data_3B29 # _model_server_result.job_id Xi8_TQ2H-C9V6erqQQYiTw _model_server_result.datetime_utc '2024-11-26 17:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":209}' # _entry.id 3B29 # _exptl.entry_id 3B29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 573.576 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'dodecyl 4-O-alpha-D-glucopyranosyl-1-seleno-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B29 _cell.length_a 168.594 _cell.length_b 168.594 _cell.length_c 168.594 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 24_654 -y+1,-z+1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 168.594 84.297 -84.297 3 'crystal symmetry operation' 30_565 z+1/2,-x+1,-y+1/2 0 0 1 -1 0 0 0 -1 0 84.297 168.594 84.297 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C24 H46 O10 Se' _chem_comp.formula_weight 573.576 _chem_comp.id LSM _chem_comp.mon_nstd_flag . _chem_comp.name 'dodecyl 4-O-alpha-D-glucopyranosyl-1-seleno-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DODECYL-BETA-D-SELENOMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SE C1 LSM sing 230 n n SE C1' LSM sing 231 n n C1 C2 LSM sing 232 n n C1 H1 LSM sing 233 n n C1 H1A LSM sing 234 n n C2 C3 LSM sing 235 n n C2 H2 LSM sing 236 n n C2 H2A LSM sing 237 n n C3 C4 LSM sing 238 n n C3 H3 LSM sing 239 n n C3 H3A LSM sing 240 n n C4 C5 LSM sing 241 n n C4 H4 LSM sing 242 n n C4 H4A LSM sing 243 n n C5 C6 LSM sing 244 n n C5 H5 LSM sing 245 n n C5 H5A LSM sing 246 n n C6 C7 LSM sing 247 n n C6 H6 LSM sing 248 n n C6 H6A LSM sing 249 n n C7 C8 LSM sing 250 n n C7 H7 LSM sing 251 n n C7 H7A LSM sing 252 n n C8 C9 LSM sing 253 n n C8 H8 LSM sing 254 n n C8 H8A LSM sing 255 n n C9 H9 LSM sing 256 n n C9 H9A LSM sing 257 n n C1' C2' LSM sing 258 n n C1' O5' LSM sing 259 n n C1' H1' LSM sing 260 n n C1B O1B LSM sing 261 n n C1B C2B LSM sing 262 n n C1B O5B LSM sing 263 n n C1B H1B LSM sing 264 n n O1B C4' LSM sing 265 n n C2' O2' LSM sing 266 n n C2' C3' LSM sing 267 n n C2' H2' LSM sing 268 n n O2' HO2' LSM sing 269 n n C2B O2B LSM sing 270 n n C2B C3B LSM sing 271 n n C2B H2B LSM sing 272 n n O2B HO2B LSM sing 273 n n C3' O3' LSM sing 274 n n C3' C4' LSM sing 275 n n C3' H3' LSM sing 276 n n O3' HO3' LSM sing 277 n n C3B O3B LSM sing 278 n n C3B C4B LSM sing 279 n n C3B H3B LSM sing 280 n n O3B HO3B LSM sing 281 n n C4' C5' LSM sing 282 n n C4' H4' LSM sing 283 n n O4B C4B LSM sing 284 n n O4B HO4B LSM sing 285 n n C4B C5B LSM sing 286 n n C4B H4B LSM sing 287 n n C5' O5' LSM sing 288 n n C5' C6' LSM sing 289 n n C5' H5' LSM sing 290 n n C5B O5B LSM sing 291 n n C5B C6B LSM sing 292 n n C5B H5B LSM sing 293 n n C6' O6' LSM sing 294 n n C6' H6' LSM sing 295 n n C6' "H6'A" LSM sing 296 n n O6' HO6' LSM sing 297 n n C6B O6B LSM sing 298 n n C6B H6B LSM sing 299 n n C6B H6BA LSM sing 300 n n O6B HO6B LSM sing 301 n n C9 C10 LSM sing 302 n n C10 C11 LSM sing 303 n n C11 C12 LSM sing 304 n n C10 H10 LSM sing 305 n n C10 H10A LSM sing 306 n n C11 H11 LSM sing 307 n n C11 H11A LSM sing 308 n n C12 H12 LSM sing 309 n n C12 H12A LSM sing 310 n n C12 H12B LSM sing 311 n n # _atom_sites.entry_id 3B29 _atom_sites.fract_transf_matrix[1][1] 0.005931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 201 201 GSH GTT . C 3 SO4 A 1 202 202 SO4 SO4 . D 4 LSM A 1 203 203 LSM LSM . E 4 LSM A 1 207 207 LSM LSM . F 4 LSM A 1 208 208 LSM LSM . G 4 LSM A 1 209 209 LSM LSM . H 4 LSM A 1 210 210 LSM LSM . I 5 HOH A 1 204 204 HOH HOH . I 5 HOH A 2 205 205 HOH HOH . I 5 HOH A 3 206 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SE SE LSM . . . G 4 82.515 61.27 6.73 1 68.53 ? SE LSM 209 A 1 HETATM 2 C C1 LSM . . . G 4 84.301 60.831 6.08 1 63.55 ? C1 LSM 209 A 1 HETATM 3 C C2 LSM . . . G 4 84.958 59.861 7.066 1 58.89 ? C2 LSM 209 A 1 HETATM 4 C C3 LSM . . . G 4 83.994 58.741 7.463 1 54.2 ? C3 LSM 209 A 1 HETATM 5 C C4 LSM . . . G 4 84.712 57.391 7.521 1 51.74 ? C4 LSM 209 A 1 HETATM 6 C C5 LSM . . . G 4 83.779 56.249 7.111 1 49.35 ? C5 LSM 209 A 1 HETATM 7 C C6 LSM . . . G 4 84.578 55.02 6.67 1 48.26 ? C6 LSM 209 A 1 HETATM 8 C C7 LSM . . . G 4 84.104 54.516 5.303 1 48.91 ? C7 LSM 209 A 1 HETATM 9 C C8 LSM . . . G 4 85.18 53.665 4.619 1 48.84 ? C8 LSM 209 A 1 HETATM 10 C C9 LSM . . . G 4 85.102 53.792 3.094 1 46.62 ? C9 LSM 209 A 1 HETATM 11 C C1' LSM . . . G 4 81.805 62.192 5.155 1 70.39 ? C1' LSM 209 A 1 HETATM 12 C C1B LSM . . . G 4 82.346 64.565 0.601 1 76.55 ? C1B LSM 209 A 1 HETATM 13 O O1B LSM . . . G 4 81.442 63.675 1.274 1 74.67 ? O1B LSM 209 A 1 HETATM 14 C C2' LSM . . . G 4 82.59 63.486 4.897 1 71.1 ? C2' LSM 209 A 1 HETATM 15 O O2' LSM . . . G 4 82.329 64.417 5.953 1 69.85 ? O2' LSM 209 A 1 HETATM 16 C C2B LSM . . . G 4 81.595 65.823 0.139 1 78.02 ? C2B LSM 209 A 1 HETATM 17 O O2B LSM . . . G 4 80.828 66.352 1.226 1 77.7 ? O2B LSM 209 A 1 HETATM 18 C C3' LSM . . . G 4 82.213 64.133 3.556 1 72.08 ? C3' LSM 209 A 1 HETATM 19 O O3' LSM . . . G 4 83.21 65.099 3.207 1 71.52 ? O3' LSM 209 A 1 HETATM 20 C C3B LSM . . . G 4 80.667 65.521 -1.041 1 79.21 ? C3B LSM 209 A 1 HETATM 21 O O3B LSM . . . G 4 80.193 66.747 -1.604 1 80.02 ? O3B LSM 209 A 1 HETATM 22 C C4' LSM . . . G 4 82.08 63.099 2.429 1 72.75 ? C4' LSM 209 A 1 HETATM 23 O O4B LSM . . . G 4 80.476 64.331 -3.141 1 81.38 ? O4B LSM 209 A 1 HETATM 24 C C4B LSM . . . G 4 81.397 64.712 -2.114 1 79.83 ? C4B LSM 209 A 1 HETATM 25 C C5' LSM . . . G 4 81.235 61.926 2.898 1 71.78 ? C5' LSM 209 A 1 HETATM 26 O O5' LSM . . . G 4 81.881 61.311 4.019 1 71.54 ? O5' LSM 209 A 1 HETATM 27 C C5B LSM . . . G 4 82.038 63.467 -1.497 1 78.88 ? C5B LSM 209 A 1 HETATM 28 O O5B LSM . . . G 4 82.984 63.89 -0.505 1 77.56 ? O5B LSM 209 A 1 HETATM 29 C C6' LSM . . . G 4 81.088 60.911 1.762 1 71.52 ? C6' LSM 209 A 1 HETATM 30 O O6' LSM . . . G 4 79.97 60.059 2.023 1 70.58 ? O6' LSM 209 A 1 HETATM 31 C C6B LSM . . . G 4 82.77 62.654 -2.568 1 79.14 ? C6B LSM 209 A 1 HETATM 32 O O6B LSM . . . G 4 81.914 61.608 -3.048 1 80.12 ? O6B LSM 209 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #