data_3B3X
#
_model_server_result.job_id            tjMzRQIbPv7LqesRumcP-A 
_model_server_result.datetime_utc      '2024-10-18 15:29:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3b3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    3B3X 
#
_exptl.entry_id    3B3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              191.139 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(carboxymethyl)-D-aspartic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.96 
_cell.angle_gamma         90 
_cell.entry_id            3B3X 
_cell.length_a            46.665 
_cell.length_b            104.71 
_cell.length_c            63.884 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3B3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C6 H9 N O6' 
_chem_comp.formula_weight    191.139 
_chem_comp.id                A33 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(carboxymethyl)-D-aspartic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O92 C9 A33 doub 1 n n 
C9 O91 A33 sing 2 n n 
C9 C3 A33 sing 3 n n 
O12 C1 A33 doub 4 n n 
O52 C5 A33 doub 5 n n 
C4 C3 A33 sing 6 n n 
C4 C5 A33 sing 7 n n 
C3 NZ A33 sing 8 n n 
C3 C2 A33 sing 9 n n 
C1 C2 A33 sing 10 n n 
C1 O11 A33 sing 11 n n 
C5 O51 A33 sing 12 n n 
C2 H21 A33 sing 13 n n 
C2 H22 A33 sing 14 n n 
C4 H41 A33 sing 15 n n 
C4 H42 A33 sing 16 n n 
NZ HZ1 A33 sing 17 n n 
NZ HZ2 A33 sing 18 n n 
O91 H91 A33 sing 19 n n 
O11 H11 A33 sing 20 n n 
O51 H51 A33 sing 21 n n 
#
_atom_sites.entry_id                     3B3X 
_atom_sites.fract_transf_matrix[1][1]    0.021429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001483 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015691 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A33 A 1 300 300 A33 A33 . 
D 2 A33 B 1 300 300 A33 A33 . 
E 3 HOH A 1 301 1 HOH HOH . 
E 3 HOH A 2 302 2 HOH HOH . 
E 3 HOH A 3 303 3 HOH HOH . 
E 3 HOH A 4 304 6 HOH HOH . 
E 3 HOH A 5 305 7 HOH HOH . 
E 3 HOH A 6 306 8 HOH HOH . 
E 3 HOH A 7 307 9 HOH HOH . 
E 3 HOH A 8 308 10 HOH HOH . 
E 3 HOH A 9 309 11 HOH HOH . 
E 3 HOH A 10 310 12 HOH HOH . 
E 3 HOH A 11 311 13 HOH HOH . 
E 3 HOH A 12 312 14 HOH HOH . 
E 3 HOH A 13 313 16 HOH HOH . 
E 3 HOH A 14 314 17 HOH HOH . 
E 3 HOH A 15 315 19 HOH HOH . 
E 3 HOH A 16 316 20 HOH HOH . 
E 3 HOH A 17 317 22 HOH HOH . 
E 3 HOH A 18 318 24 HOH HOH . 
E 3 HOH A 19 319 25 HOH HOH . 
E 3 HOH A 20 320 27 HOH HOH . 
E 3 HOH A 21 321 28 HOH HOH . 
E 3 HOH A 22 322 30 HOH HOH . 
E 3 HOH A 23 323 31 HOH HOH . 
E 3 HOH A 24 324 34 HOH HOH . 
E 3 HOH A 25 325 36 HOH HOH . 
E 3 HOH A 26 326 38 HOH HOH . 
E 3 HOH A 27 327 39 HOH HOH . 
E 3 HOH A 28 328 40 HOH HOH . 
E 3 HOH A 29 329 41 HOH HOH . 
E 3 HOH A 30 330 43 HOH HOH . 
E 3 HOH A 31 331 44 HOH HOH . 
E 3 HOH A 32 332 50 HOH HOH . 
E 3 HOH A 33 333 51 HOH HOH . 
E 3 HOH A 34 334 52 HOH HOH . 
E 3 HOH A 35 335 53 HOH HOH . 
E 3 HOH A 36 336 54 HOH HOH . 
E 3 HOH A 37 337 57 HOH HOH . 
E 3 HOH A 38 338 58 HOH HOH . 
E 3 HOH A 39 339 59 HOH HOH . 
E 3 HOH A 40 340 60 HOH HOH . 
E 3 HOH A 41 341 61 HOH HOH . 
E 3 HOH A 42 342 63 HOH HOH . 
E 3 HOH A 43 343 66 HOH HOH . 
E 3 HOH A 44 344 68 HOH HOH . 
E 3 HOH A 45 345 70 HOH HOH . 
E 3 HOH A 46 346 71 HOH HOH . 
E 3 HOH A 47 347 72 HOH HOH . 
E 3 HOH A 48 348 73 HOH HOH . 
E 3 HOH A 49 349 75 HOH HOH . 
E 3 HOH A 50 350 76 HOH HOH . 
E 3 HOH A 51 351 79 HOH HOH . 
E 3 HOH A 52 352 81 HOH HOH . 
E 3 HOH A 53 353 84 HOH HOH . 
E 3 HOH A 54 354 86 HOH HOH . 
E 3 HOH A 55 355 87 HOH HOH . 
E 3 HOH A 56 356 89 HOH HOH . 
E 3 HOH A 57 357 90 HOH HOH . 
E 3 HOH A 58 358 91 HOH HOH . 
E 3 HOH A 59 359 92 HOH HOH . 
E 3 HOH A 60 360 93 HOH HOH . 
E 3 HOH A 61 361 95 HOH HOH . 
E 3 HOH A 62 362 96 HOH HOH . 
E 3 HOH A 63 363 97 HOH HOH . 
E 3 HOH A 64 364 98 HOH HOH . 
E 3 HOH A 65 365 99 HOH HOH . 
E 3 HOH A 66 366 105 HOH HOH . 
E 3 HOH A 67 367 106 HOH HOH . 
E 3 HOH A 68 368 107 HOH HOH . 
E 3 HOH A 69 369 110 HOH HOH . 
E 3 HOH A 70 370 111 HOH HOH . 
E 3 HOH A 71 371 113 HOH HOH . 
E 3 HOH A 72 372 114 HOH HOH . 
E 3 HOH A 73 373 116 HOH HOH . 
E 3 HOH A 74 374 118 HOH HOH . 
E 3 HOH A 75 375 121 HOH HOH . 
E 3 HOH A 76 376 122 HOH HOH . 
E 3 HOH A 77 377 123 HOH HOH . 
E 3 HOH A 78 378 124 HOH HOH . 
E 3 HOH A 79 379 128 HOH HOH . 
E 3 HOH A 80 380 129 HOH HOH . 
E 3 HOH A 81 381 130 HOH HOH . 
E 3 HOH A 82 382 132 HOH HOH . 
E 3 HOH A 83 383 134 HOH HOH . 
E 3 HOH A 84 384 135 HOH HOH . 
E 3 HOH A 85 385 136 HOH HOH . 
E 3 HOH A 86 386 138 HOH HOH . 
E 3 HOH A 87 387 139 HOH HOH . 
E 3 HOH A 88 388 141 HOH HOH . 
E 3 HOH A 89 389 144 HOH HOH . 
E 3 HOH A 90 390 148 HOH HOH . 
E 3 HOH A 91 391 150 HOH HOH . 
E 3 HOH A 92 392 151 HOH HOH . 
E 3 HOH A 93 393 152 HOH HOH . 
E 3 HOH A 94 394 156 HOH HOH . 
F 3 HOH B 1 301 4 HOH HOH . 
F 3 HOH B 2 302 5 HOH HOH . 
F 3 HOH B 3 303 15 HOH HOH . 
F 3 HOH B 4 304 18 HOH HOH . 
F 3 HOH B 5 305 21 HOH HOH . 
F 3 HOH B 6 306 23 HOH HOH . 
F 3 HOH B 7 307 26 HOH HOH . 
F 3 HOH B 8 308 29 HOH HOH . 
F 3 HOH B 9 309 32 HOH HOH . 
F 3 HOH B 10 310 33 HOH HOH . 
F 3 HOH B 11 311 35 HOH HOH . 
F 3 HOH B 12 312 37 HOH HOH . 
F 3 HOH B 13 313 42 HOH HOH . 
F 3 HOH B 14 314 45 HOH HOH . 
F 3 HOH B 15 315 46 HOH HOH . 
F 3 HOH B 16 316 47 HOH HOH . 
F 3 HOH B 17 317 48 HOH HOH . 
F 3 HOH B 18 318 49 HOH HOH . 
F 3 HOH B 19 319 55 HOH HOH . 
F 3 HOH B 20 320 56 HOH HOH . 
F 3 HOH B 21 321 62 HOH HOH . 
F 3 HOH B 22 322 64 HOH HOH . 
F 3 HOH B 23 323 65 HOH HOH . 
F 3 HOH B 24 324 67 HOH HOH . 
F 3 HOH B 25 325 69 HOH HOH . 
F 3 HOH B 26 326 74 HOH HOH . 
F 3 HOH B 27 327 77 HOH HOH . 
F 3 HOH B 28 328 78 HOH HOH . 
F 3 HOH B 29 329 80 HOH HOH . 
F 3 HOH B 30 330 82 HOH HOH . 
F 3 HOH B 31 331 83 HOH HOH . 
F 3 HOH B 32 332 85 HOH HOH . 
F 3 HOH B 33 333 88 HOH HOH . 
F 3 HOH B 34 334 94 HOH HOH . 
F 3 HOH B 35 335 100 HOH HOH . 
F 3 HOH B 36 336 101 HOH HOH . 
F 3 HOH B 37 337 102 HOH HOH . 
F 3 HOH B 38 338 103 HOH HOH . 
F 3 HOH B 39 339 104 HOH HOH . 
F 3 HOH B 40 340 108 HOH HOH . 
F 3 HOH B 41 341 109 HOH HOH . 
F 3 HOH B 42 342 112 HOH HOH . 
F 3 HOH B 43 343 115 HOH HOH . 
F 3 HOH B 44 344 117 HOH HOH . 
F 3 HOH B 45 345 119 HOH HOH . 
F 3 HOH B 46 346 120 HOH HOH . 
F 3 HOH B 47 347 125 HOH HOH . 
F 3 HOH B 48 348 126 HOH HOH . 
F 3 HOH B 49 349 127 HOH HOH . 
F 3 HOH B 50 350 131 HOH HOH . 
F 3 HOH B 51 351 133 HOH HOH . 
F 3 HOH B 52 352 137 HOH HOH . 
F 3 HOH B 53 353 140 HOH HOH . 
F 3 HOH B 54 354 142 HOH HOH . 
F 3 HOH B 55 355 143 HOH HOH . 
F 3 HOH B 56 356 145 HOH HOH . 
F 3 HOH B 57 357 146 HOH HOH . 
F 3 HOH B 58 358 147 HOH HOH . 
F 3 HOH B 59 359 149 HOH HOH . 
F 3 HOH B 60 360 153 HOH HOH . 
F 3 HOH B 61 361 154 HOH HOH . 
F 3 HOH B 62 362 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A33 . . . D 2 37.576 80.925 29.111 1 41.03 ? C1 A33 300 B 1 
HETATM 2 C C2 A33 . . . D 2 36.283 80.898 28.286 1 39.28 ? C2 A33 300 B 1 
HETATM 3 C C3 A33 . . . D 2 35.91 79.556 27.599 1 39.17 ? C3 A33 300 B 1 
HETATM 4 C C4 A33 . . . D 2 36.914 78.435 27.918 1 38.9 ? C4 A33 300 B 1 
HETATM 5 C C5 A33 . . . D 2 36.424 77.28 28.754 1 39.15 ? C5 A33 300 B 1 
HETATM 6 O O92 A33 . . . D 2 35.728 78.57 25.448 1 37.23 ? O92 A33 300 B 1 
HETATM 7 C C9 A33 . . . D 2 35.94 79.646 26.076 1 39.19 ? C9 A33 300 B 1 
HETATM 8 O O91 A33 . . . D 2 36.171 80.746 25.482 1 37.07 ? O91 A33 300 B 1 
HETATM 9 O O12 A33 . . . D 2 38.531 81.664 28.78 1 39.27 ? O12 A33 300 B 1 
HETATM 10 O O11 A33 . . . D 2 37.684 80.207 30.134 1 43.4 ? O11 A33 300 B 1 
HETATM 11 N NZ A33 . . . D 2 34.524 79.203 27.964 1 37.99 ? NZ A33 300 B 1 
HETATM 12 O O51 A33 . . . D 2 35.767 77.546 29.781 1 39.79 ? O51 A33 300 B 1 
HETATM 13 O O52 A33 . . . D 2 36.726 76.113 28.387 1 37.45 ? O52 A33 300 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#