data_3B3W # _model_server_result.job_id aJlPxto9n0LIwoTSsRCTDw _model_server_result.datetime_utc '2024-11-23 11:02:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":295}' # _entry.id 3B3W # _exptl.entry_id 3B3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3B3W _cell.length_a 110.549 _cell.length_b 110.549 _cell.length_c 91.626 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 223 A CYS 223 1_555 A SG CYS 227 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 C ZN ZN . A ZN 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 A OD2 ASP 117 A ASP 117 1_555 B ZN ZN . A ZN 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 A OD1 ASP 117 A ASP 117 1_555 C ZN ZN . A ZN 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 A OE1 GLU 152 A GLU 152 1_555 B ZN ZN . A ZN 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 A OE2 GLU 152 A GLU 152 1_555 B ZN ZN . A ZN 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 A OD1 ASP 179 A ASP 179 1_555 C ZN ZN . A ZN 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc7 A OH TYR 218 A TYR 218 1_555 F NA NA . A NA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc8 A NE2 HIS 256 A HIS 256 1_555 B ZN ZN . A ZN 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc9 B ZN ZN . A ZN 292 1_555 G O LEU . A LEU 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc10 B ZN ZN . A ZN 292 1_555 G OXT LEU . A LEU 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc11 C ZN ZN . A ZN 293 1_555 G O LEU . A LEU 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc12 C ZN ZN . A ZN 293 1_555 G N LEU . A LEU 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc13 E NA NA . A NA 295 1_555 H O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc14 E NA NA . A NA 295 1_555 H O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc15 F NA NA . A NA 296 1_555 H O HOH . A HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc16 F NA NA . A NA 296 1_555 H O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3B3W _atom_sites.fract_transf_matrix[1][1] 0.009046 _atom_sites.fract_transf_matrix[1][2] 0.005223 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 292 1 ZN ZN . C 2 ZN A 1 293 2 ZN ZN . D 3 SCN A 1 294 1 SCN SCN . E 4 NA A 1 295 1 NA NA . F 4 NA A 1 296 2 NA NA . G 5 LEU A 1 297 1 LEU LEU . H 6 HOH A 1 298 1 HOH HOH . H 6 HOH A 2 299 2 HOH HOH . H 6 HOH A 3 300 3 HOH HOH . H 6 HOH A 4 301 4 HOH HOH . H 6 HOH A 5 302 5 HOH HOH . H 6 HOH A 6 303 6 HOH HOH . H 6 HOH A 7 304 7 HOH HOH . H 6 HOH A 8 305 8 HOH HOH . H 6 HOH A 9 306 9 HOH HOH . H 6 HOH A 10 307 10 HOH HOH . H 6 HOH A 11 308 11 HOH HOH . H 6 HOH A 12 309 12 HOH HOH . H 6 HOH A 13 310 13 HOH HOH . H 6 HOH A 14 311 14 HOH HOH . H 6 HOH A 15 312 15 HOH HOH . H 6 HOH A 16 313 16 HOH HOH . H 6 HOH A 17 314 17 HOH HOH . H 6 HOH A 18 315 18 HOH HOH . H 6 HOH A 19 316 19 HOH HOH . H 6 HOH A 20 317 20 HOH HOH . H 6 HOH A 21 318 21 HOH HOH . H 6 HOH A 22 319 22 HOH HOH . H 6 HOH A 23 320 23 HOH HOH . H 6 HOH A 24 321 24 HOH HOH . H 6 HOH A 25 322 25 HOH HOH . H 6 HOH A 26 323 26 HOH HOH . H 6 HOH A 27 324 27 HOH HOH . H 6 HOH A 28 325 28 HOH HOH . H 6 HOH A 29 326 29 HOH HOH . H 6 HOH A 30 327 30 HOH HOH . H 6 HOH A 31 328 31 HOH HOH . H 6 HOH A 32 329 32 HOH HOH . H 6 HOH A 33 330 33 HOH HOH . H 6 HOH A 34 331 34 HOH HOH . H 6 HOH A 35 332 35 HOH HOH . H 6 HOH A 36 333 36 HOH HOH . H 6 HOH A 37 334 37 HOH HOH . H 6 HOH A 38 335 38 HOH HOH . H 6 HOH A 39 336 39 HOH HOH . H 6 HOH A 40 337 40 HOH HOH . H 6 HOH A 41 338 41 HOH HOH . H 6 HOH A 42 339 42 HOH HOH . H 6 HOH A 43 340 43 HOH HOH . H 6 HOH A 44 341 44 HOH HOH . H 6 HOH A 45 342 45 HOH HOH . H 6 HOH A 46 343 46 HOH HOH . H 6 HOH A 47 344 47 HOH HOH . H 6 HOH A 48 345 48 HOH HOH . H 6 HOH A 49 346 49 HOH HOH . H 6 HOH A 50 347 50 HOH HOH . H 6 HOH A 51 348 51 HOH HOH . H 6 HOH A 52 349 52 HOH HOH . H 6 HOH A 53 350 53 HOH HOH . H 6 HOH A 54 351 54 HOH HOH . H 6 HOH A 55 352 55 HOH HOH . H 6 HOH A 56 353 56 HOH HOH . H 6 HOH A 57 354 57 HOH HOH . H 6 HOH A 58 355 58 HOH HOH . H 6 HOH A 59 356 59 HOH HOH . H 6 HOH A 60 357 60 HOH HOH . H 6 HOH A 61 358 61 HOH HOH . H 6 HOH A 62 359 62 HOH HOH . H 6 HOH A 63 360 63 HOH HOH . H 6 HOH A 64 361 64 HOH HOH . H 6 HOH A 65 362 65 HOH HOH . H 6 HOH A 66 363 66 HOH HOH . H 6 HOH A 67 364 67 HOH HOH . H 6 HOH A 68 365 68 HOH HOH . H 6 HOH A 69 366 69 HOH HOH . H 6 HOH A 70 367 70 HOH HOH . H 6 HOH A 71 368 71 HOH HOH . H 6 HOH A 72 369 72 HOH HOH . H 6 HOH A 73 370 73 HOH HOH . H 6 HOH A 74 371 74 HOH HOH . H 6 HOH A 75 372 75 HOH HOH . H 6 HOH A 76 373 76 HOH HOH . H 6 HOH A 77 374 77 HOH HOH . H 6 HOH A 78 375 78 HOH HOH . H 6 HOH A 79 376 79 HOH HOH . H 6 HOH A 80 377 80 HOH HOH . H 6 HOH A 81 378 81 HOH HOH . H 6 HOH A 82 379 82 HOH HOH . H 6 HOH A 83 380 83 HOH HOH . H 6 HOH A 84 381 84 HOH HOH . H 6 HOH A 85 382 85 HOH HOH . H 6 HOH A 86 383 86 HOH HOH . H 6 HOH A 87 384 87 HOH HOH . H 6 HOH A 88 385 88 HOH HOH . H 6 HOH A 89 386 89 HOH HOH . H 6 HOH A 90 387 90 HOH HOH . H 6 HOH A 91 388 91 HOH HOH . H 6 HOH A 92 389 92 HOH HOH . H 6 HOH A 93 390 93 HOH HOH . H 6 HOH A 94 391 94 HOH HOH . H 6 HOH A 95 392 95 HOH HOH . H 6 HOH A 96 393 96 HOH HOH . H 6 HOH A 97 394 97 HOH HOH . H 6 HOH A 98 395 98 HOH HOH . H 6 HOH A 99 396 99 HOH HOH . H 6 HOH A 100 397 100 HOH HOH . H 6 HOH A 101 398 101 HOH HOH . H 6 HOH A 102 399 102 HOH HOH . H 6 HOH A 103 400 104 HOH HOH . H 6 HOH A 104 401 105 HOH HOH . H 6 HOH A 105 402 106 HOH HOH . H 6 HOH A 106 403 107 HOH HOH . H 6 HOH A 107 404 108 HOH HOH . H 6 HOH A 108 405 109 HOH HOH . H 6 HOH A 109 406 110 HOH HOH . H 6 HOH A 110 407 111 HOH HOH . H 6 HOH A 111 408 112 HOH HOH . H 6 HOH A 112 409 113 HOH HOH . H 6 HOH A 113 410 114 HOH HOH . H 6 HOH A 114 411 115 HOH HOH . H 6 HOH A 115 412 116 HOH HOH . H 6 HOH A 116 413 117 HOH HOH . H 6 HOH A 117 414 118 HOH HOH . H 6 HOH A 118 415 119 HOH HOH . H 6 HOH A 119 416 120 HOH HOH . H 6 HOH A 120 417 121 HOH HOH . H 6 HOH A 121 418 122 HOH HOH . H 6 HOH A 122 419 123 HOH HOH . H 6 HOH A 123 420 124 HOH HOH . H 6 HOH A 124 421 125 HOH HOH . H 6 HOH A 125 422 126 HOH HOH . H 6 HOH A 126 423 127 HOH HOH . H 6 HOH A 127 424 128 HOH HOH . H 6 HOH A 128 425 129 HOH HOH . H 6 HOH A 129 426 130 HOH HOH . H 6 HOH A 130 427 131 HOH HOH . H 6 HOH A 131 428 132 HOH HOH . H 6 HOH A 132 429 133 HOH HOH . H 6 HOH A 133 430 134 HOH HOH . H 6 HOH A 134 431 135 HOH HOH . H 6 HOH A 135 432 136 HOH HOH . H 6 HOH A 136 433 137 HOH HOH . H 6 HOH A 137 434 138 HOH HOH . H 6 HOH A 138 435 139 HOH HOH . H 6 HOH A 139 436 140 HOH HOH . H 6 HOH A 140 437 141 HOH HOH . H 6 HOH A 141 438 142 HOH HOH . H 6 HOH A 142 439 143 HOH HOH . H 6 HOH A 143 440 144 HOH HOH . H 6 HOH A 144 441 145 HOH HOH . H 6 HOH A 145 442 146 HOH HOH . H 6 HOH A 146 443 147 HOH HOH . H 6 HOH A 147 444 148 HOH HOH . H 6 HOH A 148 445 149 HOH HOH . H 6 HOH A 149 446 150 HOH HOH . H 6 HOH A 150 447 151 HOH HOH . H 6 HOH A 151 448 152 HOH HOH . H 6 HOH A 152 449 153 HOH HOH . H 6 HOH A 153 450 154 HOH HOH . H 6 HOH A 154 451 155 HOH HOH . H 6 HOH A 155 452 156 HOH HOH . H 6 HOH A 156 453 158 HOH HOH . H 6 HOH A 157 454 159 HOH HOH . H 6 HOH A 158 455 160 HOH HOH . H 6 HOH A 159 456 161 HOH HOH . H 6 HOH A 160 457 162 HOH HOH . H 6 HOH A 161 458 163 HOH HOH . H 6 HOH A 162 459 164 HOH HOH . H 6 HOH A 163 460 165 HOH HOH . H 6 HOH A 164 461 166 HOH HOH . H 6 HOH A 165 462 167 HOH HOH . H 6 HOH A 166 463 168 HOH HOH . H 6 HOH A 167 464 169 HOH HOH . H 6 HOH A 168 465 170 HOH HOH . H 6 HOH A 169 466 171 HOH HOH . H 6 HOH A 170 467 172 HOH HOH . H 6 HOH A 171 468 173 HOH HOH . H 6 HOH A 172 469 174 HOH HOH . H 6 HOH A 173 470 175 HOH HOH . H 6 HOH A 174 471 176 HOH HOH . H 6 HOH A 175 472 177 HOH HOH . H 6 HOH A 176 473 178 HOH HOH . H 6 HOH A 177 474 179 HOH HOH . H 6 HOH A 178 475 180 HOH HOH . H 6 HOH A 179 476 181 HOH HOH . H 6 HOH A 180 477 182 HOH HOH . H 6 HOH A 181 478 183 HOH HOH . H 6 HOH A 182 479 184 HOH HOH . H 6 HOH A 183 480 185 HOH HOH . H 6 HOH A 184 481 186 HOH HOH . H 6 HOH A 185 482 187 HOH HOH . H 6 HOH A 186 483 188 HOH HOH . H 6 HOH A 187 484 189 HOH HOH . H 6 HOH A 188 485 190 HOH HOH . H 6 HOH A 189 486 191 HOH HOH . H 6 HOH A 190 487 192 HOH HOH . H 6 HOH A 191 488 193 HOH HOH . H 6 HOH A 192 489 194 HOH HOH . H 6 HOH A 193 490 195 HOH HOH . H 6 HOH A 194 491 196 HOH HOH . H 6 HOH A 195 492 197 HOH HOH . H 6 HOH A 196 493 198 HOH HOH . H 6 HOH A 197 494 199 HOH HOH . H 6 HOH A 198 495 200 HOH HOH . H 6 HOH A 199 496 201 HOH HOH . H 6 HOH A 200 497 202 HOH HOH . H 6 HOH A 201 498 203 HOH HOH . H 6 HOH A 202 499 204 HOH HOH . H 6 HOH A 203 500 205 HOH HOH . H 6 HOH A 204 501 206 HOH HOH . H 6 HOH A 205 502 207 HOH HOH . H 6 HOH A 206 503 208 HOH HOH . H 6 HOH A 207 504 209 HOH HOH . H 6 HOH A 208 505 210 HOH HOH . H 6 HOH A 209 506 211 HOH HOH . H 6 HOH A 210 507 212 HOH HOH . H 6 HOH A 211 508 213 HOH HOH . H 6 HOH A 212 509 214 HOH HOH . H 6 HOH A 213 510 215 HOH HOH . H 6 HOH A 214 511 216 HOH HOH . H 6 HOH A 215 512 217 HOH HOH . H 6 HOH A 216 513 218 HOH HOH . H 6 HOH A 217 514 219 HOH HOH . H 6 HOH A 218 515 220 HOH HOH . H 6 HOH A 219 516 221 HOH HOH . H 6 HOH A 220 517 222 HOH HOH . H 6 HOH A 221 518 223 HOH HOH . H 6 HOH A 222 519 224 HOH HOH . H 6 HOH A 223 520 225 HOH HOH . H 6 HOH A 224 521 226 HOH HOH . H 6 HOH A 225 522 227 HOH HOH . H 6 HOH A 226 523 228 HOH HOH . H 6 HOH A 227 524 229 HOH HOH . H 6 HOH A 228 525 230 HOH HOH . H 6 HOH A 229 526 231 HOH HOH . H 6 HOH A 230 527 232 HOH HOH . H 6 HOH A 231 528 233 HOH HOH . H 6 HOH A 232 529 234 HOH HOH . H 6 HOH A 233 530 235 HOH HOH . H 6 HOH A 234 531 236 HOH HOH . H 6 HOH A 235 532 237 HOH HOH . H 6 HOH A 236 533 238 HOH HOH . H 6 HOH A 237 534 239 HOH HOH . H 6 HOH A 238 535 240 HOH HOH . H 6 HOH A 239 536 241 HOH HOH . H 6 HOH A 240 537 242 HOH HOH . H 6 HOH A 241 538 243 HOH HOH . H 6 HOH A 242 539 244 HOH HOH . H 6 HOH A 243 540 245 HOH HOH . H 6 HOH A 244 541 246 HOH HOH . H 6 HOH A 245 542 247 HOH HOH . H 6 HOH A 246 543 248 HOH HOH . H 6 HOH A 247 544 249 HOH HOH . H 6 HOH A 248 545 250 HOH HOH . H 6 HOH A 249 546 251 HOH HOH . H 6 HOH A 250 547 252 HOH HOH . H 6 HOH A 251 548 253 HOH HOH . H 6 HOH A 252 549 254 HOH HOH . H 6 HOH A 253 550 255 HOH HOH . H 6 HOH A 254 551 256 HOH HOH . H 6 HOH A 255 552 257 HOH HOH . H 6 HOH A 256 553 258 HOH HOH . H 6 HOH A 257 554 259 HOH HOH . H 6 HOH A 258 555 260 HOH HOH . H 6 HOH A 259 556 261 HOH HOH . H 6 HOH A 260 557 262 HOH HOH . H 6 HOH A 261 558 263 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.457 _atom_site.Cartn_y -8.826 _atom_site.Cartn_z 15.986 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 295 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #