data_3B3D # _model_server_result.job_id 9pD4r2TwmOopp6gY1jTYwQ _model_server_result.datetime_utc '2025-01-18 01:46:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":281}' # _entry.id 3B3D # _exptl.entry_id 3B3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B3D _cell.length_a 83.106 _cell.length_b 89.17 _cell.length_c 115.687 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,F,I 2 1 C,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D CA CA . A CA 281 1_555 H O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc2 F CA CA . B CA 281 1_555 I O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 G CA CA . C CA 281 1_555 J O HOH . C HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3B3D _atom_sites.fract_transf_matrix[1][1] 0.012033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 281 281 CA CA . E 2 CA A 1 282 282 CA CA . F 2 CA B 1 281 281 CA CA . G 2 CA C 1 281 281 CA CA . H 3 HOH A 1 283 283 HOH HOH . H 3 HOH A 2 284 284 HOH HOH . H 3 HOH A 3 285 285 HOH HOH . H 3 HOH A 4 286 286 HOH HOH . H 3 HOH A 5 287 287 HOH HOH . H 3 HOH A 6 288 288 HOH HOH . H 3 HOH A 7 289 289 HOH HOH . H 3 HOH A 8 290 290 HOH HOH . H 3 HOH A 9 291 291 HOH HOH . H 3 HOH A 10 292 292 HOH HOH . H 3 HOH A 11 293 293 HOH HOH . H 3 HOH A 12 294 294 HOH HOH . H 3 HOH A 13 295 295 HOH HOH . H 3 HOH A 14 296 296 HOH HOH . H 3 HOH A 15 297 297 HOH HOH . H 3 HOH A 16 298 298 HOH HOH . H 3 HOH A 17 299 299 HOH HOH . H 3 HOH A 18 300 300 HOH HOH . H 3 HOH A 19 301 301 HOH HOH . H 3 HOH A 20 302 302 HOH HOH . H 3 HOH A 21 303 303 HOH HOH . H 3 HOH A 22 304 304 HOH HOH . H 3 HOH A 23 305 305 HOH HOH . H 3 HOH A 24 306 306 HOH HOH . H 3 HOH A 25 307 307 HOH HOH . H 3 HOH A 26 308 308 HOH HOH . H 3 HOH A 27 309 309 HOH HOH . H 3 HOH A 28 310 310 HOH HOH . H 3 HOH A 29 311 311 HOH HOH . H 3 HOH A 30 312 312 HOH HOH . H 3 HOH A 31 313 313 HOH HOH . H 3 HOH A 32 314 314 HOH HOH . H 3 HOH A 33 315 315 HOH HOH . H 3 HOH A 34 316 316 HOH HOH . H 3 HOH A 35 317 317 HOH HOH . H 3 HOH A 36 318 318 HOH HOH . H 3 HOH A 37 319 319 HOH HOH . H 3 HOH A 38 320 320 HOH HOH . H 3 HOH A 39 321 321 HOH HOH . H 3 HOH A 40 322 322 HOH HOH . H 3 HOH A 41 323 323 HOH HOH . H 3 HOH A 42 324 324 HOH HOH . H 3 HOH A 43 325 325 HOH HOH . H 3 HOH A 44 326 326 HOH HOH . H 3 HOH A 45 327 327 HOH HOH . H 3 HOH A 46 328 328 HOH HOH . H 3 HOH A 47 329 329 HOH HOH . H 3 HOH A 48 330 330 HOH HOH . H 3 HOH A 49 331 331 HOH HOH . H 3 HOH A 50 332 332 HOH HOH . H 3 HOH A 51 333 333 HOH HOH . H 3 HOH A 52 334 334 HOH HOH . H 3 HOH A 53 335 335 HOH HOH . H 3 HOH A 54 336 336 HOH HOH . H 3 HOH A 55 337 337 HOH HOH . H 3 HOH A 56 338 338 HOH HOH . H 3 HOH A 57 339 339 HOH HOH . H 3 HOH A 58 340 340 HOH HOH . H 3 HOH A 59 341 341 HOH HOH . H 3 HOH A 60 342 342 HOH HOH . H 3 HOH A 61 343 343 HOH HOH . H 3 HOH A 62 344 344 HOH HOH . H 3 HOH A 63 345 345 HOH HOH . H 3 HOH A 64 346 346 HOH HOH . H 3 HOH A 65 347 347 HOH HOH . H 3 HOH A 66 348 348 HOH HOH . H 3 HOH A 67 349 349 HOH HOH . H 3 HOH A 68 350 350 HOH HOH . H 3 HOH A 69 351 351 HOH HOH . H 3 HOH A 70 352 352 HOH HOH . H 3 HOH A 71 353 353 HOH HOH . H 3 HOH A 72 354 354 HOH HOH . H 3 HOH A 73 355 355 HOH HOH . H 3 HOH A 74 356 356 HOH HOH . H 3 HOH A 75 357 357 HOH HOH . H 3 HOH A 76 358 358 HOH HOH . H 3 HOH A 77 359 359 HOH HOH . H 3 HOH A 78 360 360 HOH HOH . H 3 HOH A 79 361 361 HOH HOH . H 3 HOH A 80 362 362 HOH HOH . H 3 HOH A 81 363 363 HOH HOH . H 3 HOH A 82 364 364 HOH HOH . H 3 HOH A 83 365 365 HOH HOH . H 3 HOH A 84 366 366 HOH HOH . H 3 HOH A 85 367 367 HOH HOH . H 3 HOH A 86 368 368 HOH HOH . H 3 HOH A 87 369 369 HOH HOH . H 3 HOH A 88 370 370 HOH HOH . H 3 HOH A 89 371 371 HOH HOH . H 3 HOH A 90 372 372 HOH HOH . H 3 HOH A 91 373 373 HOH HOH . H 3 HOH A 92 374 374 HOH HOH . I 3 HOH B 1 282 282 HOH HOH . I 3 HOH B 2 283 283 HOH HOH . I 3 HOH B 3 284 284 HOH HOH . I 3 HOH B 4 285 285 HOH HOH . I 3 HOH B 5 286 286 HOH HOH . I 3 HOH B 6 287 287 HOH HOH . I 3 HOH B 7 288 288 HOH HOH . I 3 HOH B 8 289 289 HOH HOH . I 3 HOH B 9 290 290 HOH HOH . I 3 HOH B 10 291 291 HOH HOH . I 3 HOH B 11 292 292 HOH HOH . I 3 HOH B 12 293 293 HOH HOH . I 3 HOH B 13 294 294 HOH HOH . I 3 HOH B 14 295 295 HOH HOH . I 3 HOH B 15 296 296 HOH HOH . I 3 HOH B 16 297 297 HOH HOH . I 3 HOH B 17 298 298 HOH HOH . I 3 HOH B 18 299 299 HOH HOH . I 3 HOH B 19 300 300 HOH HOH . I 3 HOH B 20 301 301 HOH HOH . I 3 HOH B 21 302 302 HOH HOH . I 3 HOH B 22 303 303 HOH HOH . I 3 HOH B 23 304 304 HOH HOH . I 3 HOH B 24 305 305 HOH HOH . I 3 HOH B 25 306 306 HOH HOH . I 3 HOH B 26 307 307 HOH HOH . I 3 HOH B 27 308 308 HOH HOH . I 3 HOH B 28 309 309 HOH HOH . I 3 HOH B 29 310 310 HOH HOH . I 3 HOH B 30 311 311 HOH HOH . I 3 HOH B 31 312 312 HOH HOH . I 3 HOH B 32 313 313 HOH HOH . I 3 HOH B 33 314 314 HOH HOH . I 3 HOH B 34 315 315 HOH HOH . I 3 HOH B 35 316 316 HOH HOH . I 3 HOH B 36 317 317 HOH HOH . I 3 HOH B 37 318 318 HOH HOH . I 3 HOH B 38 319 319 HOH HOH . I 3 HOH B 39 320 320 HOH HOH . I 3 HOH B 40 321 321 HOH HOH . I 3 HOH B 41 322 322 HOH HOH . I 3 HOH B 42 323 323 HOH HOH . I 3 HOH B 43 324 324 HOH HOH . I 3 HOH B 44 325 325 HOH HOH . I 3 HOH B 45 326 326 HOH HOH . I 3 HOH B 46 327 327 HOH HOH . I 3 HOH B 47 328 328 HOH HOH . I 3 HOH B 48 329 329 HOH HOH . I 3 HOH B 49 330 330 HOH HOH . I 3 HOH B 50 331 331 HOH HOH . I 3 HOH B 51 332 332 HOH HOH . I 3 HOH B 52 333 333 HOH HOH . I 3 HOH B 53 334 334 HOH HOH . I 3 HOH B 54 335 335 HOH HOH . I 3 HOH B 55 336 336 HOH HOH . I 3 HOH B 56 337 337 HOH HOH . I 3 HOH B 57 338 338 HOH HOH . I 3 HOH B 58 339 339 HOH HOH . I 3 HOH B 59 340 340 HOH HOH . I 3 HOH B 60 341 341 HOH HOH . I 3 HOH B 61 342 342 HOH HOH . I 3 HOH B 62 343 343 HOH HOH . I 3 HOH B 63 344 344 HOH HOH . I 3 HOH B 64 345 345 HOH HOH . I 3 HOH B 65 346 346 HOH HOH . I 3 HOH B 66 347 347 HOH HOH . I 3 HOH B 67 348 348 HOH HOH . I 3 HOH B 68 349 349 HOH HOH . I 3 HOH B 69 350 350 HOH HOH . I 3 HOH B 70 351 351 HOH HOH . I 3 HOH B 71 352 353 HOH HOH . I 3 HOH B 72 353 354 HOH HOH . I 3 HOH B 73 354 355 HOH HOH . I 3 HOH B 74 355 356 HOH HOH . I 3 HOH B 75 356 357 HOH HOH . I 3 HOH B 76 357 358 HOH HOH . I 3 HOH B 77 358 359 HOH HOH . I 3 HOH B 78 359 360 HOH HOH . I 3 HOH B 79 360 361 HOH HOH . I 3 HOH B 80 361 362 HOH HOH . I 3 HOH B 81 362 299 HOH HOH . J 3 HOH C 1 352 352 HOH HOH . J 3 HOH C 2 353 282 HOH HOH . J 3 HOH C 3 354 283 HOH HOH . J 3 HOH C 4 355 284 HOH HOH . J 3 HOH C 5 356 285 HOH HOH . J 3 HOH C 6 357 286 HOH HOH . J 3 HOH C 7 358 287 HOH HOH . J 3 HOH C 8 359 288 HOH HOH . J 3 HOH C 9 360 289 HOH HOH . J 3 HOH C 10 361 290 HOH HOH . J 3 HOH C 11 362 291 HOH HOH . J 3 HOH C 12 363 292 HOH HOH . J 3 HOH C 13 364 293 HOH HOH . J 3 HOH C 14 365 294 HOH HOH . J 3 HOH C 15 366 295 HOH HOH . J 3 HOH C 16 367 296 HOH HOH . J 3 HOH C 17 368 297 HOH HOH . J 3 HOH C 18 369 298 HOH HOH . J 3 HOH C 19 370 300 HOH HOH . J 3 HOH C 20 371 301 HOH HOH . J 3 HOH C 21 372 302 HOH HOH . J 3 HOH C 22 373 303 HOH HOH . J 3 HOH C 23 374 304 HOH HOH . J 3 HOH C 24 375 305 HOH HOH . J 3 HOH C 25 376 306 HOH HOH . J 3 HOH C 26 377 307 HOH HOH . J 3 HOH C 27 378 308 HOH HOH . J 3 HOH C 28 379 309 HOH HOH . J 3 HOH C 29 380 310 HOH HOH . J 3 HOH C 30 381 311 HOH HOH . J 3 HOH C 31 382 312 HOH HOH . J 3 HOH C 32 383 313 HOH HOH . J 3 HOH C 33 384 314 HOH HOH . J 3 HOH C 34 385 315 HOH HOH . J 3 HOH C 35 386 316 HOH HOH . J 3 HOH C 36 387 317 HOH HOH . J 3 HOH C 37 388 318 HOH HOH . J 3 HOH C 38 389 319 HOH HOH . J 3 HOH C 39 390 320 HOH HOH . J 3 HOH C 40 391 321 HOH HOH . J 3 HOH C 41 392 322 HOH HOH . J 3 HOH C 42 393 323 HOH HOH . J 3 HOH C 43 394 324 HOH HOH . J 3 HOH C 44 395 325 HOH HOH . J 3 HOH C 45 396 326 HOH HOH . J 3 HOH C 46 397 327 HOH HOH . J 3 HOH C 47 398 328 HOH HOH . J 3 HOH C 48 399 329 HOH HOH . J 3 HOH C 49 400 330 HOH HOH . J 3 HOH C 50 401 331 HOH HOH . J 3 HOH C 51 402 332 HOH HOH . J 3 HOH C 52 403 333 HOH HOH . J 3 HOH C 53 404 334 HOH HOH . J 3 HOH C 54 405 335 HOH HOH . J 3 HOH C 55 406 336 HOH HOH . J 3 HOH C 56 407 337 HOH HOH . J 3 HOH C 57 408 338 HOH HOH . J 3 HOH C 58 409 339 HOH HOH . J 3 HOH C 59 410 340 HOH HOH . J 3 HOH C 60 411 341 HOH HOH . J 3 HOH C 61 412 342 HOH HOH . J 3 HOH C 62 413 343 HOH HOH . J 3 HOH C 63 414 344 HOH HOH . J 3 HOH C 64 415 345 HOH HOH . J 3 HOH C 65 416 346 HOH HOH . J 3 HOH C 66 417 347 HOH HOH . J 3 HOH C 67 418 348 HOH HOH . J 3 HOH C 68 419 349 HOH HOH . J 3 HOH C 69 420 350 HOH HOH . J 3 HOH C 70 421 351 HOH HOH . J 3 HOH C 71 422 352 HOH HOH . J 3 HOH C 72 423 353 HOH HOH . J 3 HOH C 73 424 354 HOH HOH . J 3 HOH C 74 425 355 HOH HOH . J 3 HOH C 75 426 356 HOH HOH . J 3 HOH C 76 427 357 HOH HOH . J 3 HOH C 77 428 358 HOH HOH . J 3 HOH C 78 429 359 HOH HOH . J 3 HOH C 79 430 360 HOH HOH . J 3 HOH C 80 431 361 HOH HOH . J 3 HOH C 81 432 362 HOH HOH . J 3 HOH C 82 433 363 HOH HOH . J 3 HOH C 83 434 364 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x -14.759 _atom_site.Cartn_y 61.269 _atom_site.Cartn_z -27.223 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 281 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 1008 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #