data_3AVA # _model_server_result.job_id 4VpqZqHYCX8dyxr1klZEKg _model_server_result.datetime_utc '2024-11-22 08:11:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ava # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":213}' # _entry.id 3AVA # _exptl.entry_id 3AVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AVA _cell.length_a 70.922 _cell.length_b 70.922 _cell.length_c 67.198 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C N ALA 1 X ALA 1 1_555 C C ASP 8 X ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 D N ALA 1 Y ALA 1 1_555 D C ASP 8 Y ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 3AVA _atom_sites.fract_transf_matrix[1][1] 0.0141 _atom_sites.fract_transf_matrix[1][2] 0.008141 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 2 2 SO4 SO4 . F 3 SO4 A 1 4 4 SO4 SO4 . G 3 SO4 A 1 6 6 SO4 SO4 . H 3 SO4 A 1 8 8 SO4 SO4 . I 4 CL A 1 1 1 CL CL . J 3 SO4 B 1 1 1 SO4 SO4 . K 3 SO4 B 1 3 3 SO4 SO4 . L 3 SO4 B 1 5 5 SO4 SO4 . M 3 SO4 B 1 7 7 SO4 SO4 . N 5 ACY B 1 213 1 ACY ACY . O 5 ACY B 1 2 2 ACY ACY . P 6 HOH A 1 7 7 HOH HOH . P 6 HOH A 2 12 12 HOH HOH . P 6 HOH A 3 13 13 HOH HOH . P 6 HOH A 4 14 14 HOH HOH . P 6 HOH A 5 15 15 HOH HOH . P 6 HOH A 6 17 17 HOH HOH . P 6 HOH A 7 19 19 HOH HOH . P 6 HOH A 8 22 22 HOH HOH . P 6 HOH A 9 23 23 HOH HOH . P 6 HOH A 10 24 24 HOH HOH . P 6 HOH A 11 25 25 HOH HOH . P 6 HOH A 12 27 27 HOH HOH . P 6 HOH A 13 213 2 HOH HOH . P 6 HOH A 14 214 6 HOH HOH . P 6 HOH A 15 215 31 HOH HOH . P 6 HOH A 16 216 32 HOH HOH . P 6 HOH A 17 217 33 HOH HOH . P 6 HOH A 18 218 34 HOH HOH . P 6 HOH A 19 219 35 HOH HOH . P 6 HOH A 20 220 36 HOH HOH . P 6 HOH A 21 221 37 HOH HOH . P 6 HOH A 22 222 39 HOH HOH . P 6 HOH A 23 223 40 HOH HOH . P 6 HOH A 24 224 43 HOH HOH . P 6 HOH A 25 225 45 HOH HOH . P 6 HOH A 26 226 46 HOH HOH . P 6 HOH A 27 227 49 HOH HOH . P 6 HOH A 28 228 52 HOH HOH . P 6 HOH A 29 229 54 HOH HOH . P 6 HOH A 30 230 58 HOH HOH . P 6 HOH A 31 231 60 HOH HOH . P 6 HOH A 32 232 65 HOH HOH . P 6 HOH A 33 233 66 HOH HOH . P 6 HOH A 34 234 67 HOH HOH . P 6 HOH A 35 235 68 HOH HOH . P 6 HOH A 36 236 71 HOH HOH . P 6 HOH A 37 237 73 HOH HOH . P 6 HOH A 38 238 75 HOH HOH . P 6 HOH A 39 239 76 HOH HOH . P 6 HOH A 40 240 80 HOH HOH . P 6 HOH A 41 241 81 HOH HOH . P 6 HOH A 42 242 82 HOH HOH . P 6 HOH A 43 243 85 HOH HOH . P 6 HOH A 44 244 86 HOH HOH . P 6 HOH A 45 245 89 HOH HOH . P 6 HOH A 46 246 90 HOH HOH . P 6 HOH A 47 247 93 HOH HOH . P 6 HOH A 48 248 94 HOH HOH . P 6 HOH A 49 249 95 HOH HOH . P 6 HOH A 50 250 96 HOH HOH . P 6 HOH A 51 251 97 HOH HOH . P 6 HOH A 52 252 102 HOH HOH . P 6 HOH A 53 253 103 HOH HOH . P 6 HOH A 54 254 106 HOH HOH . P 6 HOH A 55 255 107 HOH HOH . P 6 HOH A 56 256 110 HOH HOH . P 6 HOH A 57 257 113 HOH HOH . P 6 HOH A 58 258 114 HOH HOH . P 6 HOH A 59 259 117 HOH HOH . P 6 HOH A 60 260 118 HOH HOH . P 6 HOH A 61 261 121 HOH HOH . P 6 HOH A 62 262 125 HOH HOH . P 6 HOH A 63 263 128 HOH HOH . P 6 HOH A 64 264 129 HOH HOH . P 6 HOH A 65 265 130 HOH HOH . P 6 HOH A 66 266 131 HOH HOH . P 6 HOH A 67 267 132 HOH HOH . P 6 HOH A 68 268 137 HOH HOH . P 6 HOH A 69 269 138 HOH HOH . P 6 HOH A 70 270 139 HOH HOH . P 6 HOH A 71 271 140 HOH HOH . P 6 HOH A 72 272 141 HOH HOH . P 6 HOH A 73 273 142 HOH HOH . P 6 HOH A 74 274 143 HOH HOH . P 6 HOH A 75 275 144 HOH HOH . P 6 HOH A 76 276 145 HOH HOH . P 6 HOH A 77 277 152 HOH HOH . P 6 HOH A 78 278 153 HOH HOH . P 6 HOH A 79 279 154 HOH HOH . P 6 HOH A 80 280 157 HOH HOH . P 6 HOH A 81 281 161 HOH HOH . P 6 HOH A 82 282 162 HOH HOH . P 6 HOH A 83 283 171 HOH HOH . P 6 HOH A 84 284 172 HOH HOH . P 6 HOH A 85 285 174 HOH HOH . P 6 HOH A 86 286 175 HOH HOH . P 6 HOH A 87 287 177 HOH HOH . P 6 HOH A 88 288 184 HOH HOH . Q 6 HOH B 1 4 4 HOH HOH . Q 6 HOH B 2 8 8 HOH HOH . Q 6 HOH B 3 9 9 HOH HOH . Q 6 HOH B 4 10 10 HOH HOH . Q 6 HOH B 5 11 11 HOH HOH . Q 6 HOH B 6 16 16 HOH HOH . Q 6 HOH B 7 18 18 HOH HOH . Q 6 HOH B 8 20 20 HOH HOH . Q 6 HOH B 9 21 21 HOH HOH . Q 6 HOH B 10 26 26 HOH HOH . Q 6 HOH B 11 28 28 HOH HOH . Q 6 HOH B 12 29 29 HOH HOH . Q 6 HOH B 13 214 1 HOH HOH . Q 6 HOH B 14 215 3 HOH HOH . Q 6 HOH B 15 216 5 HOH HOH . Q 6 HOH B 16 217 30 HOH HOH . Q 6 HOH B 17 218 38 HOH HOH . Q 6 HOH B 18 219 41 HOH HOH . Q 6 HOH B 19 220 42 HOH HOH . Q 6 HOH B 20 221 44 HOH HOH . Q 6 HOH B 21 222 47 HOH HOH . Q 6 HOH B 22 223 48 HOH HOH . Q 6 HOH B 23 224 50 HOH HOH . Q 6 HOH B 24 225 51 HOH HOH . Q 6 HOH B 25 226 53 HOH HOH . Q 6 HOH B 26 227 55 HOH HOH . Q 6 HOH B 27 228 56 HOH HOH . Q 6 HOH B 28 229 57 HOH HOH . Q 6 HOH B 29 230 59 HOH HOH . Q 6 HOH B 30 231 61 HOH HOH . Q 6 HOH B 31 232 62 HOH HOH . Q 6 HOH B 32 233 63 HOH HOH . Q 6 HOH B 33 234 64 HOH HOH . Q 6 HOH B 34 235 69 HOH HOH . Q 6 HOH B 35 236 70 HOH HOH . Q 6 HOH B 36 237 72 HOH HOH . Q 6 HOH B 37 238 74 HOH HOH . Q 6 HOH B 38 239 77 HOH HOH . Q 6 HOH B 39 240 78 HOH HOH . Q 6 HOH B 40 241 79 HOH HOH . Q 6 HOH B 41 242 83 HOH HOH . Q 6 HOH B 42 243 84 HOH HOH . Q 6 HOH B 43 244 87 HOH HOH . Q 6 HOH B 44 245 88 HOH HOH . Q 6 HOH B 45 246 91 HOH HOH . Q 6 HOH B 46 247 92 HOH HOH . Q 6 HOH B 47 248 98 HOH HOH . Q 6 HOH B 48 249 99 HOH HOH . Q 6 HOH B 49 250 100 HOH HOH . Q 6 HOH B 50 251 101 HOH HOH . Q 6 HOH B 51 252 104 HOH HOH . Q 6 HOH B 52 253 105 HOH HOH . Q 6 HOH B 53 254 108 HOH HOH . Q 6 HOH B 54 255 109 HOH HOH . Q 6 HOH B 55 256 111 HOH HOH . Q 6 HOH B 56 257 112 HOH HOH . Q 6 HOH B 57 258 115 HOH HOH . Q 6 HOH B 58 259 116 HOH HOH . Q 6 HOH B 59 260 119 HOH HOH . Q 6 HOH B 60 261 120 HOH HOH . Q 6 HOH B 61 262 122 HOH HOH . Q 6 HOH B 62 263 123 HOH HOH . Q 6 HOH B 63 264 124 HOH HOH . Q 6 HOH B 64 265 126 HOH HOH . Q 6 HOH B 65 266 127 HOH HOH . Q 6 HOH B 66 267 133 HOH HOH . Q 6 HOH B 67 268 134 HOH HOH . Q 6 HOH B 68 269 135 HOH HOH . Q 6 HOH B 69 270 136 HOH HOH . Q 6 HOH B 70 271 146 HOH HOH . Q 6 HOH B 71 272 147 HOH HOH . Q 6 HOH B 72 273 148 HOH HOH . Q 6 HOH B 73 274 149 HOH HOH . Q 6 HOH B 74 275 150 HOH HOH . Q 6 HOH B 75 276 151 HOH HOH . Q 6 HOH B 76 277 155 HOH HOH . Q 6 HOH B 77 278 156 HOH HOH . Q 6 HOH B 78 279 158 HOH HOH . Q 6 HOH B 79 280 159 HOH HOH . Q 6 HOH B 80 281 160 HOH HOH . Q 6 HOH B 81 282 163 HOH HOH . Q 6 HOH B 82 283 164 HOH HOH . Q 6 HOH B 83 284 165 HOH HOH . Q 6 HOH B 84 285 166 HOH HOH . Q 6 HOH B 85 286 167 HOH HOH . Q 6 HOH B 86 287 168 HOH HOH . Q 6 HOH B 87 288 169 HOH HOH . Q 6 HOH B 88 289 170 HOH HOH . Q 6 HOH B 89 290 173 HOH HOH . Q 6 HOH B 90 291 176 HOH HOH . Q 6 HOH B 91 292 178 HOH HOH . Q 6 HOH B 92 293 179 HOH HOH . Q 6 HOH B 93 294 180 HOH HOH . Q 6 HOH B 94 295 181 HOH HOH . Q 6 HOH B 95 296 182 HOH HOH . Q 6 HOH B 96 297 183 HOH HOH . Q 6 HOH B 97 298 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . N 5 8.552 -25.366 -0.51 1 50.64 ? C ACY 213 B 1 HETATM 2 O O ACY . . . N 5 8.231 -24.981 0.619 1 49.34 ? O ACY 213 B 1 HETATM 3 O OXT ACY . . . N 5 9.753 -25.498 -0.915 1 51.03 ? OXT ACY 213 B 1 HETATM 4 C CH3 ACY . . . N 5 7.371 -25.571 -1.374 1 48.59 ? CH3 ACY 213 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #