data_3AXZ # _model_server_result.job_id UcdHVDo2i4x0xWSuJI-y1Q _model_server_result.datetime_utc '2024-12-26 21:10:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3axz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3AXZ # _exptl.entry_id 3AXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AXZ _cell.length_a 94.97 _cell.length_b 94.97 _cell.length_c 177.89 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 3AXZ _atom_sites.fract_transf_matrix[1][1] 0.01053 _atom_sites.fract_transf_matrix[1][2] 0.006079 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN A 1 401 401 ADN ADN . C 3 HOH A 1 247 1 HOH HOH . C 3 HOH A 2 248 2 HOH HOH . C 3 HOH A 3 249 3 HOH HOH . C 3 HOH A 4 250 4 HOH HOH . C 3 HOH A 5 251 5 HOH HOH . C 3 HOH A 6 252 6 HOH HOH . C 3 HOH A 7 253 7 HOH HOH . C 3 HOH A 8 254 8 HOH HOH . C 3 HOH A 9 255 9 HOH HOH . C 3 HOH A 10 256 10 HOH HOH . C 3 HOH A 11 257 11 HOH HOH . C 3 HOH A 12 258 12 HOH HOH . C 3 HOH A 13 259 13 HOH HOH . C 3 HOH A 14 260 14 HOH HOH . C 3 HOH A 15 261 15 HOH HOH . C 3 HOH A 16 262 16 HOH HOH . C 3 HOH A 17 263 17 HOH HOH . C 3 HOH A 18 264 18 HOH HOH . C 3 HOH A 19 265 19 HOH HOH . C 3 HOH A 20 266 20 HOH HOH . C 3 HOH A 21 267 21 HOH HOH . C 3 HOH A 22 268 22 HOH HOH . C 3 HOH A 23 269 23 HOH HOH . C 3 HOH A 24 270 24 HOH HOH . C 3 HOH A 25 271 25 HOH HOH . C 3 HOH A 26 272 26 HOH HOH . C 3 HOH A 27 273 27 HOH HOH . C 3 HOH A 28 274 28 HOH HOH . C 3 HOH A 29 275 29 HOH HOH . C 3 HOH A 30 276 30 HOH HOH . C 3 HOH A 31 277 31 HOH HOH . C 3 HOH A 32 278 32 HOH HOH . C 3 HOH A 33 279 33 HOH HOH . C 3 HOH A 34 280 34 HOH HOH . C 3 HOH A 35 281 35 HOH HOH . C 3 HOH A 36 282 36 HOH HOH . C 3 HOH A 37 283 37 HOH HOH . C 3 HOH A 38 284 38 HOH HOH . C 3 HOH A 39 285 39 HOH HOH . C 3 HOH A 40 286 40 HOH HOH . C 3 HOH A 41 287 41 HOH HOH . C 3 HOH A 42 288 42 HOH HOH . C 3 HOH A 43 289 43 HOH HOH . C 3 HOH A 44 290 44 HOH HOH . C 3 HOH A 45 291 45 HOH HOH . C 3 HOH A 46 292 46 HOH HOH . C 3 HOH A 47 293 47 HOH HOH . C 3 HOH A 48 294 48 HOH HOH . C 3 HOH A 49 295 49 HOH HOH . C 3 HOH A 50 296 50 HOH HOH . C 3 HOH A 51 297 51 HOH HOH . C 3 HOH A 52 298 52 HOH HOH . C 3 HOH A 53 299 53 HOH HOH . C 3 HOH A 54 300 54 HOH HOH . C 3 HOH A 55 301 55 HOH HOH . C 3 HOH A 56 302 56 HOH HOH . C 3 HOH A 57 303 57 HOH HOH . C 3 HOH A 58 304 58 HOH HOH . C 3 HOH A 59 305 59 HOH HOH . C 3 HOH A 60 306 60 HOH HOH . C 3 HOH A 61 307 61 HOH HOH . C 3 HOH A 62 308 62 HOH HOH . C 3 HOH A 63 309 63 HOH HOH . C 3 HOH A 64 310 64 HOH HOH . C 3 HOH A 65 311 65 HOH HOH . C 3 HOH A 66 312 66 HOH HOH . C 3 HOH A 67 313 67 HOH HOH . C 3 HOH A 68 314 68 HOH HOH . C 3 HOH A 69 315 69 HOH HOH . C 3 HOH A 70 316 70 HOH HOH . C 3 HOH A 71 317 71 HOH HOH . C 3 HOH A 72 318 72 HOH HOH . C 3 HOH A 73 319 73 HOH HOH . C 3 HOH A 74 320 74 HOH HOH . C 3 HOH A 75 321 75 HOH HOH . C 3 HOH A 76 322 76 HOH HOH . C 3 HOH A 77 323 77 HOH HOH . C 3 HOH A 78 324 78 HOH HOH . C 3 HOH A 79 325 79 HOH HOH . C 3 HOH A 80 326 80 HOH HOH . C 3 HOH A 81 327 81 HOH HOH . C 3 HOH A 82 328 82 HOH HOH . C 3 HOH A 83 329 83 HOH HOH . C 3 HOH A 84 330 84 HOH HOH . C 3 HOH A 85 331 85 HOH HOH . C 3 HOH A 86 332 86 HOH HOH . C 3 HOH A 87 333 87 HOH HOH . C 3 HOH A 88 334 88 HOH HOH . C 3 HOH A 89 335 89 HOH HOH . C 3 HOH A 90 336 90 HOH HOH . C 3 HOH A 91 337 91 HOH HOH . C 3 HOH A 92 338 92 HOH HOH . C 3 HOH A 93 339 93 HOH HOH . C 3 HOH A 94 340 94 HOH HOH . C 3 HOH A 95 341 95 HOH HOH . C 3 HOH A 96 342 96 HOH HOH . C 3 HOH A 97 343 97 HOH HOH . C 3 HOH A 98 344 98 HOH HOH . C 3 HOH A 99 345 99 HOH HOH . C 3 HOH A 100 346 100 HOH HOH . C 3 HOH A 101 347 101 HOH HOH . C 3 HOH A 102 348 102 HOH HOH . C 3 HOH A 103 349 103 HOH HOH . C 3 HOH A 104 350 104 HOH HOH . C 3 HOH A 105 351 105 HOH HOH . C 3 HOH A 106 352 106 HOH HOH . C 3 HOH A 107 353 107 HOH HOH . C 3 HOH A 108 354 108 HOH HOH . C 3 HOH A 109 355 109 HOH HOH . C 3 HOH A 110 356 110 HOH HOH . C 3 HOH A 111 357 111 HOH HOH . C 3 HOH A 112 358 112 HOH HOH . C 3 HOH A 113 359 113 HOH HOH . C 3 HOH A 114 360 114 HOH HOH . C 3 HOH A 115 361 115 HOH HOH . C 3 HOH A 116 362 116 HOH HOH . C 3 HOH A 117 363 117 HOH HOH . C 3 HOH A 118 364 118 HOH HOH . C 3 HOH A 119 365 119 HOH HOH . C 3 HOH A 120 366 120 HOH HOH . C 3 HOH A 121 367 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . B 2 44.317 6.475 11.142 1 27.75 ? O5' ADN 401 A 1 HETATM 2 C C5' ADN . . . B 2 43.015 6.044 11.547 1 20.61 ? C5' ADN 401 A 1 HETATM 3 C C4' ADN . . . B 2 42.961 4.515 11.544 1 18.25 ? C4' ADN 401 A 1 HETATM 4 O O4' ADN . . . B 2 43.339 4.024 10.244 1 14.02 ? O4' ADN 401 A 1 HETATM 5 C C3' ADN . . . B 2 43.954 3.925 12.549 1 13.96 ? C3' ADN 401 A 1 HETATM 6 O O3' ADN . . . B 2 43.507 2.662 13.049 1 13.8 ? O3' ADN 401 A 1 HETATM 7 C C2' ADN . . . B 2 45.189 3.747 11.67 1 17.39 ? C2' ADN 401 A 1 HETATM 8 O O2' ADN . . . B 2 46.109 2.799 12.217 1 15.96 ? O2' ADN 401 A 1 HETATM 9 C C1' ADN . . . B 2 44.548 3.255 10.373 1 12.7 ? C1' ADN 401 A 1 HETATM 10 N N9 ADN . . . B 2 45.473 3.453 9.234 1 14.18 ? N9 ADN 401 A 1 HETATM 11 C C8 ADN . . . B 2 45.852 4.628 8.735 1 15.09 ? C8 ADN 401 A 1 HETATM 12 N N7 ADN . . . B 2 46.722 4.433 7.745 1 16.53 ? N7 ADN 401 A 1 HETATM 13 C C5 ADN . . . B 2 46.899 3.122 7.61 1 16.19 ? C5 ADN 401 A 1 HETATM 14 C C6 ADN . . . B 2 47.672 2.33 6.77 1 17.41 ? C6 ADN 401 A 1 HETATM 15 N N6 ADN . . . B 2 48.464 2.88 5.854 1 21.4 ? N6 ADN 401 A 1 HETATM 16 N N1 ADN . . . B 2 47.614 0.998 6.901 1 20.03 ? N1 ADN 401 A 1 HETATM 17 C C2 ADN . . . B 2 46.836 0.436 7.811 1 14.48 ? C2 ADN 401 A 1 HETATM 18 N N3 ADN . . . B 2 46.09 1.158 8.627 1 11.95 ? N3 ADN 401 A 1 HETATM 19 C C4 ADN . . . B 2 46.098 2.496 8.555 1 14.59 ? C4 ADN 401 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #