data_3AVL
#
_model_server_result.job_id            GVJhtWR299vaN_o34OsMOQ 
_model_server_result.datetime_utc      '2024-11-05 08:11:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3avl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1}' 
#
_entry.id    3AVL 
#
_exptl.entry_id    3AVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.052 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3AVL 
_cell.length_a            70.484 
_cell.length_b            70.484 
_cell.length_c            66.865 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C N ALA 1 F ALA 1 1_555 C C ASP 8 F ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 D N ALA 1 E ALA 1 1_555 D C ASP 8 E ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C2 H4 O2' 
_chem_comp.formula_weight    60.052 
_chem_comp.id                ACY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACY doub 1 n n 
C OXT ACY sing 2 n n 
C CH3 ACY sing 3 n n 
OXT HXT ACY sing 4 n n 
CH3 H1 ACY sing 5 n n 
CH3 H2 ACY sing 6 n n 
CH3 H3 ACY sing 7 n n 
#
_atom_sites.entry_id                     3AVL 
_atom_sites.fract_transf_matrix[1][1]    0.014188 
_atom_sites.fract_transf_matrix[1][2]    0.008191 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016382 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 2 2 SO4 SO4 . 
F 3 SO4 A 1 4 4 SO4 SO4 . 
G 3 SO4 A 1 5 5 SO4 SO4 . 
H 3 SO4 A 1 7 7 SO4 SO4 . 
I 4 CL A 1 213 2 CL CL . 
J 5 ACY A 1 1 1 ACY ACY . 
K 5 ACY A 1 214 2 ACY ACY . 
L 3 SO4 B 1 1 1 SO4 SO4 . 
M 3 SO4 B 1 3 3 SO4 SO4 . 
N 3 SO4 B 1 6 6 SO4 SO4 . 
O 3 SO4 B 1 8 8 SO4 SO4 . 
P 4 CL B 1 213 1 CL CL . 
Q 6 HOH A 1 3 3 HOH HOH . 
Q 6 HOH A 2 6 6 HOH HOH . 
Q 6 HOH A 3 9 9 HOH HOH . 
Q 6 HOH A 4 11 11 HOH HOH . 
Q 6 HOH A 5 12 12 HOH HOH . 
Q 6 HOH A 6 13 13 HOH HOH . 
Q 6 HOH A 7 14 14 HOH HOH . 
Q 6 HOH A 8 17 17 HOH HOH . 
Q 6 HOH A 9 20 20 HOH HOH . 
Q 6 HOH A 10 23 23 HOH HOH . 
Q 6 HOH A 11 24 24 HOH HOH . 
Q 6 HOH A 12 25 25 HOH HOH . 
Q 6 HOH A 13 28 28 HOH HOH . 
Q 6 HOH A 14 215 1 HOH HOH . 
Q 6 HOH A 15 216 30 HOH HOH . 
Q 6 HOH A 16 217 32 HOH HOH . 
Q 6 HOH A 17 218 34 HOH HOH . 
Q 6 HOH A 18 219 35 HOH HOH . 
Q 6 HOH A 19 220 37 HOH HOH . 
Q 6 HOH A 20 221 40 HOH HOH . 
Q 6 HOH A 21 222 43 HOH HOH . 
Q 6 HOH A 22 223 44 HOH HOH . 
Q 6 HOH A 23 224 45 HOH HOH . 
Q 6 HOH A 24 225 46 HOH HOH . 
Q 6 HOH A 25 226 47 HOH HOH . 
Q 6 HOH A 26 227 50 HOH HOH . 
Q 6 HOH A 27 228 51 HOH HOH . 
Q 6 HOH A 28 229 52 HOH HOH . 
Q 6 HOH A 29 230 53 HOH HOH . 
Q 6 HOH A 30 231 55 HOH HOH . 
Q 6 HOH A 31 232 56 HOH HOH . 
Q 6 HOH A 32 233 60 HOH HOH . 
Q 6 HOH A 33 234 63 HOH HOH . 
Q 6 HOH A 34 235 65 HOH HOH . 
Q 6 HOH A 35 236 67 HOH HOH . 
Q 6 HOH A 36 237 69 HOH HOH . 
Q 6 HOH A 37 238 70 HOH HOH . 
Q 6 HOH A 38 239 71 HOH HOH . 
Q 6 HOH A 39 240 72 HOH HOH . 
Q 6 HOH A 40 241 73 HOH HOH . 
Q 6 HOH A 41 242 78 HOH HOH . 
Q 6 HOH A 42 243 80 HOH HOH . 
Q 6 HOH A 43 244 82 HOH HOH . 
Q 6 HOH A 44 245 90 HOH HOH . 
Q 6 HOH A 45 246 91 HOH HOH . 
Q 6 HOH A 46 247 92 HOH HOH . 
Q 6 HOH A 47 248 93 HOH HOH . 
Q 6 HOH A 48 249 102 HOH HOH . 
Q 6 HOH A 49 250 106 HOH HOH . 
Q 6 HOH A 50 251 108 HOH HOH . 
Q 6 HOH A 51 252 112 HOH HOH . 
Q 6 HOH A 52 253 114 HOH HOH . 
Q 6 HOH A 53 254 115 HOH HOH . 
Q 6 HOH A 54 255 116 HOH HOH . 
Q 6 HOH A 55 256 117 HOH HOH . 
Q 6 HOH A 56 257 123 HOH HOH . 
Q 6 HOH A 57 258 124 HOH HOH . 
Q 6 HOH A 58 259 125 HOH HOH . 
Q 6 HOH A 59 260 126 HOH HOH . 
Q 6 HOH A 60 261 127 HOH HOH . 
Q 6 HOH A 61 262 128 HOH HOH . 
Q 6 HOH A 62 263 129 HOH HOH . 
Q 6 HOH A 63 264 130 HOH HOH . 
Q 6 HOH A 64 265 134 HOH HOH . 
Q 6 HOH A 65 266 135 HOH HOH . 
Q 6 HOH A 66 267 137 HOH HOH . 
Q 6 HOH A 67 268 141 HOH HOH . 
Q 6 HOH A 68 269 142 HOH HOH . 
Q 6 HOH A 69 270 146 HOH HOH . 
Q 6 HOH A 70 271 148 HOH HOH . 
R 6 HOH B 1 2 2 HOH HOH . 
R 6 HOH B 2 4 4 HOH HOH . 
R 6 HOH B 3 5 5 HOH HOH . 
R 6 HOH B 4 7 7 HOH HOH . 
R 6 HOH B 5 10 10 HOH HOH . 
R 6 HOH B 6 15 15 HOH HOH . 
R 6 HOH B 7 16 16 HOH HOH . 
R 6 HOH B 8 18 18 HOH HOH . 
R 6 HOH B 9 19 19 HOH HOH . 
R 6 HOH B 10 21 21 HOH HOH . 
R 6 HOH B 11 22 22 HOH HOH . 
R 6 HOH B 12 26 26 HOH HOH . 
R 6 HOH B 13 27 27 HOH HOH . 
R 6 HOH B 14 29 29 HOH HOH . 
R 6 HOH B 15 214 8 HOH HOH . 
R 6 HOH B 16 215 31 HOH HOH . 
R 6 HOH B 17 216 33 HOH HOH . 
R 6 HOH B 18 217 36 HOH HOH . 
R 6 HOH B 19 218 38 HOH HOH . 
R 6 HOH B 20 219 39 HOH HOH . 
R 6 HOH B 21 220 41 HOH HOH . 
R 6 HOH B 22 221 42 HOH HOH . 
R 6 HOH B 23 222 48 HOH HOH . 
R 6 HOH B 24 223 49 HOH HOH . 
R 6 HOH B 25 224 54 HOH HOH . 
R 6 HOH B 26 225 57 HOH HOH . 
R 6 HOH B 27 226 58 HOH HOH . 
R 6 HOH B 28 227 59 HOH HOH . 
R 6 HOH B 29 228 61 HOH HOH . 
R 6 HOH B 30 229 62 HOH HOH . 
R 6 HOH B 31 230 64 HOH HOH . 
R 6 HOH B 32 231 66 HOH HOH . 
R 6 HOH B 33 232 68 HOH HOH . 
R 6 HOH B 34 233 74 HOH HOH . 
R 6 HOH B 35 234 75 HOH HOH . 
R 6 HOH B 36 235 76 HOH HOH . 
R 6 HOH B 37 236 77 HOH HOH . 
R 6 HOH B 38 237 79 HOH HOH . 
R 6 HOH B 39 238 81 HOH HOH . 
R 6 HOH B 40 239 83 HOH HOH . 
R 6 HOH B 41 240 84 HOH HOH . 
R 6 HOH B 42 241 85 HOH HOH . 
R 6 HOH B 43 242 86 HOH HOH . 
R 6 HOH B 44 243 87 HOH HOH . 
R 6 HOH B 45 244 88 HOH HOH . 
R 6 HOH B 46 245 89 HOH HOH . 
R 6 HOH B 47 246 94 HOH HOH . 
R 6 HOH B 48 247 95 HOH HOH . 
R 6 HOH B 49 248 96 HOH HOH . 
R 6 HOH B 50 249 97 HOH HOH . 
R 6 HOH B 51 250 98 HOH HOH . 
R 6 HOH B 52 251 99 HOH HOH . 
R 6 HOH B 53 252 100 HOH HOH . 
R 6 HOH B 54 253 101 HOH HOH . 
R 6 HOH B 55 254 103 HOH HOH . 
R 6 HOH B 56 255 104 HOH HOH . 
R 6 HOH B 57 256 105 HOH HOH . 
R 6 HOH B 58 257 109 HOH HOH . 
R 6 HOH B 59 258 110 HOH HOH . 
R 6 HOH B 60 259 111 HOH HOH . 
R 6 HOH B 61 260 113 HOH HOH . 
R 6 HOH B 62 261 118 HOH HOH . 
R 6 HOH B 63 262 119 HOH HOH . 
R 6 HOH B 64 263 120 HOH HOH . 
R 6 HOH B 65 264 121 HOH HOH . 
R 6 HOH B 66 265 122 HOH HOH . 
R 6 HOH B 67 266 131 HOH HOH . 
R 6 HOH B 68 267 132 HOH HOH . 
R 6 HOH B 69 268 133 HOH HOH . 
R 6 HOH B 70 269 136 HOH HOH . 
R 6 HOH B 71 270 138 HOH HOH . 
R 6 HOH B 72 271 139 HOH HOH . 
R 6 HOH B 73 272 140 HOH HOH . 
R 6 HOH B 74 273 143 HOH HOH . 
R 6 HOH B 75 274 147 HOH HOH . 
R 6 HOH B 76 275 149 HOH HOH . 
S 6 HOH F 1 145 145 HOH HOH . 
T 6 HOH E 1 107 107 HOH HOH . 
T 6 HOH E 2 144 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACY . . . J 5 17.49 0.135 0.944 1 54.3 ? C ACY 1 A 1 
HETATM 2 O O ACY . . . J 5 18.437 -0.596 1.378 1 47.66 ? O ACY 1 A 1 
HETATM 3 O OXT ACY . . . J 5 17.54 1.313 0.523 1 43.33 ? OXT ACY 1 A 1 
HETATM 4 C CH3 ACY . . . J 5 16.147 -0.467 0.852 1 58.77 ? CH3 ACY 1 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#