data_3AVI # _model_server_result.job_id F2J2xESaNv02a1q5C0XFRQ _model_server_result.datetime_utc '2024-11-05 08:11:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3avi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":5}' # _entry.id 3AVI # _exptl.entry_id 3AVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AVI _cell.length_a 70.995 _cell.length_b 70.995 _cell.length_c 66.996 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C N SER 1 D SER 1 1_555 C C ASP 8 D ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 D N SER 1 F SER 1 1_555 D C ASP 8 F ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 297 n n S O2 SO4 doub 298 n n S O3 SO4 sing 299 n n S O4 SO4 sing 300 n n # _atom_sites.entry_id 3AVI _atom_sites.fract_transf_matrix[1][1] 0.014086 _atom_sites.fract_transf_matrix[1][2] 0.008132 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 2 2 SO4 SO4 . F 3 SO4 A 1 4 4 SO4 SO4 . G 3 SO4 A 1 6 6 SO4 SO4 . H 3 SO4 A 1 7 7 SO4 SO4 . I 4 CL A 1 1 1 CL CL . J 5 ACY A 1 213 1 ACY ACY . K 5 ACY A 1 3 3 ACY ACY . L 3 SO4 B 1 1 1 SO4 SO4 . M 3 SO4 B 1 3 3 SO4 SO4 . N 3 SO4 B 1 5 5 SO4 SO4 . O 3 SO4 B 1 8 8 SO4 SO4 . P 5 ACY B 1 2 2 ACY ACY . Q 5 ACY B 1 4 4 ACY ACY . R 6 HOH A 1 5 5 HOH HOH . R 6 HOH A 2 8 8 HOH HOH . R 6 HOH A 3 10 10 HOH HOH . R 6 HOH A 4 12 12 HOH HOH . R 6 HOH A 5 14 14 HOH HOH . R 6 HOH A 6 15 15 HOH HOH . R 6 HOH A 7 16 16 HOH HOH . R 6 HOH A 8 17 17 HOH HOH . R 6 HOH A 9 19 19 HOH HOH . R 6 HOH A 10 20 20 HOH HOH . R 6 HOH A 11 21 21 HOH HOH . R 6 HOH A 12 22 22 HOH HOH . R 6 HOH A 13 24 24 HOH HOH . R 6 HOH A 14 214 4 HOH HOH . R 6 HOH A 15 215 7 HOH HOH . R 6 HOH A 16 216 31 HOH HOH . R 6 HOH A 17 217 33 HOH HOH . R 6 HOH A 18 218 34 HOH HOH . R 6 HOH A 19 219 37 HOH HOH . R 6 HOH A 20 220 38 HOH HOH . R 6 HOH A 21 221 40 HOH HOH . R 6 HOH A 22 222 41 HOH HOH . R 6 HOH A 23 223 42 HOH HOH . R 6 HOH A 24 224 45 HOH HOH . R 6 HOH A 25 225 47 HOH HOH . R 6 HOH A 26 226 48 HOH HOH . R 6 HOH A 27 227 51 HOH HOH . R 6 HOH A 28 228 53 HOH HOH . R 6 HOH A 29 229 54 HOH HOH . R 6 HOH A 30 230 55 HOH HOH . R 6 HOH A 31 231 58 HOH HOH . R 6 HOH A 32 232 60 HOH HOH . R 6 HOH A 33 233 61 HOH HOH . R 6 HOH A 34 234 62 HOH HOH . R 6 HOH A 35 235 63 HOH HOH . R 6 HOH A 36 236 67 HOH HOH . R 6 HOH A 37 237 68 HOH HOH . R 6 HOH A 38 238 69 HOH HOH . R 6 HOH A 39 239 71 HOH HOH . R 6 HOH A 40 240 73 HOH HOH . R 6 HOH A 41 241 77 HOH HOH . R 6 HOH A 42 242 80 HOH HOH . R 6 HOH A 43 243 82 HOH HOH . R 6 HOH A 44 244 85 HOH HOH . R 6 HOH A 45 245 87 HOH HOH . R 6 HOH A 46 246 90 HOH HOH . R 6 HOH A 47 247 91 HOH HOH . R 6 HOH A 48 248 92 HOH HOH . R 6 HOH A 49 249 94 HOH HOH . R 6 HOH A 50 250 96 HOH HOH . R 6 HOH A 51 251 100 HOH HOH . R 6 HOH A 52 252 105 HOH HOH . R 6 HOH A 53 253 106 HOH HOH . R 6 HOH A 54 254 108 HOH HOH . R 6 HOH A 55 255 109 HOH HOH . R 6 HOH A 56 256 112 HOH HOH . R 6 HOH A 57 257 113 HOH HOH . R 6 HOH A 58 258 114 HOH HOH . R 6 HOH A 59 259 115 HOH HOH . R 6 HOH A 60 260 116 HOH HOH . R 6 HOH A 61 261 117 HOH HOH . R 6 HOH A 62 262 118 HOH HOH . R 6 HOH A 63 263 120 HOH HOH . R 6 HOH A 64 264 121 HOH HOH . R 6 HOH A 65 265 124 HOH HOH . R 6 HOH A 66 266 125 HOH HOH . R 6 HOH A 67 267 126 HOH HOH . R 6 HOH A 68 268 127 HOH HOH . R 6 HOH A 69 269 128 HOH HOH . R 6 HOH A 70 270 129 HOH HOH . R 6 HOH A 71 271 130 HOH HOH . R 6 HOH A 72 272 131 HOH HOH . R 6 HOH A 73 273 132 HOH HOH . R 6 HOH A 74 274 143 HOH HOH . R 6 HOH A 75 275 145 HOH HOH . R 6 HOH A 76 276 150 HOH HOH . R 6 HOH A 77 277 151 HOH HOH . R 6 HOH A 78 278 152 HOH HOH . R 6 HOH A 79 279 155 HOH HOH . R 6 HOH A 80 280 157 HOH HOH . R 6 HOH A 81 281 158 HOH HOH . R 6 HOH A 82 282 159 HOH HOH . R 6 HOH A 83 284 163 HOH HOH . R 6 HOH A 84 285 164 HOH HOH . R 6 HOH A 85 286 166 HOH HOH . R 6 HOH A 86 287 167 HOH HOH . R 6 HOH A 87 288 170 HOH HOH . R 6 HOH A 88 289 171 HOH HOH . R 6 HOH A 89 290 172 HOH HOH . R 6 HOH A 90 291 173 HOH HOH . R 6 HOH A 91 292 174 HOH HOH . S 6 HOH B 1 6 6 HOH HOH . S 6 HOH B 2 9 9 HOH HOH . S 6 HOH B 3 11 11 HOH HOH . S 6 HOH B 4 13 13 HOH HOH . S 6 HOH B 5 18 18 HOH HOH . S 6 HOH B 6 23 23 HOH HOH . S 6 HOH B 7 25 25 HOH HOH . S 6 HOH B 8 26 26 HOH HOH . S 6 HOH B 9 27 27 HOH HOH . S 6 HOH B 10 28 28 HOH HOH . S 6 HOH B 11 29 29 HOH HOH . S 6 HOH B 12 213 1 HOH HOH . S 6 HOH B 13 214 2 HOH HOH . S 6 HOH B 14 215 3 HOH HOH . S 6 HOH B 15 216 30 HOH HOH . S 6 HOH B 16 217 32 HOH HOH . S 6 HOH B 17 218 35 HOH HOH . S 6 HOH B 18 219 36 HOH HOH . S 6 HOH B 19 220 39 HOH HOH . S 6 HOH B 20 221 43 HOH HOH . S 6 HOH B 21 222 44 HOH HOH . S 6 HOH B 22 223 46 HOH HOH . S 6 HOH B 23 224 49 HOH HOH . S 6 HOH B 24 225 50 HOH HOH . S 6 HOH B 25 226 52 HOH HOH . S 6 HOH B 26 227 56 HOH HOH . S 6 HOH B 27 228 57 HOH HOH . S 6 HOH B 28 229 59 HOH HOH . S 6 HOH B 29 230 64 HOH HOH . S 6 HOH B 30 231 65 HOH HOH . S 6 HOH B 31 232 66 HOH HOH . S 6 HOH B 32 233 72 HOH HOH . S 6 HOH B 33 234 74 HOH HOH . S 6 HOH B 34 235 75 HOH HOH . S 6 HOH B 35 236 76 HOH HOH . S 6 HOH B 36 237 78 HOH HOH . S 6 HOH B 37 238 79 HOH HOH . S 6 HOH B 38 239 81 HOH HOH . S 6 HOH B 39 240 83 HOH HOH . S 6 HOH B 40 241 86 HOH HOH . S 6 HOH B 41 242 88 HOH HOH . S 6 HOH B 42 243 93 HOH HOH . S 6 HOH B 43 244 95 HOH HOH . S 6 HOH B 44 245 97 HOH HOH . S 6 HOH B 45 246 98 HOH HOH . S 6 HOH B 46 247 99 HOH HOH . S 6 HOH B 47 248 101 HOH HOH . S 6 HOH B 48 249 103 HOH HOH . S 6 HOH B 49 250 104 HOH HOH . S 6 HOH B 50 251 107 HOH HOH . S 6 HOH B 51 252 110 HOH HOH . S 6 HOH B 52 253 111 HOH HOH . S 6 HOH B 53 254 119 HOH HOH . S 6 HOH B 54 255 122 HOH HOH . S 6 HOH B 55 256 123 HOH HOH . S 6 HOH B 56 257 133 HOH HOH . S 6 HOH B 57 258 134 HOH HOH . S 6 HOH B 58 259 135 HOH HOH . S 6 HOH B 59 260 136 HOH HOH . S 6 HOH B 60 261 137 HOH HOH . S 6 HOH B 61 262 138 HOH HOH . S 6 HOH B 62 263 139 HOH HOH . S 6 HOH B 63 264 140 HOH HOH . S 6 HOH B 64 265 141 HOH HOH . S 6 HOH B 65 266 142 HOH HOH . S 6 HOH B 66 267 144 HOH HOH . S 6 HOH B 67 268 146 HOH HOH . S 6 HOH B 68 269 147 HOH HOH . S 6 HOH B 69 270 149 HOH HOH . S 6 HOH B 70 271 153 HOH HOH . S 6 HOH B 71 272 154 HOH HOH . S 6 HOH B 72 273 161 HOH HOH . S 6 HOH B 73 274 162 HOH HOH . S 6 HOH B 74 275 165 HOH HOH . S 6 HOH B 75 276 168 HOH HOH . S 6 HOH B 76 277 169 HOH HOH . S 6 HOH B 77 278 175 HOH HOH . S 6 HOH B 78 279 176 HOH HOH . S 6 HOH B 79 283 160 HOH HOH . T 6 HOH D 1 89 89 HOH HOH . T 6 HOH D 2 102 102 HOH HOH . T 6 HOH D 3 156 156 HOH HOH . U 6 HOH F 1 70 70 HOH HOH . U 6 HOH F 2 84 84 HOH HOH . U 6 HOH F 3 148 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . N 3 40.026 -31.234 6.466 0.7 18.19 ? S SO4 5 B 1 HETATM 2 O O1 SO4 . . . N 3 41.382 -31.169 6.944 0.7 20.68 ? O1 SO4 5 B 1 HETATM 3 O O2 SO4 . . . N 3 40.008 -30.355 5.277 0.7 14.59 ? O2 SO4 5 B 1 HETATM 4 O O3 SO4 . . . N 3 39.779 -32.59 6.09 0.7 19.41 ? O3 SO4 5 B 1 HETATM 5 O O4 SO4 . . . N 3 39.129 -30.865 7.591 0.7 18.3 ? O4 SO4 5 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #