . 
S 6 HOH A 89 292 177 HOH HOH . 
T 6 HOH B 1 7 7 HOH HOH . 
T 6 HOH B 2 9 9 HOH HOH . 
T 6 HOH B 3 10 10 HOH HOH . 
T 6 HOH B 4 15 15 HOH HOH . 
T 6 HOH B 5 16 16 HOH HOH . 
T 6 HOH B 6 17 17 HOH HOH . 
T 6 HOH B 7 19 19 HOH HOH . 
T 6 HOH B 8 20 20 HOH HOH . 
T 6 HOH B 9 25 25 HOH HOH . 
T 6 HOH B 10 27 27 HOH HOH . 
T 6 HOH B 11 28 28 HOH HOH . 
T 6 HOH B 12 29 29 HOH HOH . 
T 6 HOH B 13 214 2 HOH HOH . 
T 6 HOH B 14 215 3 HOH HOH . 
T 6 HOH B 15 216 8 HOH HOH . 
T 6 HOH B 16 217 37 HOH HOH . 
T 6 HOH B 17 218 40 HOH HOH . 
T 6 HOH B 18 219 41 HOH HOH . 
T 6 HOH B 19 220 43 HOH HOH . 
T 6 HOH B 20 221 46 HOH HOH . 
T 6 HOH B 21 222 47 HOH HOH . 
T 6 HOH B 22 223 49 HOH HOH . 
T 6 HOH B 23 224 50 HOH HOH . 
T 6 HOH B 24 225 52 HOH HOH . 
T 6 HOH B 25 226 54 HOH HOH . 
T 6 HOH B 26 227 55 HOH HOH . 
T 6 HOH B 27 228 56 HOH HOH . 
T 6 HOH B 28 229 58 HOH HOH . 
T 6 HOH B 29 230 60 HOH HOH . 
T 6 HOH B 30 231 61 HOH HOH . 
T 6 HOH B 31 232 62 HOH HOH . 
T 6 HOH B 32 233 63 HOH HOH . 
T 6 HOH B 33 234 67 HOH HOH . 
T 6 HOH B 34 235 68 HOH HOH . 
T 6 HOH B 35 236 70 HOH HOH . 
T 6 HOH B 36 237 72 HOH HOH . 
T 6 HOH B 37 238 75 HOH HOH . 
T 6 HOH B 38 239 76 HOH HOH . 
T 6 HOH B 39 240 77 HOH HOH . 
T 6 HOH B 40 241 81 HOH HOH . 
T 6 HOH B 41 242 82 HOH HOH . 
T 6 HOH B 42 243 85 HOH HOH . 
T 6 HOH B 43 244 86 HOH HOH . 
T 6 HOH B 44 245 89 HOH HOH . 
T 6 HOH B 45 246 90 HOH HOH . 
T 6 HOH B 46 247 95 HOH HOH . 
T 6 HOH B 47 248 96 HOH HOH . 
T 6 HOH B 48 249 97 HOH HOH . 
T 6 HOH B 49 250 98 HOH HOH . 
T 6 HOH B 50 251 101 HOH HOH . 
T 6 HOH B 51 252 102 HOH HOH . 
T 6 HOH B 52 253 105 HOH HOH . 
T 6 HOH B 53 254 107 HOH HOH . 
T 6 HOH B 54 255 108 HOH HOH . 
T 6 HOH B 55 256 110 HOH HOH . 
T 6 HOH B 56 257 113 HOH HOH . 
T 6 HOH B 57 258 114 HOH HOH . 
T 6 HOH B 58 259 116 HOH HOH . 
T 6 HOH B 59 260 117 HOH HOH . 
T 6 HOH B 60 261 118 HOH HOH . 
T 6 HOH B 61 262 120 HOH HOH . 
T 6 HOH B 62 263 121 HOH HOH . 
T 6 HOH B 63 264 126 HOH HOH . 
T 6 HOH B 64 265 127 HOH HOH . 
T 6 HOH B 65 266 133 HOH HOH . 
T 6 HOH B 66 267 134 HOH HOH . 
T 6 HOH B 67 268 135 HOH HOH . 
T 6 HOH B 68 269 136 HOH HOH . 
T 6 HOH B 69 270 140 HOH HOH . 
T 6 HOH B 70 271 142 HOH HOH . 
T 6 HOH B 71 272 143 HOH HOH . 
T 6 HOH B 72 273 144 HOH HOH . 
T 6 HOH B 73 274 145 HOH HOH . 
T 6 HOH B 74 275 146 HOH HOH . 
T 6 HOH B 75 276 152 HOH HOH . 
T 6 HOH B 76 277 153 HOH HOH . 
T 6 HOH B 77 278 154 HOH HOH . 
T 6 HOH B 78 279 155 HOH HOH . 
T 6 HOH B 79 280 156 HOH HOH . 
T 6 HOH B 80 281 157 HOH HOH . 
T 6 HOH B 81 282 158 HOH HOH . 
T 6 HOH B 82 283 159 HOH HOH . 
T 6 HOH B 83 284 163 HOH HOH . 
T 6 HOH B 84 285 169 HOH HOH . 
T 6 HOH B 85 286 172 HOH HOH . 
T 6 HOH B 86 287 174 HOH HOH . 
T 6 HOH B 87 288 175 HOH HOH . 
U 6 HOH Y 1 167 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACY . . . I 4 20.777 -37.381 -4.748 1 30.9 ? C ACY 5 A 1 
HETATM 2 O O ACY . . . I 4 20.106 -36.992 -3.702 1 29.78 ? O ACY 5 A 1 
HETATM 3 O OXT ACY . . . I 4 22.121 -37.536 -4.772 1 32.55 ? OXT ACY 5 A 1 
HETATM 4 C CH3 ACY . . . I 4 20.019 -37.741 -6.019 1 30.48 ? CH3 ACY 5 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#