data_3B1V
#
_model_server_result.job_id            huiBGA_cdc1iQlsJ1-d61g 
_model_server_result.datetime_utc      '2024-12-04 04:13:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3b1v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":300}' 
#
_entry.id    3B1V 
#
_exptl.entry_id    3B1V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              655.343 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-O-(N-methylanthraniloyl)-beta:gamma-imidoguanosine-5'-triphosphate" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3B1V 
_cell.length_a            49.2 
_cell.length_b            82.7 
_cell.length_c            150.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3B1V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 17 A THR 15 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc2 A OG1 THR 37 A THR 35 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc3 E O HOH . A HOH 272 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc4 E O HOH . A HOH 273 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc5 B O1G GGM . A GGM 300 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc6 B O2B GGM . A GGM 300 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C18 H24 N7 O14 P3' 
_chem_comp.formula_weight    655.343 
_chem_comp.id                GGM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-O-(N-methylanthraniloyl)-beta:gamma-imidoguanosine-5'-triphosphate" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MANT-GMPPNP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 GGM sing 83 n n 
N1 C6 GGM sing 84 n n 
C2 N2 GGM sing 85 n n 
C2 N3 GGM doub 86 n n 
N3 C4 GGM sing 87 n n 
C4 C5 GGM doub 88 n y 
C4 N9 GGM sing 89 n y 
C5 C6 GGM sing 90 n n 
C5 N7 GGM sing 91 n y 
C6 O6 GGM doub 92 n n 
N7 C8 GGM doub 93 n y 
C8 N9 GGM sing 94 n y 
N9 C1' GGM sing 95 n n 
CA OA GGM doub 96 n n 
CA O3' GGM sing 97 n n 
CA CA1 GGM sing 98 n n 
PA O1A GGM doub 99 n n 
PA O2A GGM sing 100 n n 
PA O3A GGM sing 101 n n 
PA O5' GGM sing 102 n n 
PB O1B GGM sing 103 n n 
PB O2B GGM doub 104 n n 
PB O3A GGM sing 105 n n 
PB N3B GGM sing 106 n n 
PG O1G GGM doub 107 n n 
PG O2G GGM sing 108 n n 
PG N3B GGM sing 109 n n 
PG O3G GGM sing 110 n n 
C1' C2' GGM sing 111 n n 
C1' O4' GGM sing 112 n n 
C2' O2' GGM sing 113 n n 
C2' C3' GGM sing 114 n n 
C3' O3' GGM sing 115 n n 
C3' C4' GGM sing 116 n n 
C4' O4' GGM sing 117 n n 
C4' C5' GGM sing 118 n n 
C5' O5' GGM sing 119 n n 
CA1 CA2 GGM doub 120 n y 
CA1 CA6 GGM sing 121 n y 
NA1 CA2 GGM sing 122 n n 
NA1 CAM GGM sing 123 n n 
CA2 CA3 GGM sing 124 n y 
CA3 CA4 GGM doub 125 n y 
CA4 CA5 GGM sing 126 n y 
CA5 CA6 GGM doub 127 n y 
N1 HN1 GGM sing 128 n n 
N2 HN2 GGM sing 129 n n 
N2 HN2A GGM sing 130 n n 
C8 H8 GGM sing 131 n n 
C1' H1' GGM sing 132 n n 
O1B HO1B GGM sing 133 n n 
C2' H2' GGM sing 134 n n 
O2' HO2' GGM sing 135 n n 
O2A HO2A GGM sing 136 n n 
O2G HO2G GGM sing 137 n n 
C3' H3' GGM sing 138 n n 
N3B HN3B GGM sing 139 n n 
O3G HO3G GGM sing 140 n n 
C4' H4' GGM sing 141 n n 
C5' H5' GGM sing 142 n n 
C5' "H5'A" GGM sing 143 n n 
NA1 HNA1 GGM sing 144 n n 
CA3 HA3 GGM sing 145 n n 
CA4 HA4 GGM sing 146 n n 
CA5 HA5 GGM sing 147 n n 
CA6 HA6 GGM sing 148 n n 
CAM HAM GGM sing 149 n n 
CAM HAMA GGM sing 150 n n 
CAM HAMB GGM sing 151 n n 
#
_atom_sites.entry_id                     3B1V 
_atom_sites.fract_transf_matrix[1][1]    0.020325 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012092 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006627 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GGM A 1 300 300 GGM GGM . 
C 3 MG A 1 301 301 MG MG . 
D 4 CL A 1 302 302 CL CL . 
E 5 HOH A 1 271 1 HOH HOH . 
E 5 HOH A 2 272 2 HOH HOH . 
E 5 HOH A 3 273 3 HOH HOH . 
E 5 HOH A 4 274 4 HOH HOH . 
E 5 HOH A 5 275 5 HOH HOH . 
E 5 HOH A 6 276 6 HOH HOH . 
E 5 HOH A 7 277 7 HOH HOH . 
E 5 HOH A 8 278 8 HOH HOH . 
E 5 HOH A 9 279 9 HOH HOH . 
E 5 HOH A 10 280 10 HOH HOH . 
E 5 HOH A 11 281 11 HOH HOH . 
E 5 HOH A 12 282 12 HOH HOH . 
E 5 HOH A 13 283 13 HOH HOH . 
E 5 HOH A 14 284 14 HOH HOH . 
E 5 HOH A 15 285 15 HOH HOH . 
E 5 HOH A 16 286 16 HOH HOH . 
E 5 HOH A 17 287 17 HOH HOH . 
E 5 HOH A 18 288 18 HOH HOH . 
E 5 HOH A 19 289 19 HOH HOH . 
E 5 HOH A 20 290 20 HOH HOH . 
E 5 HOH A 21 291 21 HOH HOH . 
E 5 HOH A 22 292 22 HOH HOH . 
E 5 HOH A 23 293 23 HOH HOH . 
E 5 HOH A 24 294 24 HOH HOH . 
E 5 HOH A 25 295 25 HOH HOH . 
E 5 HOH A 26 296 26 HOH HOH . 
E 5 HOH A 27 297 27 HOH HOH . 
E 5 HOH A 28 298 28 HOH HOH . 
E 5 HOH A 29 299 29 HOH HOH . 
E 5 HOH A 30 303 30 HOH HOH . 
E 5 HOH A 31 304 31 HOH HOH . 
E 5 HOH A 32 305 32 HOH HOH . 
E 5 HOH A 33 306 33 HOH HOH . 
E 5 HOH A 34 307 34 HOH HOH . 
E 5 HOH A 35 308 35 HOH HOH . 
E 5 HOH A 36 309 36 HOH HOH . 
E 5 HOH A 37 310 37 HOH HOH . 
E 5 HOH A 38 311 38 HOH HOH . 
E 5 HOH A 39 312 39 HOH HOH . 
E 5 HOH A 40 313 40 HOH HOH . 
E 5 HOH A 41 314 41 HOH HOH . 
E 5 HOH A 42 315 42 HOH HOH . 
E 5 HOH A 43 316 43 HOH HOH . 
E 5 HOH A 44 317 44 HOH HOH . 
E 5 HOH A 45 318 45 HOH HOH . 
E 5 HOH A 46 319 46 HOH HOH . 
E 5 HOH A 47 320 47 HOH HOH . 
E 5 HOH A 48 321 48 HOH HOH . 
E 5 HOH A 49 322 49 HOH HOH . 
E 5 HOH A 50 323 50 HOH HOH . 
E 5 HOH A 51 324 51 HOH HOH . 
E 5 HOH A 52 325 52 HOH HOH . 
E 5 HOH A 53 326 53 HOH HOH . 
E 5 HOH A 54 327 54 HOH HOH . 
E 5 HOH A 55 328 55 HOH HOH . 
E 5 HOH A 56 329 56 HOH HOH . 
E 5 HOH A 57 330 57 HOH HOH . 
E 5 HOH A 58 331 58 HOH HOH . 
E 5 HOH A 59 332 59 HOH HOH . 
E 5 HOH A 60 333 60 HOH HOH . 
E 5 HOH A 61 334 61 HOH HOH . 
E 5 HOH A 62 335 62 HOH HOH . 
E 5 HOH A 63 336 63 HOH HOH . 
E 5 HOH A 64 337 64 HOH HOH . 
E 5 HOH A 65 338 65 HOH HOH . 
E 5 HOH A 66 339 66 HOH HOH . 
E 5 HOH A 67 340 67 HOH HOH . 
E 5 HOH A 68 341 68 HOH HOH . 
E 5 HOH A 69 342 69 HOH HOH . 
E 5 HOH A 70 343 70 HOH HOH . 
E 5 HOH A 71 344 71 HOH HOH . 
E 5 HOH A 72 345 72 HOH HOH . 
E 5 HOH A 73 346 73 HOH HOH . 
E 5 HOH A 74 347 74 HOH HOH . 
E 5 HOH A 75 348 75 HOH HOH . 
E 5 HOH A 76 349 76 HOH HOH . 
E 5 HOH A 77 350 77 HOH HOH . 
E 5 HOH A 78 351 78 HOH HOH . 
E 5 HOH A 79 352 79 HOH HOH . 
E 5 HOH A 80 353 80 HOH HOH . 
E 5 HOH A 81 354 81 HOH HOH . 
E 5 HOH A 82 355 82 HOH HOH . 
E 5 HOH A 83 356 83 HOH HOH . 
E 5 HOH A 84 357 84 HOH HOH . 
E 5 HOH A 85 358 85 HOH HOH . 
E 5 HOH A 86 359 86 HOH HOH . 
E 5 HOH A 87 360 87 HOH HOH . 
E 5 HOH A 88 361 88 HOH HOH . 
E 5 HOH A 89 362 89 HOH HOH . 
E 5 HOH A 90 363 90 HOH HOH . 
E 5 HOH A 91 364 91 HOH HOH . 
E 5 HOH A 92 365 92 HOH HOH . 
E 5 HOH A 93 366 93 HOH HOH . 
E 5 HOH A 94 367 94 HOH HOH . 
E 5 HOH A 95 368 95 HOH HOH . 
E 5 HOH A 96 369 96 HOH HOH . 
E 5 HOH A 97 370 97 HOH HOH . 
E 5 HOH A 98 371 98 HOH HOH . 
E 5 HOH A 99 372 99 HOH HOH . 
E 5 HOH A 100 373 100 HOH HOH . 
E 5 HOH A 101 374 101 HOH HOH . 
E 5 HOH A 102 375 102 HOH HOH . 
E 5 HOH A 103 376 103 HOH HOH . 
E 5 HOH A 104 377 104 HOH HOH . 
E 5 HOH A 105 378 105 HOH HOH . 
E 5 HOH A 106 379 106 HOH HOH . 
E 5 HOH A 107 380 107 HOH HOH . 
E 5 HOH A 108 381 108 HOH HOH . 
E 5 HOH A 109 382 109 HOH HOH . 
E 5 HOH A 110 383 110 HOH HOH . 
E 5 HOH A 111 384 111 HOH HOH . 
E 5 HOH A 112 385 112 HOH HOH . 
E 5 HOH A 113 386 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 GGM . . . B 2 6.007 29.682 33.12 1 36.03 ? N1 GGM 300 A 1 
HETATM 2 C C2 GGM . . . B 2 5.92 29.083 34.39 1 35.87 ? C2 GGM 300 A 1 
HETATM 3 N N2 GGM . . . B 2 6.287 29.753 35.495 1 34.4 ? N2 GGM 300 A 1 
HETATM 4 N N3 GGM . . . B 2 5.473 27.819 34.474 1 35.25 ? N3 GGM 300 A 1 
HETATM 5 C C4 GGM . . . B 2 5.116 27.119 33.368 1 35.03 ? C4 GGM 300 A 1 
HETATM 6 C C5 GGM . . . B 2 5.169 27.657 32.1 1 33.5 ? C5 GGM 300 A 1 
HETATM 7 C C6 GGM . . . B 2 5.629 28.96 31.969 1 34.61 ? C6 GGM 300 A 1 
HETATM 8 O O6 GGM . . . B 2 5.699 29.478 30.863 1 35.23 ? O6 GGM 300 A 1 
HETATM 9 N N7 GGM . . . B 2 4.738 26.717 31.243 1 32.28 ? N7 GGM 300 A 1 
HETATM 10 C C8 GGM . . . B 2 4.417 25.631 31.934 1 32.72 ? C8 GGM 300 A 1 
HETATM 11 N N9 GGM . . . B 2 4.641 25.885 33.226 1 32.96 ? N9 GGM 300 A 1 
HETATM 12 C CA GGM . . . B 2 3.799 24.29 37.392 0 26.84 ? CA GGM 300 A 1 
HETATM 13 O OA GGM . . . B 2 2.715 24.616 38.564 0 26.84 ? OA GGM 300 A 1 
HETATM 14 P PA GGM . . . B 2 3.561 20.837 31.693 1 26.05 ? PA GGM 300 A 1 
HETATM 15 P PB GGM . . . B 2 5.242 19.168 29.98 1 23.22 ? PB GGM 300 A 1 
HETATM 16 P PG GGM . . . B 2 5.674 16.293 30.339 1 24.78 ? PG GGM 300 A 1 
HETATM 17 C C1' GGM . . . B 2 4.49 25.065 34.403 1 33.18 ? C1' GGM 300 A 1 
HETATM 18 O O1A GGM . . . B 2 2.733 21.557 30.721 1 23.77 ? O1A GGM 300 A 1 
HETATM 19 O O1B GGM . . . B 2 6.407 19.619 29.128 1 24.01 ? O1B GGM 300 A 1 
HETATM 20 O O1G GGM . . . B 2 4.252 16.005 30.008 1 22.79 ? O1G GGM 300 A 1 
HETATM 21 C C2' GGM . . . B 2 3.317 24.225 34.671 1 33.38 ? C2' GGM 300 A 1 
HETATM 22 O O2' GGM . . . B 2 2.252 25.01 35.298 1 34.97 ? O2' GGM 300 A 1 
HETATM 23 O O2A GGM . . . B 2 2.965 19.672 32.392 1 24.71 ? O2A GGM 300 A 1 
HETATM 24 O O2B GGM . . . B 2 3.97 18.859 29.279 1 22.51 ? O2B GGM 300 A 1 
HETATM 25 O O2G GGM . . . B 2 6.67 16.169 29.06 1 25.75 ? O2G GGM 300 A 1 
HETATM 26 C C3' GGM . . . B 2 3.405 22.908 35.267 1 31.06 ? C3' GGM 300 A 1 
HETATM 27 O O3' GGM . . . B 2 3.381 23.16 36.706 1 34.8 ? O3' GGM 300 A 1 
HETATM 28 O O3A GGM . . . B 2 5.03 20.347 31.052 1 24.06 ? O3A GGM 300 A 1 
HETATM 29 N N3B GGM . . . B 2 5.674 17.866 30.944 1 22.52 ? N3B GGM 300 A 1 
HETATM 30 O O3G GGM . . . B 2 6.166 15.29 31.467 1 27.01 ? O3G GGM 300 A 1 
HETATM 31 C C4' GGM . . . B 2 4.891 22.685 34.819 1 28.6 ? C4' GGM 300 A 1 
HETATM 32 O O4' GGM . . . B 2 5.486 23.969 34.36 1 29.52 ? O4' GGM 300 A 1 
HETATM 33 C C5' GGM . . . B 2 5.08 21.721 33.646 1 24.43 ? C5' GGM 300 A 1 
HETATM 34 O O5' GGM . . . B 2 4.072 21.943 32.684 1 23.7 ? O5' GGM 300 A 1 
HETATM 35 C CA1 GGM . . . B 2 5.146 25.103 37.498 0 26.84 ? CA1 GGM 300 A 1 
HETATM 36 N NA1 GGM . . . B 2 4.024 27.24 37.332 0 26.84 ? NA1 GGM 300 A 1 
HETATM 37 C CA2 GGM . . . B 2 5.164 26.53 37.463 0 26.84 ? CA2 GGM 300 A 1 
HETATM 38 C CA3 GGM . . . B 2 6.401 27.215 37.56 0 26.84 ? CA3 GGM 300 A 1 
HETATM 39 C CA4 GGM . . . B 2 7.609 26.506 37.687 0 26.84 ? CA4 GGM 300 A 1 
HETATM 40 C CA5 GGM . . . B 2 7.585 25.1 37.723 0 26.84 ? CA5 GGM 300 A 1 
HETATM 41 C CA6 GGM . . . B 2 6.363 24.411 37.634 0 26.84 ? CA6 GGM 300 A 1 
HETATM 42 C CAM GGM . . . B 2 3.745 28.465 38.14 0 26.84 ? CAM GGM 300 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           42 
#