data_3AWO # _model_server_result.job_id zw37_Sp5RX6xu5m4c1_nEA _model_server_result.datetime_utc '2024-10-12 20:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3awo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3AWO # _exptl.entry_id 3AWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AWO _cell.length_a 105.053 _cell.length_b 105.053 _cell.length_c 81.916 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 105.053 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C4A _struct_conn.ptnr1_label_comp_id PLP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PLP _struct_conn.ptnr1_auth_seq_id 401 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id DSN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DSN _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.468 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 273 n y N1 C6 PLP sing 274 n y C2 C2A PLP sing 275 n n C2 C3 PLP sing 276 n y C2A H2A1 PLP sing 277 n n C2A H2A2 PLP sing 278 n n C2A H2A3 PLP sing 279 n n C3 O3 PLP sing 280 n n C3 C4 PLP doub 281 n y O3 HO3 PLP sing 282 n n C4 C4A PLP sing 283 n n C4 C5 PLP sing 284 n y C4A O4A PLP doub 285 n n C4A H4A PLP sing 286 n n C5 C6 PLP doub 287 n y C5 C5A PLP sing 288 n n C6 H6 PLP sing 289 n n C5A O4P PLP sing 290 n n C5A H5A1 PLP sing 291 n n C5A H5A2 PLP sing 292 n n O4P P PLP sing 293 n n P O1P PLP doub 294 n n P O2P PLP sing 295 n n P O3P PLP sing 296 n n O2P HOP2 PLP sing 297 n n O3P HOP3 PLP sing 298 n n # _atom_sites.entry_id 3AWO _atom_sites.fract_transf_matrix[1][1] 0.009519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 401 401 PLP PLP . C 3 DSN A 1 402 402 DSN DSN . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 504 504 HOH HOH . D 4 HOH A 3 505 505 HOH HOH . D 4 HOH A 4 506 506 HOH HOH . D 4 HOH A 5 508 508 HOH HOH . D 4 HOH A 6 509 509 HOH HOH . D 4 HOH A 7 511 511 HOH HOH . D 4 HOH A 8 512 512 HOH HOH . D 4 HOH A 9 514 514 HOH HOH . D 4 HOH A 10 519 519 HOH HOH . D 4 HOH A 11 520 520 HOH HOH . D 4 HOH A 12 525 525 HOH HOH . D 4 HOH A 13 526 526 HOH HOH . D 4 HOH A 14 532 532 HOH HOH . D 4 HOH A 15 545 545 HOH HOH . D 4 HOH A 16 551 551 HOH HOH . D 4 HOH A 17 557 557 HOH HOH . D 4 HOH A 18 565 565 HOH HOH . D 4 HOH A 19 569 569 HOH HOH . D 4 HOH A 20 571 571 HOH HOH . D 4 HOH A 21 573 573 HOH HOH . D 4 HOH A 22 577 577 HOH HOH . D 4 HOH A 23 581 581 HOH HOH . D 4 HOH A 24 594 594 HOH HOH . D 4 HOH A 25 632 632 HOH HOH . D 4 HOH A 26 636 636 HOH HOH . D 4 HOH A 27 642 642 HOH HOH . D 4 HOH A 28 644 644 HOH HOH . D 4 HOH A 29 649 649 HOH HOH . D 4 HOH A 30 650 650 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . A . B 2 -5.692 72.035 18.29 0.5 8.74 ? N1 PLP 401 A 1 HETATM 2 N N1 PLP . B . B 2 -5.543 71.709 18.792 0.5 21.22 ? N1 PLP 401 A 1 HETATM 3 C C2 PLP . A . B 2 -6.195 70.753 18.301 0.5 8.16 ? C2 PLP 401 A 1 HETATM 4 C C2 PLP . B . B 2 -6.191 70.732 18.154 0.5 21.05 ? C2 PLP 401 A 1 HETATM 5 C C2A PLP . A . B 2 -7.678 70.555 18.291 0.5 7.55 ? C2A PLP 401 A 1 HETATM 6 C C2A PLP . B . B 2 -7.718 70.709 18.17 0.5 20.5 ? C2A PLP 401 A 1 HETATM 7 C C3 PLP . A . B 2 -5.323 69.661 18.314 0.5 9.09 ? C3 PLP 401 A 1 HETATM 8 C C3 PLP . B . B 2 -5.477 69.729 17.5 0.5 21.83 ? C3 PLP 401 A 1 HETATM 9 O O3 PLP . A . B 2 -5.808 68.375 18.319 0.5 8.38 ? O3 PLP 401 A 1 HETATM 10 O O3 PLP . B . B 2 -6.149 68.715 16.87 0.5 22.3 ? O3 PLP 401 A 1 HETATM 11 C C4 PLP . A . B 2 -3.947 69.892 18.316 0.5 9.42 ? C4 PLP 401 A 1 HETATM 12 C C4 PLP . B . B 2 -4.082 69.753 17.48 0.5 21.42 ? C4 PLP 401 A 1 HETATM 13 C C4A PLP . A . B 2 -2.971 68.768 18.329 0.5 9.66 ? C4A PLP 401 A 1 HETATM 14 C C4A PLP . B . B 2 -3.293 68.691 16.717 0.5 21.37 ? C4A PLP 401 A 1 HETATM 15 C C5 PLP . A . B 2 -3.437 71.183 18.308 0.5 9.28 ? C5 PLP 401 A 1 HETATM 16 C C5 PLP . B . B 2 -3.444 70.804 18.138 0.5 21.18 ? C5 PLP 401 A 1 HETATM 17 C C6 PLP . A . B 2 -4.323 72.256 18.301 0.5 9.4 ? C6 PLP 401 A 1 HETATM 18 C C6 PLP . B . B 2 -4.22 71.769 18.777 0.5 21.26 ? C6 PLP 401 A 1 HETATM 19 C C5A PLP . A . B 2 -1.933 71.388 18.315 0.5 8.4 ? C5A PLP 401 A 1 HETATM 20 C C5A PLP . B . B 2 -1.92 70.948 18.23 0.5 19.96 ? C5A PLP 401 A 1 HETATM 21 O O4P PLP . A . B 2 -1.402 71.242 17.013 0.5 8.25 ? O4P PLP 401 A 1 HETATM 22 O O4P PLP . B . B 2 -1.334 71.195 16.954 0.5 19.54 ? O4P PLP 401 A 1 HETATM 23 P P PLP . A . B 2 -0.012 70.457 16.735 0.5 8.1 ? P PLP 401 A 1 HETATM 24 P P PLP . B . B 2 0.052 70.465 16.563 0.5 18.92 ? P PLP 401 A 1 HETATM 25 O O1P PLP . A . B 2 1.115 71.191 17.425 0.5 7.89 ? O1P PLP 401 A 1 HETATM 26 O O1P PLP . B . B 2 1.192 70.797 17.458 0.5 18.96 ? O1P PLP 401 A 1 HETATM 27 O O2P PLP . A . B 2 0.242 70.438 15.256 0.5 7.36 ? O2P PLP 401 A 1 HETATM 28 O O2P PLP . B . B 2 0.343 70.878 15.04 0.5 18.88 ? O2P PLP 401 A 1 HETATM 29 O O3P PLP . A . B 2 -0.082 69.057 17.288 0.5 7.53 ? O3P PLP 401 A 1 HETATM 30 O O3P PLP . B . B 2 -0.239 68.889 16.544 0.5 18.98 ? O3P PLP 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #