data_3AYM
#
_model_server_result.job_id            fEvNAr_M0iB6ANhcixPezA 
_model_server_result.datetime_utc      '2024-11-23 10:44:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aym 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1005}' 
#
_entry.id    3AYM 
#
_exptl.entry_id    3AYM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3AYM 
_cell.length_a            122.36 
_cell.length_b            122.36 
_cell.length_c            158.22 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AYM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 108 A CYS 108 1_555 A SG CYS 186 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 B SG CYS 108 B CYS 108 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A NZ LYS 305 A LYS 305 1_555 E C15 RET . A RET 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.271 ? 
covale ? covale2 B NZ LYS 305 B LYS 305 1_555 I C15 RET . B RET 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.285 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3AYM 
_atom_sites.fract_transf_matrix[1][1]    0.008173 
_atom_sites.fract_transf_matrix[1][2]    0.004718 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLM A 1 1001 1001 PLM PLM . 
D 3 BOG A 1 1005 1005 BOG BOG . 
E 4 RET A 1 1000 1000 RET RET . 
F 5 SO4 B 1 449 449 SO4 SO4 . 
G 6 PC1 B 1 1004 1004 PC1 PC1 . 
H 3 BOG B 1 1005 1005 BOG BOG . 
I 4 RET B 1 1000 1000 RET RET . 
J 7 HOH A 1 500 500 HOH HOH . 
J 7 HOH A 2 501 501 HOH HOH . 
J 7 HOH A 3 502 502 HOH HOH . 
J 7 HOH A 4 503 503 HOH HOH . 
J 7 HOH A 5 504 504 HOH HOH . 
J 7 HOH A 6 505 505 HOH HOH . 
J 7 HOH A 7 506 506 HOH HOH . 
J 7 HOH A 8 507 507 HOH HOH . 
J 7 HOH A 9 508 508 HOH HOH . 
J 7 HOH A 10 509 509 HOH HOH . 
J 7 HOH A 11 510 510 HOH HOH . 
J 7 HOH A 12 511 511 HOH HOH . 
J 7 HOH A 13 512 512 HOH HOH . 
J 7 HOH A 14 513 513 HOH HOH . 
J 7 HOH A 15 514 514 HOH HOH . 
J 7 HOH A 16 515 515 HOH HOH . 
J 7 HOH A 17 516 516 HOH HOH . 
J 7 HOH A 18 517 517 HOH HOH . 
J 7 HOH A 19 518 518 HOH HOH . 
J 7 HOH A 20 519 519 HOH HOH . 
J 7 HOH A 21 520 520 HOH HOH . 
J 7 HOH A 22 521 521 HOH HOH . 
J 7 HOH A 23 522 522 HOH HOH . 
J 7 HOH A 24 523 523 HOH HOH . 
J 7 HOH A 25 524 524 HOH HOH . 
J 7 HOH A 26 525 525 HOH HOH . 
J 7 HOH A 27 526 526 HOH HOH . 
J 7 HOH A 28 527 527 HOH HOH . 
J 7 HOH A 29 529 529 HOH HOH . 
K 7 HOH B 1 500 500 HOH HOH . 
K 7 HOH B 2 501 501 HOH HOH . 
K 7 HOH B 3 502 502 HOH HOH . 
K 7 HOH B 4 503 503 HOH HOH . 
K 7 HOH B 5 504 504 HOH HOH . 
K 7 HOH B 6 505 505 HOH HOH . 
K 7 HOH B 7 506 506 HOH HOH . 
K 7 HOH B 8 507 507 HOH HOH . 
K 7 HOH B 9 508 508 HOH HOH . 
K 7 HOH B 10 509 509 HOH HOH . 
K 7 HOH B 11 510 510 HOH HOH . 
K 7 HOH B 12 511 511 HOH HOH . 
K 7 HOH B 13 512 512 HOH HOH . 
K 7 HOH B 14 513 513 HOH HOH . 
K 7 HOH B 15 514 514 HOH HOH . 
K 7 HOH B 16 515 515 HOH HOH . 
K 7 HOH B 17 516 516 HOH HOH . 
K 7 HOH B 18 517 517 HOH HOH . 
K 7 HOH B 19 518 518 HOH HOH . 
K 7 HOH B 20 519 519 HOH HOH . 
K 7 HOH B 21 520 520 HOH HOH . 
K 7 HOH B 22 521 521 HOH HOH . 
K 7 HOH B 23 522 522 HOH HOH . 
K 7 HOH B 24 523 523 HOH HOH . 
K 7 HOH B 25 524 524 HOH HOH . 
K 7 HOH B 26 525 525 HOH HOH . 
K 7 HOH B 27 526 526 HOH HOH . 
K 7 HOH B 28 527 527 HOH HOH . 
K 7 HOH B 29 528 528 HOH HOH . 
K 7 HOH B 30 529 529 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . D 3 12.307 44.158 90.242 1 93.53 ? C1 BOG 1005 A 1 
HETATM 2 O O1 BOG . . . D 3 13.163 44.112 89.169 1 86.85 ? O1 BOG 1005 A 1 
HETATM 3 C C2 BOG . . . D 3 12.74 42.933 91.081 1 97.01 ? C2 BOG 1005 A 1 
HETATM 4 O O2 BOG . . . D 3 12.604 41.625 90.372 1 100.87 ? O2 BOG 1005 A 1 
HETATM 5 C C3 BOG . . . D 3 11.811 43.017 92.221 1 97.58 ? C3 BOG 1005 A 1 
HETATM 6 O O3 BOG . . . D 3 12.195 41.932 93.013 1 95.67 ? O3 BOG 1005 A 1 
HETATM 7 C C4 BOG . . . D 3 11.976 44.405 92.935 1 97.06 ? C4 BOG 1005 A 1 
HETATM 8 O O4 BOG . . . D 3 11.091 44.477 94.001 1 95.52 ? O4 BOG 1005 A 1 
HETATM 9 C C5 BOG . . . D 3 11.574 45.561 92.086 1 96.89 ? C5 BOG 1005 A 1 
HETATM 10 O O5 BOG . . . D 3 12.473 45.47 90.978 1 94.93 ? O5 BOG 1005 A 1 
HETATM 11 C C6 BOG . . . D 3 11.764 46.972 92.816 1 96.72 ? C6 BOG 1005 A 1 
HETATM 12 O O6 BOG . . . D 3 10.559 47.885 92.556 1 92 ? O6 BOG 1005 A 1 
HETATM 13 C C1' BOG . . . D 3 12.228 44.283 88.114 1 78.94 ? C1' BOG 1005 A 1 
HETATM 14 C C2' BOG . . . D 3 13.03 44.84 87.027 1 73.47 ? C2' BOG 1005 A 1 
HETATM 15 C C3' BOG . . . D 3 12.769 43.881 85.896 1 68.65 ? C3' BOG 1005 A 1 
HETATM 16 C C4' BOG . . . D 3 14.038 43.874 85.208 1 65.31 ? C4' BOG 1005 A 1 
HETATM 17 C C5' BOG . . . D 3 13.747 43.452 83.793 1 59.01 ? C5' BOG 1005 A 1 
HETATM 18 C C6' BOG . . . D 3 14.83 42.553 83.508 1 53.81 ? C6' BOG 1005 A 1 
HETATM 19 C C7' BOG . . . D 3 14.362 41.893 82.267 1 53.71 ? C7' BOG 1005 A 1 
HETATM 20 C C8' BOG . . . D 3 14.598 40.51 82.566 1 50.72 ? C8' BOG 1005 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#