data_3B2R # _model_server_result.job_id QHCueZAWo2h_OPcqR2llhg _model_server_result.datetime_utc '2024-11-15 05:01:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3B2R # _exptl.entry_id 3B2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B2R _cell.length_a 68.922 _cell.length_b 87.822 _cell.length_c 138.472 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H32 N6 O4 S' _chem_comp.formula_weight 488.603 _chem_comp.id VDN _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VARDENAFIL, LEVITRA' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 VDN sing 376 n n C1 H11 VDN sing 377 n n C1 H12 VDN sing 378 n n C1 H13 VDN sing 379 n n C2 O3 VDN sing 380 n n C2 H21 VDN sing 381 n n C2 H22 VDN sing 382 n n O3 C4 VDN sing 383 n n C4 C5 VDN doub 384 n y C4 C9 VDN sing 385 n y C5 C6 VDN sing 386 n y C5 H5 VDN sing 387 n n C6 C7 VDN doub 388 n y C6 H6 VDN sing 389 n n C7 C8 VDN sing 390 n y C7 S10 VDN sing 391 n n C8 C9 VDN doub 392 n y C8 H8 VDN sing 393 n n C9 C21 VDN sing 394 n y S10 O11 VDN doub 395 n n S10 O12 VDN doub 396 n n S10 N14 VDN sing 397 n n C13 C20 VDN sing 398 n n C13 H131 VDN sing 399 n n C13 H132 VDN sing 400 n n C13 H133 VDN sing 401 n n N14 C15 VDN sing 402 n n N14 C19 VDN sing 403 n n C15 C16 VDN sing 404 n n C15 H151 VDN sing 405 n n C15 H152 VDN sing 406 n n C16 N17 VDN sing 407 n n C16 H161 VDN sing 408 n n C16 H162 VDN sing 409 n n N17 C18 VDN sing 410 n n N17 C20 VDN sing 411 n n C18 C19 VDN sing 412 n n C18 H181 VDN sing 413 n n C18 H182 VDN sing 414 n n C19 H191 VDN sing 415 n n C19 H192 VDN sing 416 n n C20 H201 VDN sing 417 n n C20 H202 VDN sing 418 n n C21 N22 VDN doub 419 n y C21 N26 VDN sing 420 n y N22 C23 VDN sing 421 n y C23 C24 VDN sing 422 n y C23 O27 VDN doub 423 n n C24 N25 VDN sing 424 n y C24 C28 VDN doub 425 n y N25 N26 VDN sing 426 n y N25 C30 VDN sing 427 n y N26 H26 VDN sing 428 n n C28 N29 VDN sing 429 n y C28 C31 VDN sing 430 n n N29 C30 VDN doub 431 n y C30 C32 VDN sing 432 n n C31 H311 VDN sing 433 n n C31 H312 VDN sing 434 n n C31 H313 VDN sing 435 n n C32 C33 VDN sing 436 n n C32 H321 VDN sing 437 n n C32 H322 VDN sing 438 n n C33 C34 VDN sing 439 n n C33 H331 VDN sing 440 n n C33 H332 VDN sing 441 n n C34 H341 VDN sing 442 n n C34 H342 VDN sing 443 n n C34 H343 VDN sing 444 n n # _atom_sites.entry_id 3B2R _atom_sites.fract_transf_matrix[1][1] 0.014509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VDN A 1 1 1 VDN VDN . D 2 VDN B 1 1 1 VDN VDN . E 3 HOH A 1 861 3 HOH TIP . E 3 HOH A 2 862 4 HOH TIP . E 3 HOH A 3 863 5 HOH TIP . E 3 HOH A 4 864 6 HOH TIP . E 3 HOH A 5 865 8 HOH TIP . E 3 HOH A 6 866 9 HOH TIP . E 3 HOH A 7 867 11 HOH TIP . E 3 HOH A 8 868 12 HOH TIP . E 3 HOH A 9 869 13 HOH TIP . E 3 HOH A 10 870 14 HOH TIP . E 3 HOH A 11 871 16 HOH TIP . E 3 HOH A 12 872 17 HOH TIP . E 3 HOH A 13 873 19 HOH TIP . E 3 HOH A 14 874 20 HOH TIP . E 3 HOH A 15 875 21 HOH TIP . E 3 HOH A 16 876 22 HOH TIP . E 3 HOH A 17 877 24 HOH TIP . E 3 HOH A 18 878 25 HOH TIP . E 3 HOH A 19 879 27 HOH TIP . E 3 HOH A 20 880 28 HOH TIP . E 3 HOH A 21 881 29 HOH TIP . E 3 HOH A 22 882 30 HOH TIP . E 3 HOH A 23 883 33 HOH TIP . E 3 HOH A 24 884 34 HOH TIP . E 3 HOH A 25 885 35 HOH TIP . E 3 HOH A 26 886 38 HOH TIP . E 3 HOH A 27 887 41 HOH TIP . E 3 HOH A 28 888 42 HOH TIP . E 3 HOH A 29 889 43 HOH TIP . E 3 HOH A 30 890 44 HOH TIP . E 3 HOH A 31 891 47 HOH TIP . E 3 HOH A 32 892 48 HOH TIP . E 3 HOH A 33 893 50 HOH TIP . E 3 HOH A 34 894 52 HOH TIP . E 3 HOH A 35 895 53 HOH TIP . E 3 HOH A 36 896 57 HOH TIP . E 3 HOH A 37 897 58 HOH TIP . E 3 HOH A 38 898 59 HOH TIP . E 3 HOH A 39 899 60 HOH TIP . E 3 HOH A 40 900 61 HOH TIP . E 3 HOH A 41 901 62 HOH TIP . E 3 HOH A 42 902 64 HOH TIP . E 3 HOH A 43 903 66 HOH TIP . E 3 HOH A 44 904 67 HOH TIP . E 3 HOH A 45 905 68 HOH TIP . E 3 HOH A 46 906 71 HOH TIP . E 3 HOH A 47 907 73 HOH TIP . E 3 HOH A 48 908 74 HOH TIP . E 3 HOH A 49 909 76 HOH TIP . E 3 HOH A 50 910 77 HOH TIP . E 3 HOH A 51 911 78 HOH TIP . E 3 HOH A 52 912 79 HOH TIP . E 3 HOH A 53 913 82 HOH TIP . E 3 HOH A 54 914 83 HOH TIP . E 3 HOH A 55 915 84 HOH TIP . E 3 HOH A 56 916 86 HOH TIP . E 3 HOH A 57 917 88 HOH TIP . E 3 HOH A 58 918 89 HOH TIP . E 3 HOH A 59 919 92 HOH TIP . E 3 HOH A 60 920 95 HOH TIP . E 3 HOH A 61 921 96 HOH TIP . E 3 HOH A 62 922 97 HOH TIP . E 3 HOH A 63 923 99 HOH TIP . E 3 HOH A 64 924 101 HOH TIP . E 3 HOH A 65 925 104 HOH TIP . E 3 HOH A 66 926 105 HOH TIP . E 3 HOH A 67 927 106 HOH TIP . E 3 HOH A 68 928 107 HOH TIP . E 3 HOH A 69 929 109 HOH TIP . E 3 HOH A 70 930 110 HOH TIP . E 3 HOH A 71 931 111 HOH TIP . E 3 HOH A 72 932 112 HOH TIP . E 3 HOH A 73 933 116 HOH TIP . E 3 HOH A 74 934 119 HOH TIP . E 3 HOH A 75 935 120 HOH TIP . E 3 HOH A 76 936 122 HOH TIP . E 3 HOH A 77 937 123 HOH TIP . E 3 HOH A 78 938 124 HOH TIP . E 3 HOH A 79 939 127 HOH TIP . E 3 HOH A 80 940 129 HOH TIP . E 3 HOH A 81 941 130 HOH TIP . E 3 HOH A 82 942 131 HOH TIP . E 3 HOH A 83 943 132 HOH TIP . E 3 HOH A 84 944 133 HOH TIP . E 3 HOH A 85 945 134 HOH TIP . E 3 HOH A 86 946 136 HOH TIP . E 3 HOH A 87 947 141 HOH TIP . E 3 HOH A 88 948 142 HOH TIP . E 3 HOH A 89 949 143 HOH TIP . E 3 HOH A 90 950 144 HOH TIP . E 3 HOH A 91 951 145 HOH TIP . E 3 HOH A 92 952 148 HOH TIP . E 3 HOH A 93 953 149 HOH TIP . E 3 HOH A 94 954 150 HOH TIP . E 3 HOH A 95 955 151 HOH TIP . E 3 HOH A 96 956 152 HOH TIP . E 3 HOH A 97 957 153 HOH TIP . E 3 HOH A 98 958 154 HOH TIP . E 3 HOH A 99 959 155 HOH TIP . E 3 HOH A 100 960 156 HOH TIP . E 3 HOH A 101 961 157 HOH TIP . E 3 HOH A 102 962 158 HOH TIP . E 3 HOH A 103 963 160 HOH TIP . E 3 HOH A 104 964 163 HOH TIP . E 3 HOH A 105 965 165 HOH TIP . E 3 HOH A 106 966 168 HOH TIP . E 3 HOH A 107 967 169 HOH TIP . E 3 HOH A 108 968 170 HOH TIP . E 3 HOH A 109 969 173 HOH TIP . E 3 HOH A 110 970 176 HOH TIP . E 3 HOH A 111 971 177 HOH TIP . E 3 HOH A 112 972 178 HOH TIP . E 3 HOH A 113 973 179 HOH TIP . E 3 HOH A 114 974 182 HOH TIP . E 3 HOH A 115 975 183 HOH TIP . E 3 HOH A 116 976 146 HOH TIP . F 3 HOH B 1 861 1 HOH TIP . F 3 HOH B 2 862 2 HOH TIP . F 3 HOH B 3 863 7 HOH TIP . F 3 HOH B 4 864 10 HOH TIP . F 3 HOH B 5 865 15 HOH TIP . F 3 HOH B 6 866 18 HOH TIP . F 3 HOH B 7 867 23 HOH TIP . F 3 HOH B 8 868 26 HOH TIP . F 3 HOH B 9 869 31 HOH TIP . F 3 HOH B 10 870 32 HOH TIP . F 3 HOH B 11 871 36 HOH TIP . F 3 HOH B 12 872 37 HOH TIP . F 3 HOH B 13 873 39 HOH TIP . F 3 HOH B 14 874 40 HOH TIP . F 3 HOH B 15 875 45 HOH TIP . F 3 HOH B 16 876 46 HOH TIP . F 3 HOH B 17 877 49 HOH TIP . F 3 HOH B 18 878 51 HOH TIP . F 3 HOH B 19 879 54 HOH TIP . F 3 HOH B 20 880 55 HOH TIP . F 3 HOH B 21 881 56 HOH TIP . F 3 HOH B 22 882 63 HOH TIP . F 3 HOH B 23 883 65 HOH TIP . F 3 HOH B 24 884 69 HOH TIP . F 3 HOH B 25 885 70 HOH TIP . F 3 HOH B 26 886 72 HOH TIP . F 3 HOH B 27 887 75 HOH TIP . F 3 HOH B 28 888 80 HOH TIP . F 3 HOH B 29 889 81 HOH TIP . F 3 HOH B 30 890 85 HOH TIP . F 3 HOH B 31 891 87 HOH TIP . F 3 HOH B 32 892 90 HOH TIP . F 3 HOH B 33 893 91 HOH TIP . F 3 HOH B 34 894 93 HOH TIP . F 3 HOH B 35 895 94 HOH TIP . F 3 HOH B 36 896 98 HOH TIP . F 3 HOH B 37 897 100 HOH TIP . F 3 HOH B 38 898 102 HOH TIP . F 3 HOH B 39 899 103 HOH TIP . F 3 HOH B 40 900 108 HOH TIP . F 3 HOH B 41 901 113 HOH TIP . F 3 HOH B 42 902 114 HOH TIP . F 3 HOH B 43 903 115 HOH TIP . F 3 HOH B 44 904 117 HOH TIP . F 3 HOH B 45 905 118 HOH TIP . F 3 HOH B 46 906 121 HOH TIP . F 3 HOH B 47 907 125 HOH TIP . F 3 HOH B 48 908 126 HOH TIP . F 3 HOH B 49 909 128 HOH TIP . F 3 HOH B 50 910 135 HOH TIP . F 3 HOH B 51 911 137 HOH TIP . F 3 HOH B 52 912 138 HOH TIP . F 3 HOH B 53 913 139 HOH TIP . F 3 HOH B 54 914 140 HOH TIP . F 3 HOH B 55 915 147 HOH TIP . F 3 HOH B 56 916 159 HOH TIP . F 3 HOH B 57 917 161 HOH TIP . F 3 HOH B 58 918 162 HOH TIP . F 3 HOH B 59 919 164 HOH TIP . F 3 HOH B 60 920 166 HOH TIP . F 3 HOH B 61 921 167 HOH TIP . F 3 HOH B 62 922 171 HOH TIP . F 3 HOH B 63 923 172 HOH TIP . F 3 HOH B 64 924 174 HOH TIP . F 3 HOH B 65 925 175 HOH TIP . F 3 HOH B 66 926 180 HOH TIP . F 3 HOH B 67 927 181 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VDN . . . C 2 30.549 4.887 -0.159 1 31.73 ? C1 VDN 1 A 1 HETATM 2 C C2 VDN . . . C 2 29.616 4.147 -1.12 1 30.39 ? C2 VDN 1 A 1 HETATM 3 O O3 VDN . . . C 2 28.315 4.059 -0.52 1 33.79 ? O3 VDN 1 A 1 HETATM 4 C C4 VDN . . . C 2 27.391 3.578 -1.396 1 29.1 ? C4 VDN 1 A 1 HETATM 5 C C5 VDN . . . C 2 27.769 2.691 -2.397 1 29.55 ? C5 VDN 1 A 1 HETATM 6 C C6 VDN . . . C 2 26.809 2.163 -3.253 1 28.18 ? C6 VDN 1 A 1 HETATM 7 C C7 VDN . . . C 2 25.474 2.522 -3.105 1 32.53 ? C7 VDN 1 A 1 HETATM 8 C C8 VDN . . . C 2 25.095 3.412 -2.107 1 30.54 ? C8 VDN 1 A 1 HETATM 9 C C9 VDN . . . C 2 26.056 3.942 -1.252 1 30.28 ? C9 VDN 1 A 1 HETATM 10 S S10 VDN . . . C 2 24.295 1.839 -4.203 1 32.77 ? S10 VDN 1 A 1 HETATM 11 O O11 VDN . . . C 2 23.958 0.447 -3.761 1 32.32 ? O11 VDN 1 A 1 HETATM 12 O O12 VDN . . . C 2 23.051 2.675 -4.218 1 30.69 ? O12 VDN 1 A 1 HETATM 13 C C13 VDN . . . C 2 22.308 2.942 -9.971 1 42.07 ? C13 VDN 1 A 1 HETATM 14 N N14 VDN . . . C 2 24.991 1.809 -5.678 1 35.54 ? N14 VDN 1 A 1 HETATM 15 C C15 VDN . . . C 2 24.71 0.579 -6.435 1 34.77 ? C15 VDN 1 A 1 HETATM 16 C C16 VDN . . . C 2 23.393 0.652 -7.212 1 36.8 ? C16 VDN 1 A 1 HETATM 17 N N17 VDN . . . C 2 23.395 1.851 -8.06 1 37.05 ? N17 VDN 1 A 1 HETATM 18 C C18 VDN . . . C 2 23.398 3.017 -7.167 1 36.26 ? C18 VDN 1 A 1 HETATM 19 C C19 VDN . . . C 2 24.731 3.055 -6.417 1 33.69 ? C19 VDN 1 A 1 HETATM 20 C C20 VDN . . . C 2 22.182 1.866 -8.89 1 40.4 ? C20 VDN 1 A 1 HETATM 21 C C21 VDN . . . C 2 25.689 4.836 -0.251 1 30.46 ? C21 VDN 1 A 1 HETATM 22 N N22 VDN . . . C 2 26.353 6.064 -0.146 1 28.07 ? N22 VDN 1 A 1 HETATM 23 C C23 VDN . . . C 2 25.979 6.931 0.886 1 30.28 ? C23 VDN 1 A 1 HETATM 24 C C24 VDN . . . C 2 24.967 6.509 1.737 1 27.78 ? C24 VDN 1 A 1 HETATM 25 N N25 VDN . . . C 2 24.375 5.257 1.537 1 30.33 ? N25 VDN 1 A 1 HETATM 26 N N26 VDN . . . C 2 24.721 4.511 0.621 1 27.64 ? N26 VDN 1 A 1 HETATM 27 O O27 VDN . . . C 2 26.55 8.009 1.05 1 30.97 ? O27 VDN 1 A 1 HETATM 28 C C28 VDN . . . C 2 24.337 7.057 2.847 1 29.17 ? C28 VDN 1 A 1 HETATM 29 N N29 VDN . . . C 2 23.419 6.217 3.318 1 33.69 ? N29 VDN 1 A 1 HETATM 30 C C30 VDN . . . C 2 23.42 5.127 2.554 1 31.45 ? C30 VDN 1 A 1 HETATM 31 C C31 VDN . . . C 2 24.643 8.428 3.452 1 28.42 ? C31 VDN 1 A 1 HETATM 32 C C32 VDN . . . C 2 22.57 3.867 2.722 1 33.42 ? C32 VDN 1 A 1 HETATM 33 C C33 VDN . . . C 2 23.425 2.695 3.211 1 35.18 ? C33 VDN 1 A 1 HETATM 34 C C34 VDN . . . C 2 24.098 3.016 4.548 1 33.92 ? C34 VDN 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #