data_3AZ7 # _model_server_result.job_id FTJhYJNO5BZV0JACAXpBBw _model_server_result.datetime_utc '2024-10-12 15:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3az7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":130}' # _entry.id 3AZ7 # _exptl.entry_id 3AZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AZ7 _cell.length_a 78.412 _cell.length_b 78.412 _cell.length_c 36.558 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc1 A SG CYS 6 A CYS 6 1_555 E PT PT . A PT 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc2 A ND1 HIS 15 A HIS 15 1_555 B PT PT . A PT 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 A NE2 HIS 15 A HIS 15 1_555 C PT PT . A PT 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc4 A O SER 60 A SER 60 1_555 G NA NA . A NA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 A O CYS 64 A CYS 64 1_555 G NA NA . A NA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc6 A OG SER 72 A SER 72 1_555 G NA NA . A NA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc7 A O ARG 73 A ARG 73 1_555 G NA NA . A NA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc8 C PT PT . A PT 131 1_555 H O HOH . A HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc9 E PT PT . A PT 133 1_555 H O HOH . A HOH 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc10 F PT PT . A PT 134 1_555 H O HOH . A HOH 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc11 G NA NA . A NA 135 1_555 H O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AZ7 _atom_sites.fract_transf_matrix[1][1] 0.012753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PT A 1 130 130 PT PT . C 2 PT A 1 131 131 PT PT . D 2 PT A 1 132 132 PT PT . E 2 PT A 1 133 133 PT PT . F 2 PT A 1 134 134 PT PT . G 3 NA A 1 135 135 NA NA . H 4 HOH A 1 136 136 HOH HOH . H 4 HOH A 2 137 137 HOH HOH . H 4 HOH A 3 138 138 HOH HOH . H 4 HOH A 4 139 139 HOH HOH . H 4 HOH A 5 140 140 HOH HOH . H 4 HOH A 6 141 141 HOH HOH . H 4 HOH A 7 142 142 HOH HOH . H 4 HOH A 8 143 143 HOH HOH . H 4 HOH A 9 144 144 HOH HOH . H 4 HOH A 10 145 145 HOH HOH . H 4 HOH A 11 146 146 HOH HOH . H 4 HOH A 12 147 147 HOH HOH . H 4 HOH A 13 148 148 HOH HOH . H 4 HOH A 14 149 149 HOH HOH . H 4 HOH A 15 150 150 HOH HOH . H 4 HOH A 16 151 151 HOH HOH . H 4 HOH A 17 152 152 HOH HOH . H 4 HOH A 18 153 153 HOH HOH . H 4 HOH A 19 154 154 HOH HOH . H 4 HOH A 20 155 155 HOH HOH . H 4 HOH A 21 156 156 HOH HOH . H 4 HOH A 22 157 157 HOH HOH . H 4 HOH A 23 158 158 HOH HOH . H 4 HOH A 24 159 159 HOH HOH . H 4 HOH A 25 160 160 HOH HOH . H 4 HOH A 26 161 161 HOH HOH . H 4 HOH A 27 162 162 HOH HOH . H 4 HOH A 28 163 163 HOH HOH . H 4 HOH A 29 164 164 HOH HOH . H 4 HOH A 30 165 165 HOH HOH . H 4 HOH A 31 166 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -12.33 _atom_site.Cartn_y 11.331 _atom_site.Cartn_z -1.449 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 124.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 130 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #