data_3B3J
#
_model_server_result.job_id            li_nG0qvZRL9otmoeDUVfw 
_model_server_result.datetime_utc      '2024-11-16 18:35:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3b3j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    3B3J 
#
_exptl.entry_id    3B3J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3B3J 
_cell.length_a            136.022 
_cell.length_b            136.022 
_cell.length_c            125.304 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3B3J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     3B3J 
_atom_sites.fract_transf_matrix[1][1]    0.007352 
_atom_sites.fract_transf_matrix[1][2]    0.004245 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008489 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BEN A 1 1001 1001 BEN BEN . 
C 2 BEN A 1 2001 2001 BEN BEN . 
D 2 BEN A 1 3001 3001 BEN BEN . 
E 2 BEN A 1 4001 4001 BEN BEN . 
F 2 BEN A 1 5001 5001 BEN BEN . 
G 2 BEN A 1 6001 6001 BEN BEN . 
H 3 HOH A 1 6002 1 HOH HOH . 
H 3 HOH A 2 6003 2 HOH HOH . 
H 3 HOH A 3 6004 3 HOH HOH . 
H 3 HOH A 4 6005 4 HOH HOH . 
H 3 HOH A 5 6006 5 HOH HOH . 
H 3 HOH A 6 6007 6 HOH HOH . 
H 3 HOH A 7 6008 7 HOH HOH . 
H 3 HOH A 8 6009 8 HOH HOH . 
H 3 HOH A 9 6010 9 HOH HOH . 
H 3 HOH A 10 6011 10 HOH HOH . 
H 3 HOH A 11 6012 11 HOH HOH . 
H 3 HOH A 12 6013 12 HOH HOH . 
H 3 HOH A 13 6014 13 HOH HOH . 
H 3 HOH A 14 6015 14 HOH HOH . 
H 3 HOH A 15 6016 15 HOH HOH . 
H 3 HOH A 16 6017 16 HOH HOH . 
H 3 HOH A 17 6018 17 HOH HOH . 
H 3 HOH A 18 6019 18 HOH HOH . 
H 3 HOH A 19 6020 19 HOH HOH . 
H 3 HOH A 20 6021 20 HOH HOH . 
H 3 HOH A 21 6022 21 HOH HOH . 
H 3 HOH A 22 6023 22 HOH HOH . 
H 3 HOH A 23 6024 23 HOH HOH . 
H 3 HOH A 24 6025 24 HOH HOH . 
H 3 HOH A 25 6026 25 HOH HOH . 
H 3 HOH A 26 6027 26 HOH HOH . 
H 3 HOH A 27 6028 27 HOH HOH . 
H 3 HOH A 28 6029 28 HOH HOH . 
H 3 HOH A 29 6030 29 HOH HOH . 
H 3 HOH A 30 6031 30 HOH HOH . 
H 3 HOH A 31 6032 31 HOH HOH . 
H 3 HOH A 32 6033 32 HOH HOH . 
H 3 HOH A 33 6034 33 HOH HOH . 
H 3 HOH A 34 6035 34 HOH HOH . 
H 3 HOH A 35 6036 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . B 2 56.249 12.259 74.099 1 61.4 ? C1 BEN 1001 A 1 
HETATM 2 C C2 BEN . . . B 2 57.183 12.264 75.152 1 62.2 ? C2 BEN 1001 A 1 
HETATM 3 C C3 BEN . . . B 2 58.433 12.902 75.016 1 61.81 ? C3 BEN 1001 A 1 
HETATM 4 C C4 BEN . . . B 2 58.75 13.535 73.803 1 61.55 ? C4 BEN 1001 A 1 
HETATM 5 C C5 BEN . . . B 2 57.824 13.537 72.745 1 59.8 ? C5 BEN 1001 A 1 
HETATM 6 C C6 BEN . . . B 2 56.585 12.9 72.894 1 60.05 ? C6 BEN 1001 A 1 
HETATM 7 C C BEN . . . B 2 54.912 11.537 74.26 1 61.39 ? C BEN 1001 A 1 
HETATM 8 N N1 BEN . . . B 2 54.736 10.778 75.256 1 60.37 ? N1 BEN 1001 A 1 
HETATM 9 N N2 BEN . . . B 2 53.923 11.648 73.346 1 61.38 ? N2 BEN 1001 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#