data_3AZ3 # _model_server_result.job_id XLeoiOniCcy28VCCuQaNiw _model_server_result.datetime_utc '2024-11-04 20:09:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3az3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3AZ3 # _exptl.entry_id 3AZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.694 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S)-4-hydroxy-5-[4-(3-{4-[(3S)-3-hydroxy-4,4-dimethylpentyl]-3-methylphenyl}pentan-3-yl)-2-methylphenoxy]pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AZ3 _cell.length_a 44.32 _cell.length_b 52.222 _cell.length_c 131.946 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H46 O5' _chem_comp.formula_weight 498.694 _chem_comp.id DS6 _chem_comp.mon_nstd_flag . _chem_comp.name '(4S)-4-hydroxy-5-[4-(3-{4-[(3S)-3-hydroxy-4,4-dimethylpentyl]-3-methylphenyl}pentan-3-yl)-2-methylphenoxy]pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DS6 doub 83 n y C1 C6 DS6 sing 84 n y C1 O62 DS6 sing 85 n n O1 C64 DS6 sing 86 n n C2 C3 DS6 sing 87 n y O2 C16 DS6 doub 88 n n C3 C4 DS6 doub 89 n y C4 C5 DS6 sing 90 n y C4 C10 DS6 sing 91 n n C5 C6 DS6 doub 92 n y C6 C34 DS6 sing 93 n n C7 C28 DS6 sing 94 n n C7 C43 DS6 sing 95 n n C8 C48 DS6 sing 96 n n C9 C27 DS6 sing 97 n n C10 C11 DS6 sing 98 n n C10 C12 DS6 sing 99 n n C10 C13 DS6 sing 100 n n C11 C26 DS6 doub 101 n y C11 C30 DS6 sing 102 n y C12 C20 DS6 sing 103 n n C13 C14 DS6 sing 104 n n C15 C48 DS6 sing 105 n n C16 C17 DS6 sing 106 n n C16 O71 DS6 sing 107 n n C17 C67 DS6 sing 108 n n C18 C48 DS6 sing 109 n n C26 C27 DS6 sing 110 n y C27 C28 DS6 doub 111 n y C28 C29 DS6 sing 112 n y C29 C30 DS6 doub 113 n y C43 C44 DS6 sing 114 n n C44 O47 DS6 sing 115 n n C44 C48 DS6 sing 116 n n O62 C63 DS6 sing 117 n n C63 C64 DS6 sing 118 n n C64 C67 DS6 sing 119 n n O1 HO1 DS6 sing 120 n n C2 H2 DS6 sing 121 n n C3 H3 DS6 sing 122 n n C5 H5 DS6 sing 123 n n C7 H7 DS6 sing 124 n n C7 H7A DS6 sing 125 n n C8 H8 DS6 sing 126 n n C8 H8A DS6 sing 127 n n C8 H8B DS6 sing 128 n n C9 H9 DS6 sing 129 n n C9 H9A DS6 sing 130 n n C9 H9B DS6 sing 131 n n C12 H12 DS6 sing 132 n n C12 H12A DS6 sing 133 n n C13 H13 DS6 sing 134 n n C13 H13A DS6 sing 135 n n C14 H14 DS6 sing 136 n n C14 H14A DS6 sing 137 n n C14 H14B DS6 sing 138 n n C15 H15 DS6 sing 139 n n C15 H15A DS6 sing 140 n n C15 H15B DS6 sing 141 n n C17 H17 DS6 sing 142 n n C17 H17A DS6 sing 143 n n C18 H18 DS6 sing 144 n n C18 H18A DS6 sing 145 n n C18 H18B DS6 sing 146 n n C20 H20 DS6 sing 147 n n C20 H20A DS6 sing 148 n n C20 H20B DS6 sing 149 n n C26 H26 DS6 sing 150 n n C29 H29 DS6 sing 151 n n C30 H30 DS6 sing 152 n n C34 H34 DS6 sing 153 n n C34 H34A DS6 sing 154 n n C34 H34B DS6 sing 155 n n C43 H43 DS6 sing 156 n n C43 H43A DS6 sing 157 n n C44 H44 DS6 sing 158 n n O47 HO47 DS6 sing 159 n n C63 H63 DS6 sing 160 n n C63 H63A DS6 sing 161 n n C64 H64 DS6 sing 162 n n C67 H67 DS6 sing 163 n n C67 H67A DS6 sing 164 n n O71 HO71 DS6 sing 165 n n # _atom_sites.entry_id 3AZ3 _atom_sites.fract_transf_matrix[1][1] 0.022563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DS6 A 1 1 1 DS6 DS6 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 47 47 HOH HOH . C 3 HOH A 47 48 48 HOH HOH . C 3 HOH A 48 49 49 HOH HOH . C 3 HOH A 49 50 50 HOH HOH . C 3 HOH A 50 51 51 HOH HOH . C 3 HOH A 51 52 52 HOH HOH . C 3 HOH A 52 53 53 HOH HOH . C 3 HOH A 53 54 54 HOH HOH . C 3 HOH A 54 55 55 HOH HOH . C 3 HOH A 55 56 56 HOH HOH . C 3 HOH A 56 57 57 HOH HOH . C 3 HOH A 57 58 58 HOH HOH . C 3 HOH A 58 59 59 HOH HOH . C 3 HOH A 59 60 60 HOH HOH . C 3 HOH A 60 61 61 HOH HOH . C 3 HOH A 61 62 62 HOH HOH . C 3 HOH A 62 63 63 HOH HOH . C 3 HOH A 63 64 64 HOH HOH . C 3 HOH A 64 65 65 HOH HOH . C 3 HOH A 65 66 66 HOH HOH . C 3 HOH A 66 67 67 HOH HOH . C 3 HOH A 67 68 68 HOH HOH . C 3 HOH A 68 69 69 HOH HOH . C 3 HOH A 69 70 70 HOH HOH . C 3 HOH A 70 71 71 HOH HOH . C 3 HOH A 71 72 72 HOH HOH . C 3 HOH A 72 73 73 HOH HOH . C 3 HOH A 73 74 74 HOH HOH . C 3 HOH A 74 75 75 HOH HOH . C 3 HOH A 75 76 76 HOH HOH . C 3 HOH A 76 77 77 HOH HOH . C 3 HOH A 77 78 78 HOH HOH . C 3 HOH A 78 79 79 HOH HOH . C 3 HOH A 79 80 80 HOH HOH . C 3 HOH A 80 81 81 HOH HOH . C 3 HOH A 81 82 82 HOH HOH . C 3 HOH A 82 83 83 HOH HOH . C 3 HOH A 83 84 84 HOH HOH . C 3 HOH A 84 85 85 HOH HOH . C 3 HOH A 85 86 86 HOH HOH . C 3 HOH A 86 87 87 HOH HOH . C 3 HOH A 87 88 88 HOH HOH . C 3 HOH A 88 89 89 HOH HOH . C 3 HOH A 89 90 90 HOH HOH . C 3 HOH A 90 91 91 HOH HOH . C 3 HOH A 91 92 92 HOH HOH . C 3 HOH A 92 93 93 HOH HOH . C 3 HOH A 93 94 94 HOH HOH . C 3 HOH A 94 95 95 HOH HOH . C 3 HOH A 95 96 96 HOH HOH . C 3 HOH A 96 97 97 HOH HOH . C 3 HOH A 97 98 98 HOH HOH . C 3 HOH A 98 99 99 HOH HOH . C 3 HOH A 99 100 100 HOH HOH . C 3 HOH A 100 101 101 HOH HOH . C 3 HOH A 101 102 102 HOH HOH . C 3 HOH A 102 103 103 HOH HOH . C 3 HOH A 103 104 104 HOH HOH . C 3 HOH A 104 105 105 HOH HOH . C 3 HOH A 105 106 106 HOH HOH . C 3 HOH A 106 107 107 HOH HOH . C 3 HOH A 107 108 108 HOH HOH . C 3 HOH A 108 109 109 HOH HOH . C 3 HOH A 109 110 110 HOH HOH . C 3 HOH A 110 111 111 HOH HOH . C 3 HOH A 111 112 112 HOH HOH . C 3 HOH A 112 113 113 HOH HOH . C 3 HOH A 113 114 114 HOH HOH . C 3 HOH A 114 115 115 HOH HOH . C 3 HOH A 115 116 116 HOH HOH . C 3 HOH A 116 117 117 HOH HOH . C 3 HOH A 117 118 118 HOH HOH . C 3 HOH A 118 119 119 HOH HOH . C 3 HOH A 119 500 1 HOH HOH . C 3 HOH A 120 501 120 HOH HOH . C 3 HOH A 121 502 121 HOH HOH . C 3 HOH A 122 503 122 HOH HOH . C 3 HOH A 123 504 123 HOH HOH . C 3 HOH A 124 505 124 HOH HOH . C 3 HOH A 125 506 125 HOH HOH . C 3 HOH A 126 507 126 HOH HOH . C 3 HOH A 127 508 127 HOH HOH . C 3 HOH A 128 509 128 HOH HOH . C 3 HOH A 129 510 129 HOH HOH . C 3 HOH A 130 511 130 HOH HOH . C 3 HOH A 131 512 131 HOH HOH . C 3 HOH A 132 513 132 HOH HOH . C 3 HOH A 133 514 133 HOH HOH . C 3 HOH A 134 515 134 HOH HOH . C 3 HOH A 135 516 135 HOH HOH . C 3 HOH A 136 517 136 HOH HOH . C 3 HOH A 137 518 137 HOH HOH . C 3 HOH A 138 519 138 HOH HOH . C 3 HOH A 139 520 139 HOH HOH . C 3 HOH A 140 521 140 HOH HOH . C 3 HOH A 141 522 141 HOH HOH . C 3 HOH A 142 523 142 HOH HOH . C 3 HOH A 143 524 143 HOH HOH . C 3 HOH A 144 525 144 HOH HOH . C 3 HOH A 145 526 145 HOH HOH . C 3 HOH A 146 527 146 HOH HOH . C 3 HOH A 147 528 147 HOH HOH . C 3 HOH A 148 529 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DS6 . . . B 2 13.569 19.536 33.525 1 15.59 ? C1 DS6 1 A 1 HETATM 2 O O1 DS6 . . . B 2 15.231 16.459 35.469 1 22.34 ? O1 DS6 1 A 1 HETATM 3 C C2 DS6 . . . B 2 14.486 20.411 32.847 1 14.37 ? C2 DS6 1 A 1 HETATM 4 O O2 DS6 . . . B 2 13.387 12.761 36.392 1 22.44 ? O2 DS6 1 A 1 HETATM 5 C C3 DS6 . . . B 2 14.266 21.769 32.795 1 13.59 ? C3 DS6 1 A 1 HETATM 6 C C4 DS6 . . . B 2 13.134 22.313 33.417 1 13.23 ? C4 DS6 1 A 1 HETATM 7 C C5 DS6 . . . B 2 12.221 21.402 34.065 1 15.13 ? C5 DS6 1 A 1 HETATM 8 C C6 DS6 . . . B 2 12.414 20.035 34.135 1 15.86 ? C6 DS6 1 A 1 HETATM 9 C C7 DS6 . . . B 2 7.437 25.89 33.085 1 16.05 ? C7 DS6 1 A 1 HETATM 10 C C8 DS6 . . . B 2 2.445 25.08 33.476 1 18.14 ? C8 DS6 1 A 1 HETATM 11 C C9 DS6 . . . B 2 9.446 27.25 35.015 1 15.03 ? C9 DS6 1 A 1 HETATM 12 C C10 DS6 . . . B 2 12.935 23.846 33.481 1 14.98 ? C10 DS6 1 A 1 HETATM 13 C C11 DS6 . . . B 2 11.459 24.357 33.471 1 14.5 ? C11 DS6 1 A 1 HETATM 14 C C12 DS6 . . . B 2 13.543 24.619 32.278 1 15.05 ? C12 DS6 1 A 1 HETATM 15 C C13 DS6 . . . B 2 13.758 24.236 34.762 1 15.19 ? C13 DS6 1 A 1 HETATM 16 C C14 DS6 . . . B 2 13.204 23.823 36.136 1 15.72 ? C14 DS6 1 A 1 HETATM 17 C C15 DS6 . . . B 2 3.768 23.948 35.338 1 18.26 ? C15 DS6 1 A 1 HETATM 18 C C16 DS6 . . . B 2 13.468 13.899 35.892 1 23.56 ? C16 DS6 1 A 1 HETATM 19 C C17 DS6 . . . B 2 13.78 13.947 34.402 1 23.72 ? C17 DS6 1 A 1 HETATM 20 C C18 DS6 . . . B 2 3.963 23.246 33.002 1 17.29 ? C18 DS6 1 A 1 HETATM 21 C C20 DS6 . . . B 2 13.148 24.226 30.849 1 16.33 ? C20 DS6 1 A 1 HETATM 22 C C26 DS6 . . . B 2 11.067 25.494 34.225 1 14.86 ? C26 DS6 1 A 1 HETATM 23 C C27 DS6 . . . B 2 9.761 26.031 34.141 1 14.67 ? C27 DS6 1 A 1 HETATM 24 C C28 DS6 . . . B 2 8.806 25.377 33.285 1 15.07 ? C28 DS6 1 A 1 HETATM 25 C C29 DS6 . . . B 2 9.183 24.247 32.543 1 15.35 ? C29 DS6 1 A 1 HETATM 26 C C30 DS6 . . . B 2 10.454 23.733 32.651 1 14.73 ? C30 DS6 1 A 1 HETATM 27 C C34 DS6 . . . B 2 11.419 19.268 34.812 1 17.93 ? C34 DS6 1 A 1 HETATM 28 C C43 DS6 . . . B 2 6.439 24.922 33.735 1 16.32 ? C43 DS6 1 A 1 HETATM 29 C C44 DS6 . . . B 2 4.972 25.45 33.624 1 16.53 ? C44 DS6 1 A 1 HETATM 30 O O47 DS6 . . . B 2 4.796 26.571 34.475 1 16.22 ? O47 DS6 1 A 1 HETATM 31 C C48 DS6 . . . B 2 3.79 24.471 33.884 1 17.32 ? C48 DS6 1 A 1 HETATM 32 O O62 DS6 . . . B 2 13.626 18.163 33.655 1 17.74 ? O62 DS6 1 A 1 HETATM 33 C C63 DS6 . . . B 2 14.809 17.474 33.212 1 19.86 ? C63 DS6 1 A 1 HETATM 34 C C64 DS6 . . . B 2 15.004 16.201 34.076 1 21.98 ? C64 DS6 1 A 1 HETATM 35 C C67 DS6 . . . B 2 13.747 15.323 33.775 1 22.21 ? C67 DS6 1 A 1 HETATM 36 O O71 DS6 . . . B 2 13.33 14.974 36.528 1 24.44 ? O71 DS6 1 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #