data_3AYM # _model_server_result.job_id MwE6Sil_ks6ylGgdpj_Cow _model_server_result.datetime_utc '2024-11-23 11:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1004}' # _entry.id 3AYM # _exptl.entry_id 3AYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 790.145 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AYM _cell.length_a 122.36 _cell.length_b 122.36 _cell.length_c 158.22 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 108 1_555 A SG CYS 186 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 108 B CYS 108 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A NZ LYS 305 A LYS 305 1_555 E C15 RET . A RET 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.271 ? covale ? covale2 B NZ LYS 305 B LYS 305 1_555 I C15 RET . B RET 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.285 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 285 n n P O14 PC1 doub 286 n n P O13 PC1 sing 287 n n P O11 PC1 sing 288 n n O13 C11 PC1 sing 289 n n C11 C12 PC1 sing 290 n n C11 H111 PC1 sing 291 n n C11 H112 PC1 sing 292 n n C12 N PC1 sing 293 n n C12 H121 PC1 sing 294 n n C12 H122 PC1 sing 295 n n N C13 PC1 sing 296 n n N C14 PC1 sing 297 n n N C15 PC1 sing 298 n n C13 H131 PC1 sing 299 n n C13 H132 PC1 sing 300 n n C13 H133 PC1 sing 301 n n C14 H141 PC1 sing 302 n n C14 H142 PC1 sing 303 n n C14 H143 PC1 sing 304 n n C15 H151 PC1 sing 305 n n C15 H152 PC1 sing 306 n n C15 H153 PC1 sing 307 n n O11 C1 PC1 sing 308 n n C1 C2 PC1 sing 309 n n C1 H11 PC1 sing 310 n n C1 H12 PC1 sing 311 n n C2 O21 PC1 sing 312 n n C2 C3 PC1 sing 313 n n C2 H2 PC1 sing 314 n n O21 C21 PC1 sing 315 n n C21 O22 PC1 doub 316 n n C21 C22 PC1 sing 317 n n C22 C23 PC1 sing 318 n n C22 H221 PC1 sing 319 n n C22 H222 PC1 sing 320 n n C23 C24 PC1 sing 321 n n C23 H231 PC1 sing 322 n n C23 H232 PC1 sing 323 n n C24 C25 PC1 sing 324 n n C24 H241 PC1 sing 325 n n C24 H242 PC1 sing 326 n n C25 C26 PC1 sing 327 n n C25 H251 PC1 sing 328 n n C25 H252 PC1 sing 329 n n C26 C27 PC1 sing 330 n n C26 H261 PC1 sing 331 n n C26 H262 PC1 sing 332 n n C27 C28 PC1 sing 333 n n C27 H271 PC1 sing 334 n n C27 H272 PC1 sing 335 n n C28 C29 PC1 sing 336 n n C28 H281 PC1 sing 337 n n C28 H282 PC1 sing 338 n n C29 C2A PC1 sing 339 n n C29 H291 PC1 sing 340 n n C29 H292 PC1 sing 341 n n C2A C2B PC1 sing 342 n n C2A H2A1 PC1 sing 343 n n C2A H2A2 PC1 sing 344 n n C2B C2C PC1 sing 345 n n C2B H2B1 PC1 sing 346 n n C2B H2B2 PC1 sing 347 n n C2C C2D PC1 sing 348 n n C2C H2C1 PC1 sing 349 n n C2C H2C2 PC1 sing 350 n n C2D C2E PC1 sing 351 n n C2D H2D1 PC1 sing 352 n n C2D H2D2 PC1 sing 353 n n C2E C2F PC1 sing 354 n n C2E H2E1 PC1 sing 355 n n C2E H2E2 PC1 sing 356 n n C2F C2G PC1 sing 357 n n C2F H2F1 PC1 sing 358 n n C2F H2F2 PC1 sing 359 n n C2G C2H PC1 sing 360 n n C2G H2G1 PC1 sing 361 n n C2G H2G2 PC1 sing 362 n n C2H C2I PC1 sing 363 n n C2H H2H1 PC1 sing 364 n n C2H H2H2 PC1 sing 365 n n C2I H2I1 PC1 sing 366 n n C2I H2I2 PC1 sing 367 n n C2I H2I3 PC1 sing 368 n n C3 O31 PC1 sing 369 n n C3 H31 PC1 sing 370 n n C3 H32 PC1 sing 371 n n O31 C31 PC1 sing 372 n n C31 O32 PC1 doub 373 n n C31 C32 PC1 sing 374 n n C32 C33 PC1 sing 375 n n C32 H321 PC1 sing 376 n n C32 H322 PC1 sing 377 n n C33 C34 PC1 sing 378 n n C33 H331 PC1 sing 379 n n C33 H332 PC1 sing 380 n n C34 C35 PC1 sing 381 n n C34 H341 PC1 sing 382 n n C34 H342 PC1 sing 383 n n C35 C36 PC1 sing 384 n n C35 H351 PC1 sing 385 n n C35 H352 PC1 sing 386 n n C36 C37 PC1 sing 387 n n C36 H361 PC1 sing 388 n n C36 H362 PC1 sing 389 n n C37 C38 PC1 sing 390 n n C37 H371 PC1 sing 391 n n C37 H372 PC1 sing 392 n n C38 C39 PC1 sing 393 n n C38 H381 PC1 sing 394 n n C38 H382 PC1 sing 395 n n C39 C3A PC1 sing 396 n n C39 H391 PC1 sing 397 n n C39 H392 PC1 sing 398 n n C3A C3B PC1 sing 399 n n C3A H3A1 PC1 sing 400 n n C3A H3A2 PC1 sing 401 n n C3B C3C PC1 sing 402 n n C3B H3B1 PC1 sing 403 n n C3B H3B2 PC1 sing 404 n n C3C C3D PC1 sing 405 n n C3C H3C1 PC1 sing 406 n n C3C H3C2 PC1 sing 407 n n C3D C3E PC1 sing 408 n n C3D H3D1 PC1 sing 409 n n C3D H3D2 PC1 sing 410 n n C3E C3F PC1 sing 411 n n C3E H3E1 PC1 sing 412 n n C3E H3E2 PC1 sing 413 n n C3F C3G PC1 sing 414 n n C3F H3F1 PC1 sing 415 n n C3F H3F2 PC1 sing 416 n n C3G C3H PC1 sing 417 n n C3G H3G1 PC1 sing 418 n n C3G H3G2 PC1 sing 419 n n C3H C3I PC1 sing 420 n n C3H H3H1 PC1 sing 421 n n C3H H3H2 PC1 sing 422 n n C3I H3I1 PC1 sing 423 n n C3I H3I2 PC1 sing 424 n n C3I H3I3 PC1 sing 425 n n # _atom_sites.entry_id 3AYM _atom_sites.fract_transf_matrix[1][1] 0.008173 _atom_sites.fract_transf_matrix[1][2] 0.004718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLM A 1 1001 1001 PLM PLM . D 3 BOG A 1 1005 1005 BOG BOG . E 4 RET A 1 1000 1000 RET RET . F 5 SO4 B 1 449 449 SO4 SO4 . G 6 PC1 B 1 1004 1004 PC1 PC1 . H 3 BOG B 1 1005 1005 BOG BOG . I 4 RET B 1 1000 1000 RET RET . J 7 HOH A 1 500 500 HOH HOH . J 7 HOH A 2 501 501 HOH HOH . J 7 HOH A 3 502 502 HOH HOH . J 7 HOH A 4 503 503 HOH HOH . J 7 HOH A 5 504 504 HOH HOH . J 7 HOH A 6 505 505 HOH HOH . J 7 HOH A 7 506 506 HOH HOH . J 7 HOH A 8 507 507 HOH HOH . J 7 HOH A 9 508 508 HOH HOH . J 7 HOH A 10 509 509 HOH HOH . J 7 HOH A 11 510 510 HOH HOH . J 7 HOH A 12 511 511 HOH HOH . J 7 HOH A 13 512 512 HOH HOH . J 7 HOH A 14 513 513 HOH HOH . J 7 HOH A 15 514 514 HOH HOH . J 7 HOH A 16 515 515 HOH HOH . J 7 HOH A 17 516 516 HOH HOH . J 7 HOH A 18 517 517 HOH HOH . J 7 HOH A 19 518 518 HOH HOH . J 7 HOH A 20 519 519 HOH HOH . J 7 HOH A 21 520 520 HOH HOH . J 7 HOH A 22 521 521 HOH HOH . J 7 HOH A 23 522 522 HOH HOH . J 7 HOH A 24 523 523 HOH HOH . J 7 HOH A 25 524 524 HOH HOH . J 7 HOH A 26 525 525 HOH HOH . J 7 HOH A 27 526 526 HOH HOH . J 7 HOH A 28 527 527 HOH HOH . J 7 HOH A 29 529 529 HOH HOH . K 7 HOH B 1 500 500 HOH HOH . K 7 HOH B 2 501 501 HOH HOH . K 7 HOH B 3 502 502 HOH HOH . K 7 HOH B 4 503 503 HOH HOH . K 7 HOH B 5 504 504 HOH HOH . K 7 HOH B 6 505 505 HOH HOH . K 7 HOH B 7 506 506 HOH HOH . K 7 HOH B 8 507 507 HOH HOH . K 7 HOH B 9 508 508 HOH HOH . K 7 HOH B 10 509 509 HOH HOH . K 7 HOH B 11 510 510 HOH HOH . K 7 HOH B 12 511 511 HOH HOH . K 7 HOH B 13 512 512 HOH HOH . K 7 HOH B 14 513 513 HOH HOH . K 7 HOH B 15 514 514 HOH HOH . K 7 HOH B 16 515 515 HOH HOH . K 7 HOH B 17 516 516 HOH HOH . K 7 HOH B 18 517 517 HOH HOH . K 7 HOH B 19 518 518 HOH HOH . K 7 HOH B 20 519 519 HOH HOH . K 7 HOH B 21 520 520 HOH HOH . K 7 HOH B 22 521 521 HOH HOH . K 7 HOH B 23 522 522 HOH HOH . K 7 HOH B 24 523 523 HOH HOH . K 7 HOH B 25 524 524 HOH HOH . K 7 HOH B 26 525 525 HOH HOH . K 7 HOH B 27 526 526 HOH HOH . K 7 HOH B 28 527 527 HOH HOH . K 7 HOH B 29 528 528 HOH HOH . K 7 HOH B 30 529 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . G 6 17.781 56.41 28.242 1 120.35 ? O12 PC1 1004 B 1 HETATM 2 P P PC1 . . . G 6 17.068 55.943 26.886 1 119.07 ? P PC1 1004 B 1 HETATM 3 O O14 PC1 . . . G 6 15.802 56.825 26.548 1 120.17 ? O14 PC1 1004 B 1 HETATM 4 O O13 PC1 . . . G 6 16.746 54.431 27.081 1 115.89 ? O13 PC1 1004 B 1 HETATM 5 C C11 PC1 . . . G 6 15.886 54.13 28.215 1 112.29 ? C11 PC1 1004 B 1 HETATM 6 C C12 PC1 . . . G 6 15.661 52.608 28.291 1 110.75 ? C12 PC1 1004 B 1 HETATM 7 O O11 PC1 . . . G 6 18.028 55.983 25.599 1 115.57 ? O11 PC1 1004 B 1 HETATM 8 C C1 PC1 . . . G 6 19.418 56.408 25.806 1 106.55 ? C1 PC1 1004 B 1 HETATM 9 C C2 PC1 . . . G 6 19.931 57.522 24.839 1 99.18 ? C2 PC1 1004 B 1 HETATM 10 O O21 PC1 . . . G 6 19.783 57.117 23.402 1 96.49 ? O21 PC1 1004 B 1 HETATM 11 C C21 PC1 . . . G 6 18.531 57.505 22.527 1 90.8 ? C21 PC1 1004 B 1 HETATM 12 O O22 PC1 . . . G 6 17.52 58.177 22.926 1 88.38 ? O22 PC1 1004 B 1 HETATM 13 C C22 PC1 . . . G 6 18.519 57.061 21.106 1 84.78 ? C22 PC1 1004 B 1 HETATM 14 C C23 PC1 . . . G 6 19.951 57.09 20.452 1 76.61 ? C23 PC1 1004 B 1 HETATM 15 C C24 PC1 . . . G 6 20.159 58.26 19.482 1 69.52 ? C24 PC1 1004 B 1 HETATM 16 C C25 PC1 . . . G 6 19.744 57.933 18.011 1 64.92 ? C25 PC1 1004 B 1 HETATM 17 C C26 PC1 . . . G 6 20.878 58.045 17.057 1 57.4 ? C26 PC1 1004 B 1 HETATM 18 C C27 PC1 . . . G 6 20.394 57.722 15.631 1 54.46 ? C27 PC1 1004 B 1 HETATM 19 C C28 PC1 . . . G 6 21.526 57.823 14.727 1 57.46 ? C28 PC1 1004 B 1 HETATM 20 C C29 PC1 . . . G 6 21.12 58.597 13.535 1 59.21 ? C29 PC1 1004 B 1 HETATM 21 C C2A PC1 . . . G 6 22.253 58.763 12.503 1 55.7 ? C2A PC1 1004 B 1 HETATM 22 C C2B PC1 . . . G 6 21.757 59.539 11.335 1 55.49 ? C2B PC1 1004 B 1 HETATM 23 C C2C PC1 . . . G 6 22.835 59.752 10.229 1 61.2 ? C2C PC1 1004 B 1 HETATM 24 C C2D PC1 . . . G 6 22.331 60.571 8.992 1 61.53 ? C2D PC1 1004 B 1 HETATM 25 C C2E PC1 . . . G 6 22.328 59.704 7.675 1 62.1 ? C2E PC1 1004 B 1 HETATM 26 C C2F PC1 . . . G 6 23.679 59.681 6.954 1 59.26 ? C2F PC1 1004 B 1 HETATM 27 C C3 PC1 . . . G 6 21.4 57.875 25.154 1 94.69 ? C3 PC1 1004 B 1 HETATM 28 O O31 PC1 . . . G 6 22.288 56.729 24.804 1 85.25 ? O31 PC1 1004 B 1 HETATM 29 C C31 PC1 . . . G 6 23.683 57.162 24.565 1 78.89 ? C31 PC1 1004 B 1 HETATM 30 O O32 PC1 . . . G 6 24.277 57.976 25.308 1 79.76 ? O32 PC1 1004 B 1 HETATM 31 C C32 PC1 . . . G 6 24.377 56.573 23.364 1 71.37 ? C32 PC1 1004 B 1 HETATM 32 C C33 PC1 . . . G 6 23.603 56.49 22.05 1 65.22 ? C33 PC1 1004 B 1 HETATM 33 C C34 PC1 . . . G 6 24.469 55.885 21.025 1 59.53 ? C34 PC1 1004 B 1 HETATM 34 C C35 PC1 . . . G 6 24.266 56.589 19.689 1 54.17 ? C35 PC1 1004 B 1 HETATM 35 C C36 PC1 . . . G 6 25.081 56.012 18.701 1 48.34 ? C36 PC1 1004 B 1 HETATM 36 C C37 PC1 . . . G 6 24.807 56.78 17.411 1 44.56 ? C37 PC1 1004 B 1 HETATM 37 C C38 PC1 . . . G 6 24.818 55.875 16.284 1 46.13 ? C38 PC1 1004 B 1 HETATM 38 C C39 PC1 . . . G 6 25.49 56.508 15.067 1 47.46 ? C39 PC1 1004 B 1 HETATM 39 C C3A PC1 . . . G 6 25.465 55.563 13.905 1 48.06 ? C3A PC1 1004 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #