data_3B38 # _model_server_result.job_id UtVajeGRO8f8Ak6L0p_AUw _model_server_result.datetime_utc '2024-10-10 15:16:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":192}' # _entry.id 3B38 # _exptl.entry_id 3B38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3B38 _cell.length_a 66.842 _cell.length_b 66.842 _cell.length_c 175.852 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 29.308667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3B38 _atom_sites.fract_transf_matrix[1][1] 0.014961 _atom_sites.fract_transf_matrix[1][2] 0.008638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 190 1 EDO EDO . C 2 EDO A 1 191 2 EDO EDO . D 2 EDO A 1 192 3 EDO EDO . E 2 EDO A 1 193 4 EDO EDO . F 2 EDO A 1 194 5 EDO EDO . G 2 EDO A 1 195 6 EDO EDO . H 2 EDO A 1 196 7 EDO EDO . I 3 HOH A 1 197 1 HOH HOH . I 3 HOH A 2 198 2 HOH HOH . I 3 HOH A 3 199 3 HOH HOH . I 3 HOH A 4 200 4 HOH HOH . I 3 HOH A 5 201 5 HOH HOH . I 3 HOH A 6 202 6 HOH HOH . I 3 HOH A 7 203 7 HOH HOH . I 3 HOH A 8 204 8 HOH HOH . I 3 HOH A 9 205 9 HOH HOH . I 3 HOH A 10 206 10 HOH HOH . I 3 HOH A 11 207 11 HOH HOH . I 3 HOH A 12 208 12 HOH HOH . I 3 HOH A 13 209 13 HOH HOH . I 3 HOH A 14 210 14 HOH HOH . I 3 HOH A 15 211 15 HOH HOH . I 3 HOH A 16 212 16 HOH HOH . I 3 HOH A 17 213 17 HOH HOH . I 3 HOH A 18 214 18 HOH HOH . I 3 HOH A 19 215 19 HOH HOH . I 3 HOH A 20 216 20 HOH HOH . I 3 HOH A 21 217 21 HOH HOH . I 3 HOH A 22 218 22 HOH HOH . I 3 HOH A 23 219 23 HOH HOH . I 3 HOH A 24 220 24 HOH HOH . I 3 HOH A 25 221 25 HOH HOH . I 3 HOH A 26 222 26 HOH HOH . I 3 HOH A 27 223 27 HOH HOH . I 3 HOH A 28 224 28 HOH HOH . I 3 HOH A 29 225 29 HOH HOH . I 3 HOH A 30 226 30 HOH HOH . I 3 HOH A 31 227 31 HOH HOH . I 3 HOH A 32 228 32 HOH HOH . I 3 HOH A 33 229 33 HOH HOH . I 3 HOH A 34 230 34 HOH HOH . I 3 HOH A 35 231 35 HOH HOH . I 3 HOH A 36 232 36 HOH HOH . I 3 HOH A 37 233 37 HOH HOH . I 3 HOH A 38 234 38 HOH HOH . I 3 HOH A 39 235 39 HOH HOH . I 3 HOH A 40 236 40 HOH HOH . I 3 HOH A 41 237 41 HOH HOH . I 3 HOH A 42 238 42 HOH HOH . I 3 HOH A 43 239 43 HOH HOH . I 3 HOH A 44 240 44 HOH HOH . I 3 HOH A 45 241 45 HOH HOH . I 3 HOH A 46 242 46 HOH HOH . I 3 HOH A 47 243 47 HOH HOH . I 3 HOH A 48 244 48 HOH HOH . I 3 HOH A 49 245 49 HOH HOH . I 3 HOH A 50 246 50 HOH HOH . I 3 HOH A 51 247 51 HOH HOH . I 3 HOH A 52 248 52 HOH HOH . I 3 HOH A 53 249 53 HOH HOH . I 3 HOH A 54 250 54 HOH HOH . I 3 HOH A 55 251 55 HOH HOH . I 3 HOH A 56 252 56 HOH HOH . I 3 HOH A 57 253 57 HOH HOH . I 3 HOH A 58 254 58 HOH HOH . I 3 HOH A 59 255 59 HOH HOH . I 3 HOH A 60 256 60 HOH HOH . I 3 HOH A 61 257 61 HOH HOH . I 3 HOH A 62 258 62 HOH HOH . I 3 HOH A 63 259 63 HOH HOH . I 3 HOH A 64 260 64 HOH HOH . I 3 HOH A 65 261 65 HOH HOH . I 3 HOH A 66 262 66 HOH HOH . I 3 HOH A 67 263 67 HOH HOH . I 3 HOH A 68 264 68 HOH HOH . I 3 HOH A 69 265 69 HOH HOH . I 3 HOH A 70 266 70 HOH HOH . I 3 HOH A 71 267 71 HOH HOH . I 3 HOH A 72 268 72 HOH HOH . I 3 HOH A 73 269 73 HOH HOH . I 3 HOH A 74 270 74 HOH HOH . I 3 HOH A 75 271 75 HOH HOH . I 3 HOH A 76 272 76 HOH HOH . I 3 HOH A 77 273 77 HOH HOH . I 3 HOH A 78 274 78 HOH HOH . I 3 HOH A 79 275 79 HOH HOH . I 3 HOH A 80 276 80 HOH HOH . I 3 HOH A 81 277 81 HOH HOH . I 3 HOH A 82 278 82 HOH HOH . I 3 HOH A 83 279 83 HOH HOH . I 3 HOH A 84 280 84 HOH HOH . I 3 HOH A 85 281 85 HOH HOH . I 3 HOH A 86 282 86 HOH HOH . I 3 HOH A 87 283 87 HOH HOH . I 3 HOH A 88 284 88 HOH HOH . I 3 HOH A 89 285 89 HOH HOH . I 3 HOH A 90 286 90 HOH HOH . I 3 HOH A 91 287 91 HOH HOH . I 3 HOH A 92 288 92 HOH HOH . I 3 HOH A 93 289 93 HOH HOH . I 3 HOH A 94 290 94 HOH HOH . I 3 HOH A 95 291 95 HOH HOH . I 3 HOH A 96 292 96 HOH HOH . I 3 HOH A 97 293 97 HOH HOH . I 3 HOH A 98 294 98 HOH HOH . I 3 HOH A 99 295 99 HOH HOH . I 3 HOH A 100 296 100 HOH HOH . I 3 HOH A 101 297 101 HOH HOH . I 3 HOH A 102 298 102 HOH HOH . I 3 HOH A 103 299 103 HOH HOH . I 3 HOH A 104 300 104 HOH HOH . I 3 HOH A 105 301 105 HOH HOH . I 3 HOH A 106 302 106 HOH HOH . I 3 HOH A 107 303 107 HOH HOH . I 3 HOH A 108 304 108 HOH HOH . I 3 HOH A 109 305 109 HOH HOH . I 3 HOH A 110 306 110 HOH HOH . I 3 HOH A 111 307 111 HOH HOH . I 3 HOH A 112 308 112 HOH HOH . I 3 HOH A 113 309 113 HOH HOH . I 3 HOH A 114 310 114 HOH HOH . I 3 HOH A 115 311 115 HOH HOH . I 3 HOH A 116 312 116 HOH HOH . I 3 HOH A 117 313 117 HOH HOH . I 3 HOH A 118 314 118 HOH HOH . I 3 HOH A 119 315 119 HOH HOH . I 3 HOH A 120 316 120 HOH HOH . I 3 HOH A 121 317 121 HOH HOH . I 3 HOH A 122 318 122 HOH HOH . I 3 HOH A 123 319 123 HOH HOH . I 3 HOH A 124 320 124 HOH HOH . I 3 HOH A 125 321 125 HOH HOH . I 3 HOH A 126 322 126 HOH HOH . I 3 HOH A 127 323 127 HOH HOH . I 3 HOH A 128 324 128 HOH HOH . I 3 HOH A 129 325 129 HOH HOH . I 3 HOH A 130 326 130 HOH HOH . I 3 HOH A 131 327 131 HOH HOH . I 3 HOH A 132 328 132 HOH HOH . I 3 HOH A 133 329 133 HOH HOH . I 3 HOH A 134 330 134 HOH HOH . I 3 HOH A 135 331 135 HOH HOH . I 3 HOH A 136 332 136 HOH HOH . I 3 HOH A 137 333 137 HOH HOH . I 3 HOH A 138 334 138 HOH HOH . I 3 HOH A 139 335 139 HOH HOH . I 3 HOH A 140 336 140 HOH HOH . I 3 HOH A 141 337 141 HOH HOH . I 3 HOH A 142 338 142 HOH HOH . I 3 HOH A 143 339 143 HOH HOH . I 3 HOH A 144 340 144 HOH HOH . I 3 HOH A 145 341 145 HOH HOH . I 3 HOH A 146 342 146 HOH HOH . I 3 HOH A 147 343 147 HOH HOH . I 3 HOH A 148 344 148 HOH HOH . I 3 HOH A 149 345 149 HOH HOH . I 3 HOH A 150 346 150 HOH HOH . I 3 HOH A 151 347 151 HOH HOH . I 3 HOH A 152 348 152 HOH HOH . I 3 HOH A 153 349 153 HOH HOH . I 3 HOH A 154 350 154 HOH HOH . I 3 HOH A 155 351 155 HOH HOH . I 3 HOH A 156 352 156 HOH HOH . I 3 HOH A 157 353 157 HOH HOH . I 3 HOH A 158 354 158 HOH HOH . I 3 HOH A 159 355 159 HOH HOH . I 3 HOH A 160 356 160 HOH HOH . I 3 HOH A 161 357 161 HOH HOH . I 3 HOH A 162 358 162 HOH HOH . I 3 HOH A 163 359 163 HOH HOH . I 3 HOH A 164 360 164 HOH HOH . I 3 HOH A 165 361 165 HOH HOH . I 3 HOH A 166 362 166 HOH HOH . I 3 HOH A 167 363 167 HOH HOH . I 3 HOH A 168 364 168 HOH HOH . I 3 HOH A 169 365 169 HOH HOH . I 3 HOH A 170 366 170 HOH HOH . I 3 HOH A 171 367 171 HOH HOH . I 3 HOH A 172 368 172 HOH HOH . I 3 HOH A 173 369 173 HOH HOH . I 3 HOH A 174 370 174 HOH HOH . I 3 HOH A 175 371 175 HOH HOH . I 3 HOH A 176 372 176 HOH HOH . I 3 HOH A 177 373 177 HOH HOH . I 3 HOH A 178 374 178 HOH HOH . I 3 HOH A 179 375 179 HOH HOH . I 3 HOH A 180 376 180 HOH HOH . I 3 HOH A 181 377 181 HOH HOH . I 3 HOH A 182 378 182 HOH HOH . I 3 HOH A 183 379 183 HOH HOH . I 3 HOH A 184 380 184 HOH HOH . I 3 HOH A 185 381 185 HOH HOH . I 3 HOH A 186 382 186 HOH HOH . I 3 HOH A 187 383 187 HOH HOH . I 3 HOH A 188 384 188 HOH HOH . I 3 HOH A 189 385 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -29.948 25.172 4.751 1 29.87 ? C1 EDO 192 A 1 HETATM 2 O O1 EDO . . . D 2 -30.162 26.192 5.733 1 27.53 ? O1 EDO 192 A 1 HETATM 3 C C2 EDO . . . D 2 -30.386 25.501 3.327 1 27.08 ? C2 EDO 192 A 1 HETATM 4 O O2 EDO . . . D 2 -29.373 25.205 2.351 1 27.33 ? O2 EDO 192 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #