data_3AYD # _model_server_result.job_id hMaAU3v6tMk5rIiBVGN_aw _model_server_result.datetime_utc '2025-03-01 07:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ayd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":4}' # _entry.id 3AYD # _exptl.entry_id 3AYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AYD _cell.length_a 50.73 _cell.length_b 50.73 _cell.length_c 106.78 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 A2G _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B A2G 1 B 1 A2G B 251 TFN 2 n B GAL 2 B 2 GAL B 251 TFN 2 n C A2G 1 C 1 A2G C 252 TFN 2 n C GAL 2 C 2 GAL C 252 TFN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D OH NPO . A NPO 251 1_555 B C1 A2G . B A2G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 E OH NPO . A NPO 254 1_555 C C1 A2G . C A2G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 B O3 A2G . B A2G 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 C O3 A2G . C A2G 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 359 n n S O2 SO4 doub 360 n n S O3 SO4 sing 361 n n S O4 SO4 sing 362 n n # _atom_sites.entry_id 3AYD _atom_sites.fract_transf_matrix[1][1] 0.019712 _atom_sites.fract_transf_matrix[1][2] 0.011381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NPO A 1 251 251 NPO TFN . E 3 NPO A 1 254 252 NPO TFN . F 4 SO4 A 1 1 1 SO4 SO4 . G 4 SO4 A 1 2 2 SO4 SO4 . H 4 SO4 A 1 3 3 SO4 SO4 . I 4 SO4 A 1 4 4 SO4 SO4 . J 5 HOH A 1 5 5 HOH HOH . J 5 HOH A 2 6 6 HOH HOH . J 5 HOH A 3 7 7 HOH HOH . J 5 HOH A 4 8 8 HOH HOH . J 5 HOH A 5 9 9 HOH HOH . J 5 HOH A 6 10 10 HOH HOH . J 5 HOH A 7 11 11 HOH HOH . J 5 HOH A 8 12 12 HOH HOH . J 5 HOH A 9 13 13 HOH HOH . J 5 HOH A 10 14 14 HOH HOH . J 5 HOH A 11 15 15 HOH HOH . J 5 HOH A 12 16 16 HOH HOH . J 5 HOH A 13 17 17 HOH HOH . J 5 HOH A 14 18 18 HOH HOH . J 5 HOH A 15 19 19 HOH HOH . J 5 HOH A 16 20 20 HOH HOH . J 5 HOH A 17 21 21 HOH HOH . J 5 HOH A 18 22 22 HOH HOH . J 5 HOH A 19 23 23 HOH HOH . J 5 HOH A 20 24 24 HOH HOH . J 5 HOH A 21 25 25 HOH HOH . J 5 HOH A 22 26 26 HOH HOH . J 5 HOH A 23 27 27 HOH HOH . J 5 HOH A 24 28 28 HOH HOH . J 5 HOH A 25 29 29 HOH HOH . J 5 HOH A 26 30 30 HOH HOH . J 5 HOH A 27 31 31 HOH HOH . J 5 HOH A 28 32 32 HOH HOH . J 5 HOH A 29 33 33 HOH HOH . J 5 HOH A 30 34 34 HOH HOH . J 5 HOH A 31 35 35 HOH HOH . J 5 HOH A 32 36 36 HOH HOH . J 5 HOH A 33 37 37 HOH HOH . J 5 HOH A 34 38 38 HOH HOH . J 5 HOH A 35 39 39 HOH HOH . J 5 HOH A 36 40 40 HOH HOH . J 5 HOH A 37 41 41 HOH HOH . J 5 HOH A 38 42 42 HOH HOH . J 5 HOH A 39 43 43 HOH HOH . J 5 HOH A 40 44 44 HOH HOH . J 5 HOH A 41 45 45 HOH HOH . J 5 HOH A 42 46 46 HOH HOH . J 5 HOH A 43 47 47 HOH HOH . J 5 HOH A 44 48 48 HOH HOH . J 5 HOH A 45 49 49 HOH HOH . J 5 HOH A 46 50 50 HOH HOH . J 5 HOH A 47 51 51 HOH HOH . J 5 HOH A 48 52 52 HOH HOH . J 5 HOH A 49 53 53 HOH HOH . J 5 HOH A 50 54 54 HOH HOH . J 5 HOH A 51 55 55 HOH HOH . J 5 HOH A 52 56 56 HOH HOH . J 5 HOH A 53 57 57 HOH HOH . J 5 HOH A 54 58 58 HOH HOH . J 5 HOH A 55 59 59 HOH HOH . J 5 HOH A 56 60 60 HOH HOH . J 5 HOH A 57 61 61 HOH HOH . J 5 HOH A 58 62 62 HOH HOH . J 5 HOH A 59 63 63 HOH HOH . J 5 HOH A 60 64 64 HOH HOH . J 5 HOH A 61 65 65 HOH HOH . J 5 HOH A 62 66 66 HOH HOH . J 5 HOH A 63 67 67 HOH HOH . J 5 HOH A 64 68 68 HOH HOH . J 5 HOH A 65 69 69 HOH HOH . J 5 HOH A 66 70 70 HOH HOH . J 5 HOH A 67 71 71 HOH HOH . J 5 HOH A 68 72 72 HOH HOH . J 5 HOH A 69 73 73 HOH HOH . J 5 HOH A 70 74 74 HOH HOH . J 5 HOH A 71 75 75 HOH HOH . J 5 HOH A 72 76 76 HOH HOH . J 5 HOH A 73 77 77 HOH HOH . J 5 HOH A 74 78 78 HOH HOH . J 5 HOH A 75 79 79 HOH HOH . J 5 HOH A 76 80 80 HOH HOH . J 5 HOH A 77 81 81 HOH HOH . J 5 HOH A 78 82 82 HOH HOH . J 5 HOH A 79 83 83 HOH HOH . J 5 HOH A 80 84 84 HOH HOH . J 5 HOH A 81 85 85 HOH HOH . J 5 HOH A 82 86 86 HOH HOH . J 5 HOH A 83 87 87 HOH HOH . J 5 HOH A 84 88 88 HOH HOH . J 5 HOH A 85 89 89 HOH HOH . J 5 HOH A 86 90 90 HOH HOH . J 5 HOH A 87 91 91 HOH HOH . J 5 HOH A 88 92 92 HOH HOH . J 5 HOH A 89 93 93 HOH HOH . J 5 HOH A 90 94 94 HOH HOH . J 5 HOH A 91 95 95 HOH HOH . J 5 HOH A 92 96 96 HOH HOH . J 5 HOH A 93 97 97 HOH HOH . J 5 HOH A 94 98 98 HOH HOH . J 5 HOH A 95 99 99 HOH HOH . J 5 HOH A 96 100 100 HOH HOH . J 5 HOH A 97 101 101 HOH HOH . J 5 HOH A 98 102 102 HOH HOH . J 5 HOH A 99 103 103 HOH HOH . J 5 HOH A 100 104 104 HOH HOH . J 5 HOH A 101 105 105 HOH HOH . J 5 HOH A 102 106 106 HOH HOH . J 5 HOH A 103 107 107 HOH HOH . J 5 HOH A 104 108 108 HOH HOH . J 5 HOH A 105 109 109 HOH HOH . J 5 HOH A 106 110 110 HOH HOH . J 5 HOH A 107 111 111 HOH HOH . J 5 HOH A 108 112 112 HOH HOH . J 5 HOH A 109 113 113 HOH HOH . J 5 HOH A 110 114 114 HOH HOH . J 5 HOH A 111 115 115 HOH HOH . J 5 HOH A 112 257 1 HOH HOH . J 5 HOH A 113 258 2 HOH HOH . J 5 HOH A 114 259 3 HOH HOH . J 5 HOH A 115 260 4 HOH HOH . J 5 HOH A 116 261 116 HOH HOH . J 5 HOH A 117 262 117 HOH HOH . J 5 HOH A 118 263 118 HOH HOH . J 5 HOH A 119 264 119 HOH HOH . J 5 HOH A 120 265 120 HOH HOH . J 5 HOH A 121 266 121 HOH HOH . J 5 HOH A 122 267 122 HOH HOH . J 5 HOH A 123 268 123 HOH HOH . J 5 HOH A 124 269 124 HOH HOH . J 5 HOH A 125 270 125 HOH HOH . J 5 HOH A 126 271 126 HOH HOH . J 5 HOH A 127 272 127 HOH HOH . J 5 HOH A 128 273 128 HOH HOH . J 5 HOH A 129 274 129 HOH HOH . J 5 HOH A 130 275 130 HOH HOH . J 5 HOH A 131 276 131 HOH HOH . J 5 HOH A 132 277 132 HOH HOH . J 5 HOH A 133 278 133 HOH HOH . J 5 HOH A 134 279 134 HOH HOH . J 5 HOH A 135 280 135 HOH HOH . J 5 HOH A 136 281 136 HOH HOH . J 5 HOH A 137 282 137 HOH HOH . J 5 HOH A 138 283 138 HOH HOH . J 5 HOH A 139 284 139 HOH HOH . J 5 HOH A 140 285 140 HOH HOH . J 5 HOH A 141 286 141 HOH HOH . J 5 HOH A 142 287 142 HOH HOH . J 5 HOH A 143 288 143 HOH HOH . J 5 HOH A 144 289 144 HOH HOH . J 5 HOH A 145 290 145 HOH HOH . J 5 HOH A 146 291 146 HOH HOH . J 5 HOH A 147 292 147 HOH HOH . J 5 HOH A 148 293 148 HOH HOH . J 5 HOH A 149 294 149 HOH HOH . J 5 HOH A 150 295 150 HOH HOH . J 5 HOH A 151 296 151 HOH HOH . J 5 HOH A 152 297 152 HOH HOH . J 5 HOH A 153 298 153 HOH HOH . J 5 HOH A 154 299 154 HOH HOH . J 5 HOH A 155 300 155 HOH HOH . J 5 HOH A 156 301 156 HOH HOH . J 5 HOH A 157 302 157 HOH HOH . J 5 HOH A 158 303 158 HOH HOH . J 5 HOH A 159 304 159 HOH HOH . J 5 HOH A 160 305 160 HOH HOH . J 5 HOH A 161 306 161 HOH HOH . J 5 HOH A 162 307 162 HOH HOH . J 5 HOH A 163 308 163 HOH HOH . J 5 HOH A 164 309 164 HOH HOH . J 5 HOH A 165 310 165 HOH HOH . J 5 HOH A 166 311 166 HOH HOH . J 5 HOH A 167 312 167 HOH HOH . J 5 HOH A 168 313 168 HOH HOH . J 5 HOH A 169 314 169 HOH HOH . J 5 HOH A 170 315 170 HOH HOH . J 5 HOH A 171 316 171 HOH HOH . J 5 HOH A 172 317 172 HOH HOH . J 5 HOH A 173 318 173 HOH HOH . J 5 HOH A 174 319 174 HOH HOH . J 5 HOH A 175 320 175 HOH HOH . J 5 HOH A 176 321 176 HOH HOH . J 5 HOH A 177 322 177 HOH HOH . J 5 HOH A 178 323 178 HOH HOH . J 5 HOH A 179 324 179 HOH HOH . J 5 HOH A 180 325 180 HOH HOH . J 5 HOH A 181 326 181 HOH HOH . J 5 HOH A 182 327 182 HOH HOH . J 5 HOH A 183 328 183 HOH HOH . J 5 HOH A 184 329 184 HOH HOH . J 5 HOH A 185 330 185 HOH HOH . J 5 HOH A 186 331 186 HOH HOH . J 5 HOH A 187 332 187 HOH HOH . J 5 HOH A 188 333 188 HOH HOH . J 5 HOH A 189 334 189 HOH HOH . J 5 HOH A 190 335 190 HOH HOH . J 5 HOH A 191 336 191 HOH HOH . J 5 HOH A 192 337 192 HOH HOH . J 5 HOH A 193 338 193 HOH HOH . J 5 HOH A 194 339 194 HOH HOH . J 5 HOH A 195 340 195 HOH HOH . J 5 HOH A 196 341 196 HOH HOH . J 5 HOH A 197 342 197 HOH HOH . J 5 HOH A 198 343 198 HOH HOH . J 5 HOH A 199 344 199 HOH HOH . J 5 HOH A 200 345 200 HOH HOH . J 5 HOH A 201 346 201 HOH HOH . J 5 HOH A 202 347 202 HOH HOH . J 5 HOH A 203 348 203 HOH HOH . J 5 HOH A 204 349 204 HOH HOH . J 5 HOH A 205 350 205 HOH HOH . J 5 HOH A 206 351 206 HOH HOH . J 5 HOH A 207 352 207 HOH HOH . J 5 HOH A 208 353 208 HOH HOH . J 5 HOH A 209 354 209 HOH HOH . J 5 HOH A 210 355 210 HOH HOH . J 5 HOH A 211 356 211 HOH HOH . J 5 HOH A 212 357 212 HOH HOH . J 5 HOH A 213 358 213 HOH HOH . J 5 HOH A 214 359 214 HOH HOH . J 5 HOH A 215 360 215 HOH HOH . J 5 HOH A 216 361 216 HOH HOH . J 5 HOH A 217 362 217 HOH HOH . J 5 HOH A 218 363 218 HOH HOH . J 5 HOH A 219 364 219 HOH HOH . J 5 HOH A 220 365 220 HOH HOH . J 5 HOH A 221 366 221 HOH HOH . J 5 HOH A 222 367 222 HOH HOH . J 5 HOH A 223 368 223 HOH HOH . J 5 HOH A 224 369 224 HOH HOH . J 5 HOH A 225 370 225 HOH HOH . J 5 HOH A 226 371 226 HOH HOH . J 5 HOH A 227 372 227 HOH HOH . J 5 HOH A 228 373 228 HOH HOH . J 5 HOH A 229 374 229 HOH HOH . J 5 HOH A 230 375 230 HOH HOH . J 5 HOH A 231 376 231 HOH HOH . J 5 HOH A 232 377 232 HOH HOH . J 5 HOH A 233 378 233 HOH HOH . J 5 HOH A 234 379 234 HOH HOH . J 5 HOH A 235 380 235 HOH HOH . J 5 HOH A 236 381 236 HOH HOH . J 5 HOH A 237 382 237 HOH HOH . J 5 HOH A 238 383 238 HOH HOH . J 5 HOH A 239 384 239 HOH HOH . J 5 HOH A 240 385 240 HOH HOH . J 5 HOH A 241 386 241 HOH HOH . J 5 HOH A 242 387 242 HOH HOH . J 5 HOH A 243 388 243 HOH HOH . J 5 HOH A 244 389 244 HOH HOH . J 5 HOH A 245 390 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 4 -32.788 25.937 8.912 1 56.99 ? S SO4 4 A 1 HETATM 2 O O1 SO4 . . . I 4 -32.558 27.105 8.041 1 57.93 ? O1 SO4 4 A 1 HETATM 3 O O2 SO4 . . . I 4 -32.458 24.701 8.178 1 56.73 ? O2 SO4 4 A 1 HETATM 4 O O3 SO4 . . . I 4 -31.936 26.048 10.113 1 56.6 ? O3 SO4 4 A 1 HETATM 5 O O4 SO4 . . . I 4 -34.207 25.896 9.315 1 57.63 ? O4 SO4 4 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #