data_3B3V # _model_server_result.job_id xcgFUdGR3kW0_cTOCHDXIQ _model_server_result.datetime_utc '2024-10-12 07:31:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":294}' # _entry.id 3B3V # _exptl.entry_id 3B3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3B3V _cell.length_a 109.317 _cell.length_b 109.317 _cell.length_c 91.003 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 223 A CYS 223 1_555 A SG CYS 227 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 C ZN ZN . A ZN 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 A OD2 ASP 117 A ASP 117 1_555 B ZN ZN . A ZN 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 A OD1 ASP 117 A ASP 117 1_555 C ZN ZN . A ZN 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc4 A OE1 GLU 152 A GLU 152 1_555 B ZN ZN . A ZN 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 A OE2 GLU 152 A GLU 152 1_555 B ZN ZN . A ZN 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 A OD1 ASP 179 A ASP 179 1_555 C ZN ZN . A ZN 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc7 A NE2 HIS 256 A HIS 256 1_555 B ZN ZN . A ZN 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc8 B ZN ZN . A ZN 292 1_555 I O VAL . A VAL 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc9 C ZN ZN . A ZN 293 1_555 I N VAL . A VAL 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc10 C ZN ZN . A ZN 293 1_555 I O VAL . A VAL 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc11 F NA NA . A NA 296 1_555 J O HOH . A HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3B3V _atom_sites.fract_transf_matrix[1][1] 0.009148 _atom_sites.fract_transf_matrix[1][2] 0.005281 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 292 1 ZN ZN . C 2 ZN A 1 293 2 ZN ZN . D 3 NA A 1 294 1 NA NA . E 3 NA A 1 295 2 NA NA . F 3 NA A 1 296 3 NA NA . G 4 SCN A 1 297 1 SCN SCN . H 4 SCN A 1 298 2 SCN SCN . I 5 VAL A 1 299 1 VAL VAL . J 6 HOH A 1 300 1 HOH HOH . J 6 HOH A 2 301 2 HOH HOH . J 6 HOH A 3 302 3 HOH HOH . J 6 HOH A 4 303 4 HOH HOH . J 6 HOH A 5 304 5 HOH HOH . J 6 HOH A 6 305 6 HOH HOH . J 6 HOH A 7 306 7 HOH HOH . J 6 HOH A 8 307 8 HOH HOH . J 6 HOH A 9 308 9 HOH HOH . J 6 HOH A 10 309 10 HOH HOH . J 6 HOH A 11 310 11 HOH HOH . J 6 HOH A 12 311 12 HOH HOH . J 6 HOH A 13 312 13 HOH HOH . J 6 HOH A 14 313 14 HOH HOH . J 6 HOH A 15 314 15 HOH HOH . J 6 HOH A 16 315 16 HOH HOH . J 6 HOH A 17 316 17 HOH HOH . J 6 HOH A 18 317 18 HOH HOH . J 6 HOH A 19 318 19 HOH HOH . J 6 HOH A 20 319 20 HOH HOH . J 6 HOH A 21 320 21 HOH HOH . J 6 HOH A 22 321 22 HOH HOH . J 6 HOH A 23 322 23 HOH HOH . J 6 HOH A 24 323 24 HOH HOH . J 6 HOH A 25 324 25 HOH HOH . J 6 HOH A 26 325 26 HOH HOH . J 6 HOH A 27 326 27 HOH HOH . J 6 HOH A 28 327 28 HOH HOH . J 6 HOH A 29 328 29 HOH HOH . J 6 HOH A 30 329 30 HOH HOH . J 6 HOH A 31 330 31 HOH HOH . J 6 HOH A 32 331 32 HOH HOH . J 6 HOH A 33 332 33 HOH HOH . J 6 HOH A 34 333 34 HOH HOH . J 6 HOH A 35 334 35 HOH HOH . J 6 HOH A 36 335 36 HOH HOH . J 6 HOH A 37 336 37 HOH HOH . J 6 HOH A 38 337 38 HOH HOH . J 6 HOH A 39 338 39 HOH HOH . J 6 HOH A 40 339 40 HOH HOH . J 6 HOH A 41 340 41 HOH HOH . J 6 HOH A 42 341 42 HOH HOH . J 6 HOH A 43 342 43 HOH HOH . J 6 HOH A 44 343 44 HOH HOH . J 6 HOH A 45 344 45 HOH HOH . J 6 HOH A 46 345 46 HOH HOH . J 6 HOH A 47 346 47 HOH HOH . J 6 HOH A 48 347 48 HOH HOH . J 6 HOH A 49 348 49 HOH HOH . J 6 HOH A 50 349 50 HOH HOH . J 6 HOH A 51 350 51 HOH HOH . J 6 HOH A 52 351 52 HOH HOH . J 6 HOH A 53 352 53 HOH HOH . J 6 HOH A 54 353 54 HOH HOH . J 6 HOH A 55 354 55 HOH HOH . J 6 HOH A 56 355 56 HOH HOH . J 6 HOH A 57 356 57 HOH HOH . J 6 HOH A 58 357 58 HOH HOH . J 6 HOH A 59 358 59 HOH HOH . J 6 HOH A 60 359 60 HOH HOH . J 6 HOH A 61 360 62 HOH HOH . J 6 HOH A 62 361 63 HOH HOH . J 6 HOH A 63 362 64 HOH HOH . J 6 HOH A 64 363 65 HOH HOH . J 6 HOH A 65 364 66 HOH HOH . J 6 HOH A 66 365 68 HOH HOH . J 6 HOH A 67 366 69 HOH HOH . J 6 HOH A 68 367 70 HOH HOH . J 6 HOH A 69 368 71 HOH HOH . J 6 HOH A 70 369 72 HOH HOH . J 6 HOH A 71 370 73 HOH HOH . J 6 HOH A 72 371 74 HOH HOH . J 6 HOH A 73 372 75 HOH HOH . J 6 HOH A 74 373 76 HOH HOH . J 6 HOH A 75 374 77 HOH HOH . J 6 HOH A 76 375 78 HOH HOH . J 6 HOH A 77 376 79 HOH HOH . J 6 HOH A 78 377 80 HOH HOH . J 6 HOH A 79 378 81 HOH HOH . J 6 HOH A 80 379 82 HOH HOH . J 6 HOH A 81 380 84 HOH HOH . J 6 HOH A 82 381 85 HOH HOH . J 6 HOH A 83 382 86 HOH HOH . J 6 HOH A 84 383 87 HOH HOH . J 6 HOH A 85 384 88 HOH HOH . J 6 HOH A 86 385 89 HOH HOH . J 6 HOH A 87 386 90 HOH HOH . J 6 HOH A 88 387 91 HOH HOH . J 6 HOH A 89 388 92 HOH HOH . J 6 HOH A 90 389 93 HOH HOH . J 6 HOH A 91 390 94 HOH HOH . J 6 HOH A 92 391 95 HOH HOH . J 6 HOH A 93 392 96 HOH HOH . J 6 HOH A 94 393 97 HOH HOH . J 6 HOH A 95 394 98 HOH HOH . J 6 HOH A 96 395 99 HOH HOH . J 6 HOH A 97 396 100 HOH HOH . J 6 HOH A 98 397 101 HOH HOH . J 6 HOH A 99 398 102 HOH HOH . J 6 HOH A 100 399 103 HOH HOH . J 6 HOH A 101 400 104 HOH HOH . J 6 HOH A 102 401 105 HOH HOH . J 6 HOH A 103 402 106 HOH HOH . J 6 HOH A 104 403 107 HOH HOH . J 6 HOH A 105 404 108 HOH HOH . J 6 HOH A 106 405 109 HOH HOH . J 6 HOH A 107 406 110 HOH HOH . J 6 HOH A 108 407 111 HOH HOH . J 6 HOH A 109 408 112 HOH HOH . J 6 HOH A 110 409 113 HOH HOH . J 6 HOH A 111 410 114 HOH HOH . J 6 HOH A 112 411 115 HOH HOH . J 6 HOH A 113 412 116 HOH HOH . J 6 HOH A 114 413 117 HOH HOH . J 6 HOH A 115 414 118 HOH HOH . J 6 HOH A 116 415 119 HOH HOH . J 6 HOH A 117 416 120 HOH HOH . J 6 HOH A 118 417 121 HOH HOH . J 6 HOH A 119 418 122 HOH HOH . J 6 HOH A 120 419 123 HOH HOH . J 6 HOH A 121 420 124 HOH HOH . J 6 HOH A 122 421 125 HOH HOH . J 6 HOH A 123 422 126 HOH HOH . J 6 HOH A 124 423 127 HOH HOH . J 6 HOH A 125 424 128 HOH HOH . J 6 HOH A 126 425 129 HOH HOH . J 6 HOH A 127 426 130 HOH HOH . J 6 HOH A 128 427 131 HOH HOH . J 6 HOH A 129 428 132 HOH HOH . J 6 HOH A 130 429 133 HOH HOH . J 6 HOH A 131 430 134 HOH HOH . J 6 HOH A 132 431 135 HOH HOH . J 6 HOH A 133 432 136 HOH HOH . J 6 HOH A 134 433 137 HOH HOH . J 6 HOH A 135 434 138 HOH HOH . J 6 HOH A 136 435 139 HOH HOH . J 6 HOH A 137 436 140 HOH HOH . J 6 HOH A 138 437 141 HOH HOH . J 6 HOH A 139 438 142 HOH HOH . J 6 HOH A 140 439 143 HOH HOH . J 6 HOH A 141 440 144 HOH HOH . J 6 HOH A 142 441 145 HOH HOH . J 6 HOH A 143 442 146 HOH HOH . J 6 HOH A 144 443 147 HOH HOH . J 6 HOH A 145 444 148 HOH HOH . J 6 HOH A 146 445 149 HOH HOH . J 6 HOH A 147 446 150 HOH HOH . J 6 HOH A 148 447 151 HOH HOH . J 6 HOH A 149 448 152 HOH HOH . J 6 HOH A 150 449 153 HOH HOH . J 6 HOH A 151 450 154 HOH HOH . J 6 HOH A 152 451 155 HOH HOH . J 6 HOH A 153 452 156 HOH HOH . J 6 HOH A 154 453 157 HOH HOH . J 6 HOH A 155 454 158 HOH HOH . J 6 HOH A 156 455 159 HOH HOH . J 6 HOH A 157 456 160 HOH HOH . J 6 HOH A 158 457 161 HOH HOH . J 6 HOH A 159 458 162 HOH HOH . J 6 HOH A 160 459 163 HOH HOH . J 6 HOH A 161 460 164 HOH HOH . J 6 HOH A 162 461 165 HOH HOH . J 6 HOH A 163 462 166 HOH HOH . J 6 HOH A 164 463 167 HOH HOH . J 6 HOH A 165 464 168 HOH HOH . J 6 HOH A 166 465 169 HOH HOH . J 6 HOH A 167 466 170 HOH HOH . J 6 HOH A 168 467 171 HOH HOH . J 6 HOH A 169 468 172 HOH HOH . J 6 HOH A 170 469 173 HOH HOH . J 6 HOH A 171 470 174 HOH HOH . J 6 HOH A 172 471 175 HOH HOH . J 6 HOH A 173 472 176 HOH HOH . J 6 HOH A 174 473 177 HOH HOH . J 6 HOH A 175 474 178 HOH HOH . J 6 HOH A 176 475 179 HOH HOH . J 6 HOH A 177 476 180 HOH HOH . J 6 HOH A 178 477 181 HOH HOH . J 6 HOH A 179 478 182 HOH HOH . J 6 HOH A 180 479 183 HOH HOH . J 6 HOH A 181 480 184 HOH HOH . J 6 HOH A 182 481 185 HOH HOH . J 6 HOH A 183 482 186 HOH HOH . J 6 HOH A 184 483 187 HOH HOH . J 6 HOH A 185 484 188 HOH HOH . J 6 HOH A 186 485 189 HOH HOH . J 6 HOH A 187 486 190 HOH HOH . J 6 HOH A 188 487 191 HOH HOH . J 6 HOH A 189 488 192 HOH HOH . J 6 HOH A 190 489 193 HOH HOH . J 6 HOH A 191 490 194 HOH HOH . J 6 HOH A 192 491 195 HOH HOH . J 6 HOH A 193 492 196 HOH HOH . J 6 HOH A 194 493 197 HOH HOH . J 6 HOH A 195 494 198 HOH HOH . J 6 HOH A 196 495 199 HOH HOH . J 6 HOH A 197 496 200 HOH HOH . J 6 HOH A 198 497 201 HOH HOH . J 6 HOH A 199 498 202 HOH HOH . J 6 HOH A 200 499 203 HOH HOH . J 6 HOH A 201 500 204 HOH HOH . J 6 HOH A 202 501 205 HOH HOH . J 6 HOH A 203 502 206 HOH HOH . J 6 HOH A 204 503 207 HOH HOH . J 6 HOH A 205 504 208 HOH HOH . J 6 HOH A 206 505 209 HOH HOH . J 6 HOH A 207 506 210 HOH HOH . J 6 HOH A 208 507 211 HOH HOH . J 6 HOH A 209 508 212 HOH HOH . J 6 HOH A 210 509 213 HOH HOH . J 6 HOH A 211 510 214 HOH HOH . J 6 HOH A 212 511 215 HOH HOH . J 6 HOH A 213 512 216 HOH HOH . J 6 HOH A 214 513 217 HOH HOH . J 6 HOH A 215 514 218 HOH HOH . J 6 HOH A 216 515 219 HOH HOH . J 6 HOH A 217 516 220 HOH HOH . J 6 HOH A 218 517 221 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 34.479 _atom_site.Cartn_y -16.836 _atom_site.Cartn_z 39.613 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 294 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #