data_3B2W # _model_server_result.job_id FwNrM375bp3W6clof6-2rA _model_server_result.datetime_utc '2025-01-02 18:43:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 3B2W # _exptl.entry_id 3B2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 623.601 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[5-({[2-fluoro-3-(trifluoromethyl)phenyl]amino}carbonyl)-2-methylphenyl]-4-methoxy-2-[(4-piperazin-1-ylphenyl)amino]pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.35 _cell.angle_gamma 90 _cell.entry_id 3B2W _cell.length_a 45.18 _cell.length_b 75.19 _cell.length_c 47.11 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H29 F4 N7 O3' _chem_comp.formula_weight 623.601 _chem_comp.id 9NH _chem_comp.mon_nstd_flag . _chem_comp.name N-[5-({[2-fluoro-3-(trifluoromethyl)phenyl]amino}carbonyl)-2-methylphenyl]-4-methoxy-2-[(4-piperazin-1-ylphenyl)amino]pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C14 9NH sing 1 n n F2 C14 9NH sing 2 n n F3 C14 9NH sing 3 n n C14 C10 9NH sing 4 n n C10 C9 9NH doub 5 n y C10 C11 9NH sing 6 n y C9 C8 9NH sing 7 n y F4 C11 9NH sing 8 n n C11 C26 9NH doub 9 n y C8 C7 9NH doub 10 n y C26 C7 9NH sing 11 n y C26 N3 9NH sing 12 n n O2 C25 9NH doub 13 n n N3 C25 9NH sing 14 n n C25 C24 9NH sing 15 n n O1 C27 9NH doub 16 n n C17 N1 9NH doub 17 n y C17 C18 9NH sing 18 n y C24 C12 9NH doub 19 n y C24 C23 9NH sing 20 n y N1 C20 9NH sing 21 n y C12 C13 9NH sing 22 n y C27 C18 9NH sing 23 n n C27 N6 9NH sing 24 n n C23 C22 9NH doub 25 n y C18 C19 9NH doub 26 n y C20 N7 9NH sing 27 n n C20 N4 9NH doub 28 n y C13 N6 9NH sing 29 n n C13 C15 9NH doub 30 n y N7 C31 9NH sing 31 n n C22 C15 9NH sing 32 n y C19 N4 9NH sing 33 n y C19 O3 9NH sing 34 n n C15 C16 9NH sing 35 n n C31 C5 9NH doub 36 n y C31 C28 9NH sing 37 n y C5 C30 9NH sing 38 n y O3 C21 9NH sing 39 n n C28 C2 9NH doub 40 n y C30 C29 9NH doub 41 n y C2 C29 9NH sing 42 n y C29 N5 9NH sing 43 n n C4 N5 9NH sing 44 n n C4 C3 9NH sing 45 n n N5 C6 9NH sing 46 n n C3 N2 9NH sing 47 n n C6 C1 9NH sing 48 n n N2 C1 9NH sing 49 n n C1 H11 9NH sing 50 n n C1 H12 9NH sing 51 n n C2 H21 9NH sing 52 n n C3 H31 9NH sing 53 n n C3 H32 9NH sing 54 n n N6 H61N 9NH sing 55 n n C7 H71 9NH sing 56 n n C8 H81 9NH sing 57 n n C9 H91 9NH sing 58 n n C12 H121 9NH sing 59 n n C16 H161 9NH sing 60 n n C16 H162 9NH sing 61 n n C16 H163 9NH sing 62 n n C21 H211 9NH sing 63 n n C21 H212 9NH sing 64 n n C21 H213 9NH sing 65 n n C22 H221 9NH sing 66 n n C30 H301 9NH sing 67 n n C23 H231 9NH sing 68 n n N3 H31N 9NH sing 69 n n C17 H171 9NH sing 70 n n N7 H71N 9NH sing 71 n n C28 H281 9NH sing 72 n n C5 H51 9NH sing 73 n n N2 H21N 9NH sing 74 n n C4 H41 9NH sing 75 n n C4 H42 9NH sing 76 n n C6 H61 9NH sing 77 n n C6 H62 9NH sing 78 n n # _atom_sites.entry_id 3B2W _atom_sites.fract_transf_matrix[1][1] 0.022134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0091 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9NH A 1 601 1 9NH 9NH . C 3 HOH A 1 602 7 HOH HOH . C 3 HOH A 2 603 24 HOH HOH . C 3 HOH A 3 604 25 HOH HOH . C 3 HOH A 4 605 34 HOH HOH . C 3 HOH A 5 606 35 HOH HOH . C 3 HOH A 6 607 36 HOH HOH . C 3 HOH A 7 608 38 HOH HOH . C 3 HOH A 8 609 39 HOH HOH . C 3 HOH A 9 610 42 HOH HOH . C 3 HOH A 10 611 45 HOH HOH . C 3 HOH A 11 612 46 HOH HOH . C 3 HOH A 12 613 47 HOH HOH . C 3 HOH A 13 614 49 HOH HOH . C 3 HOH A 14 615 52 HOH HOH . C 3 HOH A 15 616 60 HOH HOH . C 3 HOH A 16 617 69 HOH HOH . C 3 HOH A 17 618 70 HOH HOH . C 3 HOH A 18 619 72 HOH HOH . C 3 HOH A 19 620 75 HOH HOH . C 3 HOH A 20 621 76 HOH HOH . C 3 HOH A 21 622 80 HOH HOH . C 3 HOH A 22 623 83 HOH HOH . C 3 HOH A 23 624 90 HOH HOH . C 3 HOH A 24 625 91 HOH HOH . C 3 HOH A 25 626 96 HOH HOH . C 3 HOH A 26 627 97 HOH HOH . C 3 HOH A 27 628 98 HOH HOH . C 3 HOH A 28 629 100 HOH HOH . C 3 HOH A 29 630 101 HOH HOH . C 3 HOH A 30 631 102 HOH HOH . C 3 HOH A 31 632 103 HOH HOH . C 3 HOH A 32 633 105 HOH HOH . C 3 HOH A 33 634 107 HOH HOH . C 3 HOH A 34 635 110 HOH HOH . C 3 HOH A 35 636 111 HOH HOH . C 3 HOH A 36 637 112 HOH HOH . C 3 HOH A 37 638 113 HOH HOH . C 3 HOH A 38 639 115 HOH HOH . C 3 HOH A 39 640 118 HOH HOH . C 3 HOH A 40 641 119 HOH HOH . C 3 HOH A 41 642 120 HOH HOH . C 3 HOH A 42 643 124 HOH HOH . C 3 HOH A 43 644 125 HOH HOH . C 3 HOH A 44 645 126 HOH HOH . C 3 HOH A 45 646 127 HOH HOH . C 3 HOH A 46 647 128 HOH HOH . C 3 HOH A 47 648 129 HOH HOH . C 3 HOH A 48 649 130 HOH HOH . C 3 HOH A 49 650 132 HOH HOH . C 3 HOH A 50 651 133 HOH HOH . C 3 HOH A 51 652 136 HOH HOH . C 3 HOH A 52 653 139 HOH HOH . C 3 HOH A 53 654 140 HOH HOH . C 3 HOH A 54 655 141 HOH HOH . C 3 HOH A 55 656 142 HOH HOH . C 3 HOH A 56 657 143 HOH HOH . C 3 HOH A 57 658 146 HOH HOH . C 3 HOH A 58 659 147 HOH HOH . C 3 HOH A 59 660 148 HOH HOH . C 3 HOH A 60 661 149 HOH HOH . C 3 HOH A 61 662 152 HOH HOH . C 3 HOH A 62 663 153 HOH HOH . C 3 HOH A 63 664 154 HOH HOH . C 3 HOH A 64 665 155 HOH HOH . C 3 HOH A 65 666 158 HOH HOH . C 3 HOH A 66 667 159 HOH HOH . C 3 HOH A 67 668 160 HOH HOH . C 3 HOH A 68 669 169 HOH HOH . C 3 HOH A 69 670 173 HOH HOH . C 3 HOH A 70 671 174 HOH HOH . C 3 HOH A 71 672 176 HOH HOH . C 3 HOH A 72 673 181 HOH HOH . C 3 HOH A 73 674 182 HOH HOH . C 3 HOH A 74 675 183 HOH HOH . C 3 HOH A 75 676 184 HOH HOH . C 3 HOH A 76 677 185 HOH HOH . C 3 HOH A 77 678 188 HOH HOH . C 3 HOH A 78 679 189 HOH HOH . C 3 HOH A 79 680 194 HOH HOH . C 3 HOH A 80 681 196 HOH HOH . C 3 HOH A 81 682 202 HOH HOH . C 3 HOH A 82 683 203 HOH HOH . C 3 HOH A 83 684 204 HOH HOH . C 3 HOH A 84 685 205 HOH HOH . C 3 HOH A 85 686 207 HOH HOH . C 3 HOH A 86 687 211 HOH HOH . C 3 HOH A 87 688 213 HOH HOH . C 3 HOH A 88 689 214 HOH HOH . C 3 HOH A 89 690 217 HOH HOH . C 3 HOH A 90 691 221 HOH HOH . C 3 HOH A 91 692 223 HOH HOH . C 3 HOH A 92 693 224 HOH HOH . C 3 HOH A 93 694 225 HOH HOH . C 3 HOH A 94 695 227 HOH HOH . C 3 HOH A 95 696 229 HOH HOH . C 3 HOH A 96 697 231 HOH HOH . C 3 HOH A 97 698 233 HOH HOH . C 3 HOH A 98 699 234 HOH HOH . C 3 HOH A 99 700 237 HOH HOH . C 3 HOH A 100 701 238 HOH HOH . C 3 HOH A 101 702 240 HOH HOH . C 3 HOH A 102 703 242 HOH HOH . C 3 HOH A 103 704 243 HOH HOH . C 3 HOH A 104 705 247 HOH HOH . C 3 HOH A 105 706 249 HOH HOH . C 3 HOH A 106 707 250 HOH HOH . C 3 HOH A 107 708 251 HOH HOH . C 3 HOH A 108 709 252 HOH HOH . C 3 HOH A 109 710 253 HOH HOH . C 3 HOH A 110 711 254 HOH HOH . C 3 HOH A 111 712 257 HOH HOH . C 3 HOH A 112 713 258 HOH HOH . C 3 HOH A 113 714 259 HOH HOH . C 3 HOH A 114 715 262 HOH HOH . C 3 HOH A 115 716 264 HOH HOH . C 3 HOH A 116 717 271 HOH HOH . C 3 HOH A 117 718 272 HOH HOH . C 3 HOH A 118 719 273 HOH HOH . C 3 HOH A 119 720 281 HOH HOH . C 3 HOH A 120 721 289 HOH HOH . C 3 HOH A 121 722 291 HOH HOH . C 3 HOH A 122 723 292 HOH HOH . C 3 HOH A 123 724 300 HOH HOH . C 3 HOH A 124 725 303 HOH HOH . C 3 HOH A 125 726 304 HOH HOH . C 3 HOH A 126 727 306 HOH HOH . C 3 HOH A 127 728 307 HOH HOH . C 3 HOH A 128 729 308 HOH HOH . C 3 HOH A 129 730 316 HOH HOH . C 3 HOH A 130 731 317 HOH HOH . C 3 HOH A 131 732 318 HOH HOH . C 3 HOH A 132 733 319 HOH HOH . C 3 HOH A 133 734 321 HOH HOH . C 3 HOH A 134 735 332 HOH HOH . C 3 HOH A 135 736 333 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9NH . . . B 2 19.758 3.541 19.82 1 29.79 ? C1 9NH 601 A 1 HETATM 2 C C2 9NH . . . B 2 17.938 1.407 16.456 1 20.7 ? C2 9NH 601 A 1 HETATM 3 C C3 9NH . . . B 2 20.913 4.81 18.149 1 30.3 ? C3 9NH 601 A 1 HETATM 4 N N6 9NH . . . B 2 14.751 -5.729 14.28 1 16.78 ? N6 9NH 601 A 1 HETATM 5 C C7 9NH . . . B 2 7.606 -8.744 11.319 1 19.77 ? C7 9NH 601 A 1 HETATM 6 C C8 9NH . . . B 2 6.561 -8.818 10.337 1 22.07 ? C8 9NH 601 A 1 HETATM 7 C C9 9NH . . . B 2 6.902 -8.77 8.942 1 22.34 ? C9 9NH 601 A 1 HETATM 8 C C10 9NH . . . B 2 8.274 -8.649 8.509 1 24.05 ? C10 9NH 601 A 1 HETATM 9 C C11 9NH . . . B 2 9.281 -8.582 9.552 1 21.27 ? C11 9NH 601 A 1 HETATM 10 C C12 9NH . . . B 2 12.829 -6.619 13.19 1 17.37 ? C12 9NH 601 A 1 HETATM 11 C C13 9NH . . . B 2 13.926 -6.788 14.071 1 16 ? C13 9NH 601 A 1 HETATM 12 C C14 9NH . . . B 2 8.68 -8.581 7.025 1 25.47 ? C14 9NH 601 A 1 HETATM 13 C C15 9NH . . . B 2 14.154 -8.049 14.732 1 17.62 ? C15 9NH 601 A 1 HETATM 14 C C16 9NH . . . B 2 15.339 -8.158 15.64 1 15.35 ? C16 9NH 601 A 1 HETATM 15 C C19 9NH . . . B 2 16.436 -3.486 14.709 1 15.67 ? C19 9NH 601 A 1 HETATM 16 C C20 9NH . . . B 2 18.324 -2.382 14.054 1 17.62 ? C20 9NH 601 A 1 HETATM 17 C C21 9NH . . . B 2 15.213 -2.522 16.489 1 14.2 ? C21 9NH 601 A 1 HETATM 18 C C22 9NH . . . B 2 13.295 -9.212 14.553 1 16.32 ? C22 9NH 601 A 1 HETATM 19 C C24 9NH . . . B 2 11.958 -7.751 12.984 1 19.66 ? C24 9NH 601 A 1 HETATM 20 C C27 9NH . . . B 2 15.814 -5.553 13.473 1 16.85 ? C27 9NH 601 A 1 HETATM 21 C C30 9NH . . . B 2 20.492 1.452 16.036 1 20.78 ? C30 9NH 601 A 1 HETATM 22 C C31 9NH . . . B 2 19.078 -0.221 14.933 1 18.87 ? C31 9NH 601 A 1 HETATM 23 C C23 9NH . . . B 2 12.175 -9.051 13.658 1 17.75 ? C23 9NH 601 A 1 HETATM 24 C C25 9NH . . . B 2 10.843 -7.534 12.017 1 18.52 ? C25 9NH 601 A 1 HETATM 25 N N3 9NH . . . B 2 9.916 -8.531 11.946 1 18.91 ? N3 9NH 601 A 1 HETATM 26 C C26 9NH . . . B 2 8.979 -8.624 10.948 1 20.89 ? C26 9NH 601 A 1 HETATM 27 F F1 9NH . . . B 2 7.623 -8.721 6.249 1 27.49 ? F1 9NH 601 A 1 HETATM 28 F F3 9NH . . . B 2 9.502 -9.604 6.767 1 27.88 ? F3 9NH 601 A 1 HETATM 29 F F2 9NH . . . B 2 9.29 -7.399 6.754 1 27.39 ? F2 9NH 601 A 1 HETATM 30 N N1 9NH . . . B 2 18.67 -3.305 13.144 1 20.15 ? N1 9NH 601 A 1 HETATM 31 C C17 9NH . . . B 2 17.893 -4.366 12.969 1 16.97 ? C17 9NH 601 A 1 HETATM 32 C C18 9NH . . . B 2 16.715 -4.475 13.766 1 16.64 ? C18 9NH 601 A 1 HETATM 33 N N4 9NH . . . B 2 17.233 -2.452 14.844 1 15.7 ? N4 9NH 601 A 1 HETATM 34 N N7 9NH . . . B 2 19.122 -1.301 14.084 1 18.89 ? N7 9NH 601 A 1 HETATM 35 F F4 9NH . . . B 2 10.552 -8.469 9.227 1 20.25 ? F4 9NH 601 A 1 HETATM 36 O O1 9NH . . . B 2 16.015 -6.255 12.5 1 16.76 ? O1 9NH 601 A 1 HETATM 37 O O2 9NH . . . B 2 10.777 -6.532 11.311 1 18.11 ? O2 9NH 601 A 1 HETATM 38 O O3 9NH . . . B 2 15.369 -3.576 15.537 1 16.99 ? O3 9NH 601 A 1 HETATM 39 C C28 9NH . . . B 2 17.856 0.306 15.574 1 19.62 ? C28 9NH 601 A 1 HETATM 40 C C29 9NH . . . B 2 19.267 1.949 16.661 1 22.5 ? C29 9NH 601 A 1 HETATM 41 C C5 9NH . . . B 2 20.385 0.338 15.148 1 18.95 ? C5 9NH 601 A 1 HETATM 42 N N2 9NH . . . B 2 19.979 4.922 19.312 1 30.78 ? N2 9NH 601 A 1 HETATM 43 C C4 9NH . . . B 2 20.092 4.215 17.013 1 27.22 ? C4 9NH 601 A 1 HETATM 44 N N5 9NH . . . B 2 19.362 3.012 17.491 1 24.65 ? N5 9NH 601 A 1 HETATM 45 C C6 9NH . . . B 2 18.752 2.965 18.843 1 26.52 ? C6 9NH 601 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #