data_3B1X # _model_server_result.job_id 4UxRH9IEh-c6sNgJRmmqyw _model_server_result.datetime_utc '2024-10-14 07:31:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3B1X # _exptl.entry_id 3B1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B1X _cell.length_a 48.7 _cell.length_b 74.4 _cell.length_c 156.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 15 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc2 A OG1 THR 37 A THR 35 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 G O HOH . A HOH 275 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 G O HOH . A HOH 276 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 C O2B GNP . A GNP 300 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc6 C O3G GNP . A GNP 300 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 B OG1 THR 17 B THR 15 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc8 B OG1 THR 37 B THR 35 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc9 H O HOH . B HOH 273 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc10 H O HOH . B HOH 274 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc11 E O2B GNP . B GNP 300 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc12 E O3G GNP . B GNP 300 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3B1X _atom_sites.fract_transf_matrix[1][1] 0.020549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNP A 1 300 300 GNP GNP . D 3 MG A 1 301 301 MG MG . E 2 GNP B 1 300 300 GNP GNP . F 3 MG B 1 301 301 MG MG . G 4 HOH A 1 271 1 HOH HOH . G 4 HOH A 2 272 2 HOH HOH . G 4 HOH A 3 273 3 HOH HOH . G 4 HOH A 4 274 4 HOH HOH . G 4 HOH A 5 275 5 HOH HOH . G 4 HOH A 6 276 6 HOH HOH . G 4 HOH A 7 277 10 HOH HOH . G 4 HOH A 8 278 11 HOH HOH . G 4 HOH A 9 279 12 HOH HOH . G 4 HOH A 10 280 13 HOH HOH . G 4 HOH A 11 281 14 HOH HOH . G 4 HOH A 12 282 18 HOH HOH . G 4 HOH A 13 283 19 HOH HOH . G 4 HOH A 14 284 22 HOH HOH . G 4 HOH A 15 285 23 HOH HOH . G 4 HOH A 16 286 24 HOH HOH . G 4 HOH A 17 287 25 HOH HOH . G 4 HOH A 18 288 26 HOH HOH . G 4 HOH A 19 289 27 HOH HOH . G 4 HOH A 20 290 29 HOH HOH . G 4 HOH A 21 291 30 HOH HOH . G 4 HOH A 22 292 31 HOH HOH . G 4 HOH A 23 293 33 HOH HOH . G 4 HOH A 24 294 34 HOH HOH . G 4 HOH A 25 295 36 HOH HOH . G 4 HOH A 26 296 37 HOH HOH . G 4 HOH A 27 297 50 HOH HOH . G 4 HOH A 28 298 51 HOH HOH . H 4 HOH B 1 271 7 HOH HOH . H 4 HOH B 2 272 8 HOH HOH . H 4 HOH B 3 273 9 HOH HOH . H 4 HOH B 4 274 15 HOH HOH . H 4 HOH B 5 275 16 HOH HOH . H 4 HOH B 6 276 17 HOH HOH . H 4 HOH B 7 277 20 HOH HOH . H 4 HOH B 8 278 21 HOH HOH . H 4 HOH B 9 279 28 HOH HOH . H 4 HOH B 10 280 32 HOH HOH . H 4 HOH B 11 281 35 HOH HOH . H 4 HOH B 12 282 38 HOH HOH . H 4 HOH B 13 283 39 HOH HOH . H 4 HOH B 14 284 40 HOH HOH . H 4 HOH B 15 285 41 HOH HOH . H 4 HOH B 16 286 42 HOH HOH . H 4 HOH B 17 287 43 HOH HOH . H 4 HOH B 18 288 44 HOH HOH . H 4 HOH B 19 289 45 HOH HOH . H 4 HOH B 20 290 46 HOH HOH . H 4 HOH B 21 291 47 HOH HOH . H 4 HOH B 22 292 48 HOH HOH . H 4 HOH B 23 293 49 HOH HOH . H 4 HOH B 24 294 52 HOH HOH . H 4 HOH B 25 295 53 HOH HOH . H 4 HOH B 26 296 54 HOH HOH . H 4 HOH B 27 297 55 HOH HOH . H 4 HOH B 28 298 56 HOH HOH . H 4 HOH B 29 299 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 2 5.821 13.702 -33.684 1 18.17 ? PG GNP 300 A 1 HETATM 2 O O1G GNP . . . C 2 4.986 13.882 -32.472 1 19.09 ? O1G GNP 300 A 1 HETATM 3 O O2G GNP . . . C 2 5.361 12.399 -34.511 1 18.14 ? O2G GNP 300 A 1 HETATM 4 O O3G GNP . . . C 2 7.35 13.367 -33.336 1 20.24 ? O3G GNP 300 A 1 HETATM 5 N N3B GNP . . . C 2 5.84 14.954 -34.69 1 18.26 ? N3B GNP 300 A 1 HETATM 6 P PB GNP . . . C 2 6.246 16.37 -33.983 1 19 ? PB GNP 300 A 1 HETATM 7 O O1B GNP . . . C 2 5.199 16.846 -33.037 1 20.97 ? O1B GNP 300 A 1 HETATM 8 O O2B GNP . . . C 2 7.651 16.161 -33.213 1 19.34 ? O2B GNP 300 A 1 HETATM 9 O O3A GNP . . . C 2 6.423 17.431 -35.176 1 20.49 ? O3A GNP 300 A 1 HETATM 10 P PA GNP . . . C 2 7.822 17.941 -35.834 1 20.29 ? PA GNP 300 A 1 HETATM 11 O O1A GNP . . . C 2 8.682 18.631 -34.84 1 20.6 ? O1A GNP 300 A 1 HETATM 12 O O2A GNP . . . C 2 8.54 16.613 -36.418 1 19.13 ? O2A GNP 300 A 1 HETATM 13 O O5' GNP . . . C 2 7.343 18.849 -37.035 1 20.11 ? O5' GNP 300 A 1 HETATM 14 C C5' GNP . . . C 2 6.454 18.322 -38.04 1 20.32 ? C5' GNP 300 A 1 HETATM 15 C C4' GNP . . . C 2 6.546 19.106 -39.388 1 19.21 ? C4' GNP 300 A 1 HETATM 16 O O4' GNP . . . C 2 5.958 20.417 -39.195 1 17.85 ? O4' GNP 300 A 1 HETATM 17 C C3' GNP . . . C 2 7.989 19.333 -39.863 1 18.98 ? C3' GNP 300 A 1 HETATM 18 O O3' GNP . . . C 2 8.044 19.225 -41.287 1 19.29 ? O3' GNP 300 A 1 HETATM 19 C C2' GNP . . . C 2 8.289 20.76 -39.409 1 19.77 ? C2' GNP 300 A 1 HETATM 20 O O2' GNP . . . C 2 9.268 21.354 -40.262 1 20.9 ? O2' GNP 300 A 1 HETATM 21 C C1' GNP . . . C 2 6.916 21.426 -39.566 1 19.94 ? C1' GNP 300 A 1 HETATM 22 N N9 GNP . . . C 2 6.681 22.544 -38.625 1 21.1 ? N9 GNP 300 A 1 HETATM 23 C C8 GNP . . . C 2 6.866 22.53 -37.299 1 21.29 ? C8 GNP 300 A 1 HETATM 24 N N7 GNP . . . C 2 6.547 23.718 -36.789 1 20.86 ? N7 GNP 300 A 1 HETATM 25 C C5 GNP . . . C 2 6.155 24.5 -37.792 1 22.07 ? C5 GNP 300 A 1 HETATM 26 C C6 GNP . . . C 2 5.716 25.824 -37.851 1 22.28 ? C6 GNP 300 A 1 HETATM 27 O O6 GNP . . . C 2 5.627 26.506 -36.833 1 22.86 ? O6 GNP 300 A 1 HETATM 28 N N1 GNP . . . C 2 5.365 26.37 -39.093 1 22.09 ? N1 GNP 300 A 1 HETATM 29 C C2 GNP . . . C 2 5.47 25.569 -40.242 1 22.39 ? C2 GNP 300 A 1 HETATM 30 N N2 GNP . . . C 2 5.145 26.08 -41.421 1 22.16 ? N2 GNP 300 A 1 HETATM 31 N N3 GNP . . . C 2 5.896 24.292 -40.153 1 22.12 ? N3 GNP 300 A 1 HETATM 32 C C4 GNP . . . C 2 6.237 23.75 -38.966 1 21.76 ? C4 GNP 300 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 596 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #