data_3AWO # _model_server_result.job_id 1xCakalZ1ms4aKN5Pu-qsw _model_server_result.datetime_utc '2024-10-12 20:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3awo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3AWO # _exptl.entry_id 3AWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-SERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AWO _cell.length_a 105.053 _cell.length_b 105.053 _cell.length_c 81.916 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 105.053 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C4A _struct_conn.ptnr1_label_comp_id PLP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PLP _struct_conn.ptnr1_auth_seq_id 401 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id DSN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DSN _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.468 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id DSN _chem_comp.mon_nstd_flag . _chem_comp.name D-SERINE _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DSN sing 83 n n N H DSN sing 84 n n N H2 DSN sing 85 n n CA C DSN sing 86 n n CA CB DSN sing 87 n n CA HA DSN sing 88 n n C O DSN doub 89 n n C OXT DSN sing 90 n n OXT HXT DSN sing 91 n n CB OG DSN sing 92 n n CB HB2 DSN sing 93 n n CB HB3 DSN sing 94 n n OG HG DSN sing 95 n n # _atom_sites.entry_id 3AWO _atom_sites.fract_transf_matrix[1][1] 0.009519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 401 401 PLP PLP . C 3 DSN A 1 402 402 DSN DSN . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 504 504 HOH HOH . D 4 HOH A 3 505 505 HOH HOH . D 4 HOH A 4 506 506 HOH HOH . D 4 HOH A 5 508 508 HOH HOH . D 4 HOH A 6 509 509 HOH HOH . D 4 HOH A 7 511 511 HOH HOH . D 4 HOH A 8 512 512 HOH HOH . D 4 HOH A 9 514 514 HOH HOH . D 4 HOH A 10 519 519 HOH HOH . D 4 HOH A 11 520 520 HOH HOH . D 4 HOH A 12 525 525 HOH HOH . D 4 HOH A 13 526 526 HOH HOH . D 4 HOH A 14 532 532 HOH HOH . D 4 HOH A 15 545 545 HOH HOH . D 4 HOH A 16 551 551 HOH HOH . D 4 HOH A 17 557 557 HOH HOH . D 4 HOH A 18 565 565 HOH HOH . D 4 HOH A 19 569 569 HOH HOH . D 4 HOH A 20 571 571 HOH HOH . D 4 HOH A 21 573 573 HOH HOH . D 4 HOH A 22 577 577 HOH HOH . D 4 HOH A 23 581 581 HOH HOH . D 4 HOH A 24 594 594 HOH HOH . D 4 HOH A 25 632 632 HOH HOH . D 4 HOH A 26 636 636 HOH HOH . D 4 HOH A 27 642 642 HOH HOH . D 4 HOH A 28 644 644 HOH HOH . D 4 HOH A 29 649 649 HOH HOH . D 4 HOH A 30 650 650 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DSN . . . C 3 -4.269 67.788 16.096 0.5 21.35 ? N DSN 402 A 1 HETATM 2 C CA DSN . . . C 3 -3.61 66.676 15.406 0.5 21.12 ? CA DSN 402 A 1 HETATM 3 C C DSN . . . C 3 -4.397 65.42 15.774 0.5 20.89 ? C DSN 402 A 1 HETATM 4 O O DSN . . . C 3 -3.816 64.319 15.649 0.5 20.64 ? O DSN 402 A 1 HETATM 5 O OXT DSN . . . C 3 -5.566 65.608 16.185 0.5 20.71 ? OXT DSN 402 A 1 HETATM 6 C CB DSN . . . C 3 -3.643 66.908 13.9 0.5 20.89 ? CB DSN 402 A 1 HETATM 7 O OG DSN . . . C 3 -2.379 66.514 13.365 0.5 21.48 ? OG DSN 402 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 7 #