data_3AXB # _model_server_result.job_id mBudKdAnEm9Cx15yLn0eSQ _model_server_result.datetime_utc '2024-11-22 00:43:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3axb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3004}' # _entry.id 3AXB # _exptl.entry_id 3AXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AXB _cell.length_a 60.182 _cell.length_b 60.182 _cell.length_c 274.096 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_646 y+1,x-1,-z+1 0 1 0 1 0 0 0 0 -1 60.182 -60.182 274.096 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 21 A MSE 1 1_555 A N PRO 22 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C SER 67 A SER 47 1_555 A N MSE 68 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C MSE 68 A MSE 48 1_555 A N ALA 69 A ALA 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C THR 78 A THR 58 1_555 A N MSE 79 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 79 A MSE 59 1_555 A N ASN 80 A ASN 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C GLY 147 A GLY 127 1_555 A N MSE 148 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C MSE 148 A MSE 128 1_555 A N ASN 149 A ASN 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C ARG 272 A ARG 252 1_555 A N MSE 273 A MSE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C MSE 273 A MSE 253 1_555 A N VAL 274 A VAL 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C ILE 287 A ILE 267 1_555 A N MSE 288 A MSE 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 A C MSE 288 A MSE 268 1_555 A N ARG 289 A ARG 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C ILE 401 A ILE 381 1_555 A N MSE 402 A MSE 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale13 A C MSE 402 A MSE 382 1_555 A N LYS 403 A LYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C GLY 417 A GLY 397 1_555 A N MSE 418 A MSE 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale15 A C MSE 418 A MSE 398 1_555 A N GLU 419 A GLU 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale16 A C GLU 428 A GLU 408 1_555 A N MSE 429 A MSE 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C MSE 429 A MSE 409 1_555 A N PRO 430 A PRO 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale18 A C TRP 433 A TRP 413 1_555 A N MSE 434 A MSE 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 A C MSE 434 A MSE 414 1_555 A N GLY 435 A GLY 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3AXB _atom_sites.fract_transf_matrix[1][1] 0.016616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRO A 1 2001 2001 PRO PR1 . C 3 FAD A 1 1001 1001 FAD FAD . D 4 EDO A 1 3001 3001 EDO EDO . E 4 EDO A 1 3002 3002 EDO EDO . F 4 EDO A 1 3003 3003 EDO EDO . G 4 EDO A 1 3004 3004 EDO EDO . H 4 EDO A 1 3005 3005 EDO EDO . I 4 EDO A 1 3006 3006 EDO EDO . J 5 HOH A 1 4001 4001 HOH HOH . J 5 HOH A 2 4002 4002 HOH HOH . J 5 HOH A 3 4003 4003 HOH HOH . J 5 HOH A 4 4004 4004 HOH HOH . J 5 HOH A 5 4005 4005 HOH HOH . J 5 HOH A 6 4006 4006 HOH HOH . J 5 HOH A 7 4007 4007 HOH HOH . J 5 HOH A 8 4008 4008 HOH HOH . J 5 HOH A 9 4009 4009 HOH HOH . J 5 HOH A 10 4010 4010 HOH HOH . J 5 HOH A 11 4011 4011 HOH HOH . J 5 HOH A 12 4012 4012 HOH HOH . J 5 HOH A 13 4013 4013 HOH HOH . J 5 HOH A 14 4014 4014 HOH HOH . J 5 HOH A 15 4015 4015 HOH HOH . J 5 HOH A 16 4016 4016 HOH HOH . J 5 HOH A 17 4017 4017 HOH HOH . J 5 HOH A 18 4018 4018 HOH HOH . J 5 HOH A 19 4019 4019 HOH HOH . J 5 HOH A 20 4020 4020 HOH HOH . J 5 HOH A 21 4021 4021 HOH HOH . J 5 HOH A 22 4022 4022 HOH HOH . J 5 HOH A 23 4023 4023 HOH HOH . J 5 HOH A 24 4024 4024 HOH HOH . J 5 HOH A 25 4025 4025 HOH HOH . J 5 HOH A 26 4026 4026 HOH HOH . J 5 HOH A 27 4027 4027 HOH HOH . J 5 HOH A 28 4028 4028 HOH HOH . J 5 HOH A 29 4029 4029 HOH HOH . J 5 HOH A 30 4030 4030 HOH HOH . J 5 HOH A 31 4031 4031 HOH HOH . J 5 HOH A 32 4032 4032 HOH HOH . J 5 HOH A 33 4033 4033 HOH HOH . J 5 HOH A 34 4034 4034 HOH HOH . J 5 HOH A 35 4035 4035 HOH HOH . J 5 HOH A 36 4036 4036 HOH HOH . J 5 HOH A 37 4037 4037 HOH HOH . J 5 HOH A 38 4038 4038 HOH HOH . J 5 HOH A 39 4039 4039 HOH HOH . J 5 HOH A 40 4040 4040 HOH HOH . J 5 HOH A 41 4041 4041 HOH HOH . J 5 HOH A 42 4042 4042 HOH HOH . J 5 HOH A 43 4043 4043 HOH HOH . J 5 HOH A 44 4044 4044 HOH HOH . J 5 HOH A 45 4045 4045 HOH HOH . J 5 HOH A 46 4046 4046 HOH HOH . J 5 HOH A 47 4047 4047 HOH HOH . J 5 HOH A 48 4048 4048 HOH HOH . J 5 HOH A 49 4049 4049 HOH HOH . J 5 HOH A 50 4050 4050 HOH HOH . J 5 HOH A 51 4051 4051 HOH HOH . J 5 HOH A 52 4052 4052 HOH HOH . J 5 HOH A 53 4053 4053 HOH HOH . J 5 HOH A 54 4054 4054 HOH HOH . J 5 HOH A 55 4055 4055 HOH HOH . J 5 HOH A 56 4056 4056 HOH HOH . J 5 HOH A 57 4057 4057 HOH HOH . J 5 HOH A 58 4058 4058 HOH HOH . J 5 HOH A 59 4059 4059 HOH HOH . J 5 HOH A 60 4060 4060 HOH HOH . J 5 HOH A 61 4061 4061 HOH HOH . J 5 HOH A 62 4062 4062 HOH HOH . J 5 HOH A 63 4063 4063 HOH HOH . J 5 HOH A 64 4064 4064 HOH HOH . J 5 HOH A 65 4065 4065 HOH HOH . J 5 HOH A 66 4066 4066 HOH HOH . J 5 HOH A 67 4067 4067 HOH HOH . J 5 HOH A 68 4068 4068 HOH HOH . J 5 HOH A 69 4069 4069 HOH HOH . J 5 HOH A 70 4070 4070 HOH HOH . J 5 HOH A 71 4071 4071 HOH HOH . J 5 HOH A 72 4072 4072 HOH HOH . J 5 HOH A 73 4073 4073 HOH HOH . J 5 HOH A 74 4074 4074 HOH HOH . J 5 HOH A 75 4075 4075 HOH HOH . J 5 HOH A 76 4076 4076 HOH HOH . J 5 HOH A 77 4077 4077 HOH HOH . J 5 HOH A 78 4078 4078 HOH HOH . J 5 HOH A 79 4079 4079 HOH HOH . J 5 HOH A 80 4080 4080 HOH HOH . J 5 HOH A 81 4081 4081 HOH HOH . J 5 HOH A 82 4082 4082 HOH HOH . J 5 HOH A 83 4083 4083 HOH HOH . J 5 HOH A 84 4084 4084 HOH HOH . J 5 HOH A 85 4085 4085 HOH HOH . J 5 HOH A 86 4086 4086 HOH HOH . J 5 HOH A 87 4087 4087 HOH HOH . J 5 HOH A 88 4088 4088 HOH HOH . J 5 HOH A 89 4089 4089 HOH HOH . J 5 HOH A 90 4090 4090 HOH HOH . J 5 HOH A 91 4091 4091 HOH HOH . J 5 HOH A 92 4092 4092 HOH HOH . J 5 HOH A 93 4093 4093 HOH HOH . J 5 HOH A 94 4094 4094 HOH HOH . J 5 HOH A 95 4095 4095 HOH HOH . J 5 HOH A 96 4096 4096 HOH HOH . J 5 HOH A 97 4097 4097 HOH HOH . J 5 HOH A 98 4098 4098 HOH HOH . J 5 HOH A 99 4099 4099 HOH HOH . J 5 HOH A 100 4100 4100 HOH HOH . J 5 HOH A 101 4101 4101 HOH HOH . J 5 HOH A 102 4102 4102 HOH HOH . J 5 HOH A 103 4103 4103 HOH HOH . J 5 HOH A 104 4104 4104 HOH HOH . J 5 HOH A 105 4105 4105 HOH HOH . J 5 HOH A 106 4106 4106 HOH HOH . J 5 HOH A 107 4107 4107 HOH HOH . J 5 HOH A 108 4108 4108 HOH HOH . J 5 HOH A 109 4109 4109 HOH HOH . J 5 HOH A 110 4110 4110 HOH HOH . J 5 HOH A 111 4111 4111 HOH HOH . J 5 HOH A 112 4112 4112 HOH HOH . J 5 HOH A 113 4113 4113 HOH HOH . J 5 HOH A 114 4114 4114 HOH HOH . J 5 HOH A 115 4115 4115 HOH HOH . J 5 HOH A 116 4116 4116 HOH HOH . J 5 HOH A 117 4117 4117 HOH HOH . J 5 HOH A 118 4118 4118 HOH HOH . J 5 HOH A 119 4119 4119 HOH HOH . J 5 HOH A 120 4120 4120 HOH HOH . J 5 HOH A 121 4121 4121 HOH HOH . J 5 HOH A 122 4122 4122 HOH HOH . J 5 HOH A 123 4123 4123 HOH HOH . J 5 HOH A 124 4124 4124 HOH HOH . J 5 HOH A 125 4125 4125 HOH HOH . J 5 HOH A 126 4126 4126 HOH HOH . J 5 HOH A 127 4127 4127 HOH HOH . J 5 HOH A 128 4128 4128 HOH HOH . J 5 HOH A 129 4129 4129 HOH HOH . J 5 HOH A 130 4130 4130 HOH HOH . J 5 HOH A 131 4131 4131 HOH HOH . J 5 HOH A 132 4132 4132 HOH HOH . J 5 HOH A 133 4133 4133 HOH HOH . J 5 HOH A 134 4134 4134 HOH HOH . J 5 HOH A 135 4135 4135 HOH HOH . J 5 HOH A 136 4136 4136 HOH HOH . J 5 HOH A 137 4137 4137 HOH HOH . J 5 HOH A 138 4138 4138 HOH HOH . J 5 HOH A 139 4139 4139 HOH HOH . J 5 HOH A 140 4140 4140 HOH HOH . J 5 HOH A 141 4141 4141 HOH HOH . J 5 HOH A 142 4142 4142 HOH HOH . J 5 HOH A 143 4143 4143 HOH HOH . J 5 HOH A 144 4144 4144 HOH HOH . J 5 HOH A 145 4145 4145 HOH HOH . J 5 HOH A 146 4146 4146 HOH HOH . J 5 HOH A 147 4147 4147 HOH HOH . J 5 HOH A 148 4148 4148 HOH HOH . J 5 HOH A 149 4149 4149 HOH HOH . J 5 HOH A 150 4151 4151 HOH HOH . J 5 HOH A 151 4152 4152 HOH HOH . J 5 HOH A 152 4153 4153 HOH HOH . J 5 HOH A 153 4154 4154 HOH HOH . J 5 HOH A 154 4155 4155 HOH HOH . J 5 HOH A 155 4156 4156 HOH HOH . J 5 HOH A 156 4157 4157 HOH HOH . J 5 HOH A 157 4158 4158 HOH HOH . J 5 HOH A 158 4159 4159 HOH HOH . J 5 HOH A 159 4160 4160 HOH HOH . J 5 HOH A 160 4161 4161 HOH HOH . J 5 HOH A 161 4166 4166 HOH HOH . J 5 HOH A 162 4168 4168 HOH HOH . J 5 HOH A 163 4169 4169 HOH HOH . J 5 HOH A 164 4170 4170 HOH HOH . J 5 HOH A 165 4174 4174 HOH HOH . J 5 HOH A 166 4175 4175 HOH HOH . J 5 HOH A 167 4176 4176 HOH HOH . J 5 HOH A 168 4177 4177 HOH HOH . J 5 HOH A 169 4179 4179 HOH HOH . J 5 HOH A 170 4185 4185 HOH HOH . J 5 HOH A 171 4199 4199 HOH HOH . J 5 HOH A 172 4208 4208 HOH HOH . J 5 HOH A 173 4209 4209 HOH HOH . J 5 HOH A 174 4210 4210 HOH HOH . J 5 HOH A 175 4211 4211 HOH HOH . J 5 HOH A 176 4218 4218 HOH HOH . J 5 HOH A 177 4219 4219 HOH HOH . J 5 HOH A 178 4220 4220 HOH HOH . J 5 HOH A 179 4222 4222 HOH HOH . J 5 HOH A 180 4223 4223 HOH HOH . J 5 HOH A 181 4224 4224 HOH HOH . J 5 HOH A 182 4225 4225 HOH HOH . J 5 HOH A 183 4226 4226 HOH HOH . J 5 HOH A 184 4227 4227 HOH HOH . J 5 HOH A 185 4228 4228 HOH HOH . J 5 HOH A 186 4229 4229 HOH HOH . J 5 HOH A 187 4230 4230 HOH HOH . J 5 HOH A 188 4231 4231 HOH HOH . J 5 HOH A 189 4232 4232 HOH HOH . J 5 HOH A 190 4233 4233 HOH HOH . J 5 HOH A 191 4234 4234 HOH HOH . J 5 HOH A 192 4235 4235 HOH HOH . J 5 HOH A 193 4236 4236 HOH HOH . J 5 HOH A 194 4237 4237 HOH HOH . J 5 HOH A 195 4238 4238 HOH HOH . J 5 HOH A 196 4239 4239 HOH HOH . J 5 HOH A 197 4240 4240 HOH HOH . J 5 HOH A 198 4241 4241 HOH HOH . J 5 HOH A 199 4242 4242 HOH HOH . J 5 HOH A 200 4245 4245 HOH HOH . J 5 HOH A 201 4246 4246 HOH HOH . J 5 HOH A 202 4247 4247 HOH HOH . J 5 HOH A 203 4248 4248 HOH HOH . J 5 HOH A 204 4249 4249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 61.467 11.781 135.555 1 25.31 ? C1 EDO 3004 A 1 HETATM 2 O O1 EDO . . . G 4 60.284 10.937 135.735 1 21.45 ? O1 EDO 3004 A 1 HETATM 3 C C2 EDO . . . G 4 62.401 11.254 134.446 1 26.02 ? C2 EDO 3004 A 1 HETATM 4 O O2 EDO . . . G 4 61.699 11.107 133.185 1 22.06 ? O2 EDO 3004 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #