data_3B0W # _model_server_result.job_id '_OiV_E3vU9Nn1_TP5lC7xg' _model_server_result.datetime_utc '2024-11-24 07:17:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3B0W # _exptl.entry_id 3B0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 780.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGOXIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3B0W _cell.length_a 98.716 _cell.length_b 98.716 _cell.length_c 129.176 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C41 H64 O14' _chem_comp.formula_weight 780.938 _chem_comp.id DGX _chem_comp.mon_nstd_flag . _chem_comp.name DIGOXIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DGX sing 83 n n C1 C10 DGX sing 84 n n C2 C3 DGX sing 85 n n C3 O3 DGX sing 86 n n C3 C4 DGX sing 87 n n O3 C1X DGX sing 88 n n C4 C5 DGX sing 89 n n C5 C6 DGX sing 90 n n C5 C10 DGX sing 91 n n C6 C7 DGX sing 92 n n C7 C8 DGX sing 93 n n C8 C9 DGX sing 94 n n C8 C14 DGX sing 95 n n C9 C10 DGX sing 96 n n C9 C11 DGX sing 97 n n C10 C19 DGX sing 98 n n C11 C12 DGX sing 99 n n C12 O12 DGX sing 100 n n C12 C13 DGX sing 101 n n C13 C14 DGX sing 102 n n C13 C17 DGX sing 103 n n C13 C18 DGX sing 104 n n C14 O14 DGX sing 105 n n C14 C15 DGX sing 106 n n C15 C16 DGX sing 107 n n C16 C17 DGX sing 108 n n C17 C20 DGX sing 109 n n C1X C2X DGX sing 110 n n C1X O5X DGX sing 111 n n C1Y C2Y DGX sing 112 n n C1Y O4X DGX sing 113 n n C1Y O5Y DGX sing 114 n n C1Z C2Z DGX sing 115 n n C1Z O4Y DGX sing 116 n n C1Z O5Z DGX sing 117 n n C20 C21 DGX sing 118 n n C20 C22 DGX doub 119 n n C21 O21 DGX sing 120 n n O21 C23 DGX sing 121 n n C22 C23 DGX sing 122 n n C23 O23 DGX doub 123 n n C2X C3X DGX sing 124 n n C2Y C3Y DGX sing 125 n n C2Z C3Z DGX sing 126 n n C3X O3X DGX sing 127 n n C3X C4X DGX sing 128 n n C3Y O3Y DGX sing 129 n n C3Y C4Y DGX sing 130 n n C3Z O3Z DGX sing 131 n n C3Z C4Z DGX sing 132 n n C4X O4X DGX sing 133 n n C4X C5X DGX sing 134 n n C4Y O4Y DGX sing 135 n n C4Y C5Y DGX sing 136 n n C4Z O4Z DGX sing 137 n n C4Z C5Z DGX sing 138 n n C5X O5X DGX sing 139 n n C5X C6X DGX sing 140 n n C5Y O5Y DGX sing 141 n n C5Y C6Y DGX sing 142 n n C5Z O5Z DGX sing 143 n n C5Z C6Z DGX sing 144 n n C1 H1 DGX sing 145 n n C1 H1A DGX sing 146 n n C2 H2 DGX sing 147 n n C2 H2A DGX sing 148 n n C3 H3 DGX sing 149 n n C4 H4 DGX sing 150 n n C4 H4A DGX sing 151 n n C5 H5 DGX sing 152 n n C6 H6 DGX sing 153 n n C6 H6A DGX sing 154 n n C7 H7 DGX sing 155 n n C7 H7A DGX sing 156 n n C8 H8 DGX sing 157 n n C9 H9 DGX sing 158 n n C11 H11 DGX sing 159 n n C11 H11A DGX sing 160 n n C12 H12 DGX sing 161 n n O12 HO12 DGX sing 162 n n O14 HO14 DGX sing 163 n n C15 H15 DGX sing 164 n n C15 H15A DGX sing 165 n n C16 H16 DGX sing 166 n n C16 H16A DGX sing 167 n n C17 H17 DGX sing 168 n n C18 H18 DGX sing 169 n n C18 H18A DGX sing 170 n n C18 H18B DGX sing 171 n n C19 H19 DGX sing 172 n n C19 H19A DGX sing 173 n n C19 H19B DGX sing 174 n n C1X H1X DGX sing 175 n n C1Y H1Y DGX sing 176 n n C1Z H1Z DGX sing 177 n n C21 H21 DGX sing 178 n n C21 H21A DGX sing 179 n n C22 H22 DGX sing 180 n n C2X H2X DGX sing 181 n n C2X H2XA DGX sing 182 n n C2Y H2Y DGX sing 183 n n C2Y H2YA DGX sing 184 n n C2Z H2Z DGX sing 185 n n C2Z H2ZA DGX sing 186 n n C3X H3X DGX sing 187 n n O3X HO3X DGX sing 188 n n C3Y H3Y DGX sing 189 n n O3Y HO3Y DGX sing 190 n n C3Z H3Z DGX sing 191 n n O3Z HO3Z DGX sing 192 n n C4X H4X DGX sing 193 n n C4Y H4Y DGX sing 194 n n C4Z H4Z DGX sing 195 n n O4Z HO4Z DGX sing 196 n n C5X H5X DGX sing 197 n n C5Y H5Y DGX sing 198 n n C5Z H5Z DGX sing 199 n n C6X H6X DGX sing 200 n n C6X H6XA DGX sing 201 n n C6X H6XB DGX sing 202 n n C6Y H6Y DGX sing 203 n n C6Y H6YA DGX sing 204 n n C6Y H6YB DGX sing 205 n n C6Z H6Z DGX sing 206 n n C6Z H6ZA DGX sing 207 n n C6Z H6ZB DGX sing 208 n n # _atom_sites.entry_id 3B0W _atom_sites.fract_transf_matrix[1][1] 0.01013 _atom_sites.fract_transf_matrix[1][2] 0.005849 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DGX A 1 1 1 DGX DGX . D 2 DGX B 1 1 1 DGX DGX . E 3 HOH A 1 3 3 HOH HOH . E 3 HOH A 2 4 4 HOH HOH . E 3 HOH A 3 9 9 HOH HOH . E 3 HOH A 4 11 11 HOH HOH . E 3 HOH A 5 12 12 HOH HOH . E 3 HOH A 6 13 13 HOH HOH . E 3 HOH A 7 15 15 HOH HOH . E 3 HOH A 8 17 17 HOH HOH . E 3 HOH A 9 18 18 HOH HOH . E 3 HOH A 10 19 19 HOH HOH . E 3 HOH A 11 20 20 HOH HOH . E 3 HOH A 12 23 23 HOH HOH . E 3 HOH A 13 24 24 HOH HOH . E 3 HOH A 14 30 30 HOH HOH . E 3 HOH A 15 31 31 HOH HOH . E 3 HOH A 16 32 32 HOH HOH . E 3 HOH A 17 33 33 HOH HOH . E 3 HOH A 18 34 34 HOH HOH . E 3 HOH A 19 37 37 HOH HOH . E 3 HOH A 20 41 41 HOH HOH . E 3 HOH A 21 42 42 HOH HOH . E 3 HOH A 22 45 45 HOH HOH . E 3 HOH A 23 48 48 HOH HOH . E 3 HOH A 24 50 50 HOH HOH . E 3 HOH A 25 51 51 HOH HOH . E 3 HOH A 26 52 52 HOH HOH . E 3 HOH A 27 53 53 HOH HOH . E 3 HOH A 28 54 54 HOH HOH . E 3 HOH A 29 55 55 HOH HOH . E 3 HOH A 30 57 57 HOH HOH . E 3 HOH A 31 58 58 HOH HOH . E 3 HOH A 32 61 61 HOH HOH . E 3 HOH A 33 62 62 HOH HOH . E 3 HOH A 34 65 65 HOH HOH . E 3 HOH A 35 67 67 HOH HOH . E 3 HOH A 36 69 69 HOH HOH . E 3 HOH A 37 70 70 HOH HOH . E 3 HOH A 38 71 71 HOH HOH . E 3 HOH A 39 508 1 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 5 5 HOH HOH . F 3 HOH B 3 6 6 HOH HOH . F 3 HOH B 4 7 7 HOH HOH . F 3 HOH B 5 8 8 HOH HOH . F 3 HOH B 6 10 10 HOH HOH . F 3 HOH B 7 14 14 HOH HOH . F 3 HOH B 8 16 16 HOH HOH . F 3 HOH B 9 21 21 HOH HOH . F 3 HOH B 10 22 22 HOH HOH . F 3 HOH B 11 25 25 HOH HOH . F 3 HOH B 12 26 26 HOH HOH . F 3 HOH B 13 27 27 HOH HOH . F 3 HOH B 14 28 28 HOH HOH . F 3 HOH B 15 29 29 HOH HOH . F 3 HOH B 16 35 35 HOH HOH . F 3 HOH B 17 36 36 HOH HOH . F 3 HOH B 18 38 38 HOH HOH . F 3 HOH B 19 39 39 HOH HOH . F 3 HOH B 20 40 40 HOH HOH . F 3 HOH B 21 43 43 HOH HOH . F 3 HOH B 22 44 44 HOH HOH . F 3 HOH B 23 46 46 HOH HOH . F 3 HOH B 24 47 47 HOH HOH . F 3 HOH B 25 49 49 HOH HOH . F 3 HOH B 26 56 56 HOH HOH . F 3 HOH B 27 59 59 HOH HOH . F 3 HOH B 28 60 60 HOH HOH . F 3 HOH B 29 63 63 HOH HOH . F 3 HOH B 30 64 64 HOH HOH . F 3 HOH B 31 66 66 HOH HOH . F 3 HOH B 32 68 68 HOH HOH . F 3 HOH B 33 72 72 HOH HOH . F 3 HOH B 34 73 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DGX . . . C 2 25.488 18.997 -1.482 1 45.55 ? C1 DGX 1 A 1 HETATM 2 C C2 DGX . . . C 2 25.504 19.436 -2.961 1 44.78 ? C2 DGX 1 A 1 HETATM 3 C C3 DGX . . . C 2 26.586 20.494 -3.203 1 44.45 ? C3 DGX 1 A 1 HETATM 4 O O3 DGX . . . C 2 27.872 19.92 -2.954 1 47.85 ? O3 DGX 1 A 1 HETATM 5 C C4 DGX . . . C 2 26.341 21.699 -2.27 1 44.9 ? C4 DGX 1 A 1 HETATM 6 C C5 DGX . . . C 2 26.284 21.309 -0.768 1 44.49 ? C5 DGX 1 A 1 HETATM 7 C C6 DGX . . . C 2 25.978 22.568 0.085 1 43.94 ? C6 DGX 1 A 1 HETATM 8 C C7 DGX . . . C 2 24.533 23.07 -0.113 1 43.41 ? C7 DGX 1 A 1 HETATM 9 C C8 DGX . . . C 2 23.5 21.95 0.149 1 44.71 ? C8 DGX 1 A 1 HETATM 10 C C9 DGX . . . C 2 23.806 20.711 -0.739 1 43.8 ? C9 DGX 1 A 1 HETATM 11 C C10 DGX . . . C 2 25.238 20.185 -0.519 1 44.18 ? C10 DGX 1 A 1 HETATM 12 C C11 DGX . . . C 2 22.743 19.585 -0.568 1 43.73 ? C11 DGX 1 A 1 HETATM 13 C C12 DGX . . . C 2 21.363 20.15 -0.911 1 46.27 ? C12 DGX 1 A 1 HETATM 14 O O12 DGX . . . C 2 20.377 19.109 -0.893 1 45.75 ? O12 DGX 1 A 1 HETATM 15 C C13 DGX . . . C 2 20.974 21.303 0.06 1 46.71 ? C13 DGX 1 A 1 HETATM 16 C C14 DGX . . . C 2 22.046 22.437 0 1 45.48 ? C14 DGX 1 A 1 HETATM 17 O O14 DGX . . . C 2 21.8 23.424 1.006 1 43.04 ? O14 DGX 1 A 1 HETATM 18 C C15 DGX . . . C 2 21.739 23.145 -1.338 1 45.61 ? C15 DGX 1 A 1 HETATM 19 C C16 DGX . . . C 2 20.2 23.185 -1.386 1 46.4 ? C16 DGX 1 A 1 HETATM 20 C C17 DGX . . . C 2 19.702 21.964 -0.563 1 49.39 ? C17 DGX 1 A 1 HETATM 21 C C18 DGX . . . C 2 20.77 20.77 1.486 1 43.9 ? C18 DGX 1 A 1 HETATM 22 C C19 DGX . . . C 2 25.42 19.617 0.902 1 42.94 ? C19 DGX 1 A 1 HETATM 23 C C1X DGX . . . C 2 29.003 20.674 -3.418 1 50.92 ? C1X DGX 1 A 1 HETATM 24 C C1Y DGX . . . C 2 33.58 21.339 -6.077 1 71.73 ? C1Y DGX 1 A 1 HETATM 25 C C1Z DGX . . . C 2 38.67 19.795 -6.436 1 88.47 ? C1Z DGX 1 A 1 HETATM 26 C C20 DGX . . . C 2 18.612 22.429 0.385 1 53.63 ? C20 DGX 1 A 1 HETATM 27 C C21 DGX . . . C 2 17.307 21.719 0.713 1 56.25 ? C21 DGX 1 A 1 HETATM 28 O O21 DGX . . . C 2 16.527 22.659 1.524 1 57.26 ? O21 DGX 1 A 1 HETATM 29 C C22 DGX . . . C 2 18.581 23.579 1.05 1 55.31 ? C22 DGX 1 A 1 HETATM 30 C C23 DGX . . . C 2 17.336 23.69 1.814 1 57.83 ? C23 DGX 1 A 1 HETATM 31 O O23 DGX . . . C 2 17.077 24.61 2.575 1 61.21 ? O23 DGX 1 A 1 HETATM 32 C C2X DGX . . . C 2 30.28 20.007 -2.915 1 53.93 ? C2X DGX 1 A 1 HETATM 33 C C2Y DGX . . . C 2 34.739 22.343 -6.005 1 75.28 ? C2Y DGX 1 A 1 HETATM 34 C C2Z DGX . . . C 2 39.706 19.974 -7.562 1 89.98 ? C2Z DGX 1 A 1 HETATM 35 C C3X DGX . . . C 2 31.536 20.669 -3.517 1 57.33 ? C3X DGX 1 A 1 HETATM 36 O O3X DGX . . . C 2 31.764 21.965 -2.965 1 57.24 ? O3X DGX 1 A 1 HETATM 37 C C3Y DGX . . . C 2 35.91 21.788 -6.832 1 78.13 ? C3Y DGX 1 A 1 HETATM 38 O O3Y DGX . . . C 2 35.52 21.759 -8.211 1 77.56 ? O3Y DGX 1 A 1 HETATM 39 C C3Z DGX . . . C 2 41.084 20.35 -6.996 1 91.59 ? C3Z DGX 1 A 1 HETATM 40 O O3Z DGX . . . C 2 41.603 19.241 -6.251 1 92.13 ? O3Z DGX 1 A 1 HETATM 41 C C4X DGX . . . C 2 31.453 20.875 -5.036 1 59.8 ? C4X DGX 1 A 1 HETATM 42 O O4X DGX . . . C 2 32.456 21.848 -5.354 1 66.88 ? O4X DGX 1 A 1 HETATM 43 C C4Y DGX . . . C 2 36.295 20.381 -6.311 1 79.9 ? C4Y DGX 1 A 1 HETATM 44 O O4Y DGX . . . C 2 37.375 19.805 -7.069 1 84.58 ? O4Y DGX 1 A 1 HETATM 45 C C4Z DGX . . . C 2 40.964 21.598 -6.097 1 92.23 ? C4Z DGX 1 A 1 HETATM 46 O O4Z DGX . . . C 2 42.257 22.002 -5.617 1 93.42 ? O4Z DGX 1 A 1 HETATM 47 C C5X DGX . . . C 2 30.095 21.476 -5.432 1 57.09 ? C5X DGX 1 A 1 HETATM 48 O O5X DGX . . . C 2 29.037 20.71 -4.855 1 53.23 ? O5X DGX 1 A 1 HETATM 49 C C5Y DGX . . . C 2 35.056 19.465 -6.317 1 77.92 ? C5Y DGX 1 A 1 HETATM 50 O O5Y DGX . . . C 2 34.028 20.094 -5.534 1 73.76 ? O5Y DGX 1 A 1 HETATM 51 C C5Z DGX . . . C 2 40.017 21.284 -4.922 1 91.53 ? C5Z DGX 1 A 1 HETATM 52 O O5Z DGX . . . C 2 38.744 20.828 -5.418 1 90.34 ? O5Z DGX 1 A 1 HETATM 53 C C6X DGX . . . C 2 29.951 21.505 -6.954 1 56.58 ? C6X DGX 1 A 1 HETATM 54 C C6Y DGX . . . C 2 35.4 18.094 -5.727 1 78.12 ? C6Y DGX 1 A 1 HETATM 55 C C6Z DGX . . . C 2 39.81 22.549 -4.075 1 91.84 ? C6Z DGX 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 55 #