data_3AVL # _model_server_result.job_id H4UjJWCgCzSi4JGnzBZroQ _model_server_result.datetime_utc '2024-11-23 08:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3avl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":7}' # _entry.id 3AVL # _exptl.entry_id 3AVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AVL _cell.length_a 70.484 _cell.length_b 70.484 _cell.length_c 66.865 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C N ALA 1 F ALA 1 1_555 C C ASP 8 F ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 D N ALA 1 E ALA 1 1_555 D C ASP 8 E ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 297 n n S O2 SO4 doub 298 n n S O3 SO4 sing 299 n n S O4 SO4 sing 300 n n # _atom_sites.entry_id 3AVL _atom_sites.fract_transf_matrix[1][1] 0.014188 _atom_sites.fract_transf_matrix[1][2] 0.008191 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 2 2 SO4 SO4 . F 3 SO4 A 1 4 4 SO4 SO4 . G 3 SO4 A 1 5 5 SO4 SO4 . H 3 SO4 A 1 7 7 SO4 SO4 . I 4 CL A 1 213 2 CL CL . J 5 ACY A 1 1 1 ACY ACY . K 5 ACY A 1 214 2 ACY ACY . L 3 SO4 B 1 1 1 SO4 SO4 . M 3 SO4 B 1 3 3 SO4 SO4 . N 3 SO4 B 1 6 6 SO4 SO4 . O 3 SO4 B 1 8 8 SO4 SO4 . P 4 CL B 1 213 1 CL CL . Q 6 HOH A 1 3 3 HOH HOH . Q 6 HOH A 2 6 6 HOH HOH . Q 6 HOH A 3 9 9 HOH HOH . Q 6 HOH A 4 11 11 HOH HOH . Q 6 HOH A 5 12 12 HOH HOH . Q 6 HOH A 6 13 13 HOH HOH . Q 6 HOH A 7 14 14 HOH HOH . Q 6 HOH A 8 17 17 HOH HOH . Q 6 HOH A 9 20 20 HOH HOH . Q 6 HOH A 10 23 23 HOH HOH . Q 6 HOH A 11 24 24 HOH HOH . Q 6 HOH A 12 25 25 HOH HOH . Q 6 HOH A 13 28 28 HOH HOH . Q 6 HOH A 14 215 1 HOH HOH . Q 6 HOH A 15 216 30 HOH HOH . Q 6 HOH A 16 217 32 HOH HOH . Q 6 HOH A 17 218 34 HOH HOH . Q 6 HOH A 18 219 35 HOH HOH . Q 6 HOH A 19 220 37 HOH HOH . Q 6 HOH A 20 221 40 HOH HOH . Q 6 HOH A 21 222 43 HOH HOH . Q 6 HOH A 22 223 44 HOH HOH . Q 6 HOH A 23 224 45 HOH HOH . Q 6 HOH A 24 225 46 HOH HOH . Q 6 HOH A 25 226 47 HOH HOH . Q 6 HOH A 26 227 50 HOH HOH . Q 6 HOH A 27 228 51 HOH HOH . Q 6 HOH A 28 229 52 HOH HOH . Q 6 HOH A 29 230 53 HOH HOH . Q 6 HOH A 30 231 55 HOH HOH . Q 6 HOH A 31 232 56 HOH HOH . Q 6 HOH A 32 233 60 HOH HOH . Q 6 HOH A 33 234 63 HOH HOH . Q 6 HOH A 34 235 65 HOH HOH . Q 6 HOH A 35 236 67 HOH HOH . Q 6 HOH A 36 237 69 HOH HOH . Q 6 HOH A 37 238 70 HOH HOH . Q 6 HOH A 38 239 71 HOH HOH . Q 6 HOH A 39 240 72 HOH HOH . Q 6 HOH A 40 241 73 HOH HOH . Q 6 HOH A 41 242 78 HOH HOH . Q 6 HOH A 42 243 80 HOH HOH . Q 6 HOH A 43 244 82 HOH HOH . Q 6 HOH A 44 245 90 HOH HOH . Q 6 HOH A 45 246 91 HOH HOH . Q 6 HOH A 46 247 92 HOH HOH . Q 6 HOH A 47 248 93 HOH HOH . Q 6 HOH A 48 249 102 HOH HOH . Q 6 HOH A 49 250 106 HOH HOH . Q 6 HOH A 50 251 108 HOH HOH . Q 6 HOH A 51 252 112 HOH HOH . Q 6 HOH A 52 253 114 HOH HOH . Q 6 HOH A 53 254 115 HOH HOH . Q 6 HOH A 54 255 116 HOH HOH . Q 6 HOH A 55 256 117 HOH HOH . Q 6 HOH A 56 257 123 HOH HOH . Q 6 HOH A 57 258 124 HOH HOH . Q 6 HOH A 58 259 125 HOH HOH . Q 6 HOH A 59 260 126 HOH HOH . Q 6 HOH A 60 261 127 HOH HOH . Q 6 HOH A 61 262 128 HOH HOH . Q 6 HOH A 62 263 129 HOH HOH . Q 6 HOH A 63 264 130 HOH HOH . Q 6 HOH A 64 265 134 HOH HOH . Q 6 HOH A 65 266 135 HOH HOH . Q 6 HOH A 66 267 137 HOH HOH . Q 6 HOH A 67 268 141 HOH HOH . Q 6 HOH A 68 269 142 HOH HOH . Q 6 HOH A 69 270 146 HOH HOH . Q 6 HOH A 70 271 148 HOH HOH . R 6 HOH B 1 2 2 HOH HOH . R 6 HOH B 2 4 4 HOH HOH . R 6 HOH B 3 5 5 HOH HOH . R 6 HOH B 4 7 7 HOH HOH . R 6 HOH B 5 10 10 HOH HOH . R 6 HOH B 6 15 15 HOH HOH . R 6 HOH B 7 16 16 HOH HOH . R 6 HOH B 8 18 18 HOH HOH . R 6 HOH B 9 19 19 HOH HOH . R 6 HOH B 10 21 21 HOH HOH . R 6 HOH B 11 22 22 HOH HOH . R 6 HOH B 12 26 26 HOH HOH . R 6 HOH B 13 27 27 HOH HOH . R 6 HOH B 14 29 29 HOH HOH . R 6 HOH B 15 214 8 HOH HOH . R 6 HOH B 16 215 31 HOH HOH . R 6 HOH B 17 216 33 HOH HOH . R 6 HOH B 18 217 36 HOH HOH . R 6 HOH B 19 218 38 HOH HOH . R 6 HOH B 20 219 39 HOH HOH . R 6 HOH B 21 220 41 HOH HOH . R 6 HOH B 22 221 42 HOH HOH . R 6 HOH B 23 222 48 HOH HOH . R 6 HOH B 24 223 49 HOH HOH . R 6 HOH B 25 224 54 HOH HOH . R 6 HOH B 26 225 57 HOH HOH . R 6 HOH B 27 226 58 HOH HOH . R 6 HOH B 28 227 59 HOH HOH . R 6 HOH B 29 228 61 HOH HOH . R 6 HOH B 30 229 62 HOH HOH . R 6 HOH B 31 230 64 HOH HOH . R 6 HOH B 32 231 66 HOH HOH . R 6 HOH B 33 232 68 HOH HOH . R 6 HOH B 34 233 74 HOH HOH . R 6 HOH B 35 234 75 HOH HOH . R 6 HOH B 36 235 76 HOH HOH . R 6 HOH B 37 236 77 HOH HOH . R 6 HOH B 38 237 79 HOH HOH . R 6 HOH B 39 238 81 HOH HOH . R 6 HOH B 40 239 83 HOH HOH . R 6 HOH B 41 240 84 HOH HOH . R 6 HOH B 42 241 85 HOH HOH . R 6 HOH B 43 242 86 HOH HOH . R 6 HOH B 44 243 87 HOH HOH . R 6 HOH B 45 244 88 HOH HOH . R 6 HOH B 46 245 89 HOH HOH . R 6 HOH B 47 246 94 HOH HOH . R 6 HOH B 48 247 95 HOH HOH . R 6 HOH B 49 248 96 HOH HOH . R 6 HOH B 50 249 97 HOH HOH . R 6 HOH B 51 250 98 HOH HOH . R 6 HOH B 52 251 99 HOH HOH . R 6 HOH B 53 252 100 HOH HOH . R 6 HOH B 54 253 101 HOH HOH . R 6 HOH B 55 254 103 HOH HOH . R 6 HOH B 56 255 104 HOH HOH . R 6 HOH B 57 256 105 HOH HOH . R 6 HOH B 58 257 109 HOH HOH . R 6 HOH B 59 258 110 HOH HOH . R 6 HOH B 60 259 111 HOH HOH . R 6 HOH B 61 260 113 HOH HOH . R 6 HOH B 62 261 118 HOH HOH . R 6 HOH B 63 262 119 HOH HOH . R 6 HOH B 64 263 120 HOH HOH . R 6 HOH B 65 264 121 HOH HOH . R 6 HOH B 66 265 122 HOH HOH . R 6 HOH B 67 266 131 HOH HOH . R 6 HOH B 68 267 132 HOH HOH . R 6 HOH B 69 268 133 HOH HOH . R 6 HOH B 70 269 136 HOH HOH . R 6 HOH B 71 270 138 HOH HOH . R 6 HOH B 72 271 139 HOH HOH . R 6 HOH B 73 272 140 HOH HOH . R 6 HOH B 74 273 143 HOH HOH . R 6 HOH B 75 274 147 HOH HOH . R 6 HOH B 76 275 149 HOH HOH . S 6 HOH F 1 145 145 HOH HOH . T 6 HOH E 1 107 107 HOH HOH . T 6 HOH E 2 144 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 3 18.397 -12.387 -3.511 0.7 51.5 ? S SO4 7 A 1 HETATM 2 O O1 SO4 . . . H 3 19.383 -13.448 -3.523 0.7 34.93 ? O1 SO4 7 A 1 HETATM 3 O O2 SO4 . . . H 3 18.682 -11.367 -4.555 0.7 50.53 ? O2 SO4 7 A 1 HETATM 4 O O3 SO4 . . . H 3 17.061 -12.957 -3.751 0.7 57.7 ? O3 SO4 7 A 1 HETATM 5 O O4 SO4 . . . H 3 18.523 -11.86 -2.14 0.7 41.05 ? O4 SO4 7 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #