data_3B5D # _model_server_result.job_id eHBqrsAfABCnm-oRoNtXRw _model_server_result.datetime_utc '2024-12-26 19:47:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":350}' # _entry.id 3B5D # _exptl.entry_id 3B5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.389 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRAPHENYLPHOSPHONIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.1 _cell.angle_gamma 90 _cell.entry_id 3B5D _cell.length_a 115.1 _cell.length_b 43.7 _cell.length_c 76.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H20 P 1' _chem_comp.formula_weight 339.389 _chem_comp.id P4P _chem_comp.mon_nstd_flag . _chem_comp.name TETRAPHENYLPHOSPHONIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P C1A P4P sing 235 n n P C1C P4P sing 236 n n P C1D P4P sing 237 n n P C1B P4P sing 238 n n C1A C2A P4P sing 239 n y C1A C6A P4P doub 240 n y C2A C3A P4P doub 241 n y C2A H2A P4P sing 242 n n C3A C4A P4P sing 243 n y C3A H3A P4P sing 244 n n C4A C5A P4P doub 245 n y C4A H4A P4P sing 246 n n C5A C6A P4P sing 247 n y C5A H5A P4P sing 248 n n C6A H6A P4P sing 249 n n C1C C6C P4P doub 250 n y C1C C2C P4P sing 251 n y C6C C5C P4P sing 252 n y C6C H6C P4P sing 253 n n C5C C4C P4P doub 254 n y C5C H5C P4P sing 255 n n C4C C3C P4P sing 256 n y C4C H4C P4P sing 257 n n C3C C2C P4P doub 258 n y C3C H3C P4P sing 259 n n C2C H2C P4P sing 260 n n C1D C6D P4P doub 261 n y C1D C2D P4P sing 262 n y C6D C5D P4P sing 263 n y C6D H6D P4P sing 264 n n C5D C4D P4P doub 265 n y C5D H5D P4P sing 266 n n C4D C3D P4P sing 267 n y C4D H4D P4P sing 268 n n C3D C2D P4P doub 269 n y C3D H3D P4P sing 270 n n C2D H2D P4P sing 271 n n C6B C5B P4P doub 272 n y C6B C1B P4P sing 273 n y C6B H6B P4P sing 274 n n C5B C4B P4P sing 275 n y C5B H5B P4P sing 276 n n C4B C3B P4P doub 277 n y C4B H4B P4P sing 278 n n C3B C2B P4P sing 279 n y C3B H3B P4P sing 280 n n C2B C1B P4P doub 281 n y C2B H2B P4P sing 282 n n # _atom_sites.entry_id 3B5D _atom_sites.fract_transf_matrix[1][1] 0.008688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00284 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id P4P _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 350 _pdbx_nonpoly_scheme.auth_seq_num 350 _pdbx_nonpoly_scheme.pdb_mon_id P4P _pdbx_nonpoly_scheme.auth_mon_id TTA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P P4P . . . C 2 2.019 -0.591 -13.716 1 254.18 ? P P4P 350 A 1 HETATM 2 C C1A P4P . . . C 2 2.742 0.79 -12.745 1 254.18 ? C1A P4P 350 A 1 HETATM 3 C C2A P4P . . . C 2 1.919 1.934 -12.497 1 254.18 ? C2A P4P 350 A 1 HETATM 4 C C3A P4P . . . C 2 2.528 2.992 -11.715 1 254.18 ? C3A P4P 350 A 1 HETATM 5 C C4A P4P . . . C 2 3.801 2.891 -11.252 1 254.18 ? C4A P4P 350 A 1 HETATM 6 C C5A P4P . . . C 2 4.671 1.738 -11.483 1 254.18 ? C5A P4P 350 A 1 HETATM 7 C C6A P4P . . . C 2 4.072 0.621 -12.292 1 254.18 ? C6A P4P 350 A 1 HETATM 8 C C1C P4P . . . C 2 3.427 -1.664 -14.275 1 254.18 ? C1C P4P 350 A 1 HETATM 9 C C6C P4P . . . C 2 4.323 -1.355 -15.391 1 254.18 ? C6C P4P 350 A 1 HETATM 10 C C5C P4P . . . C 2 5.381 -2.219 -15.753 1 254.18 ? C5C P4P 350 A 1 HETATM 11 C C4C P4P . . . C 2 5.572 -3.447 -14.987 1 254.18 ? C4C P4P 350 A 1 HETATM 12 C C3C P4P . . . C 2 4.675 -3.77 -13.862 1 254.18 ? C3C P4P 350 A 1 HETATM 13 C C2C P4P . . . C 2 3.614 -2.902 -13.5 1 254.18 ? C2C P4P 350 A 1 HETATM 14 C C1D P4P . . . C 2 0.726 -1.223 -12.519 1 254.18 ? C1D P4P 350 A 1 HETATM 15 C C6D P4P . . . C 2 1.152 -1.718 -11.166 1 254.18 ? C6D P4P 350 A 1 HETATM 16 C C5D P4P . . . C 2 0.086 -2.206 -10.227 1 254.18 ? C5D P4P 350 A 1 HETATM 17 C C4D P4P . . . C 2 -1.308 -2.177 -10.658 1 254.18 ? C4D P4P 350 A 1 HETATM 18 C C3D P4P . . . C 2 -1.73 -1.707 -11.945 1 254.18 ? C3D P4P 350 A 1 HETATM 19 C C2D P4P . . . C 2 -0.728 -1.232 -12.869 1 254.18 ? C2D P4P 350 A 1 HETATM 20 C C6B P4P . . . C 2 0.879 1.245 -15.696 1 254.18 ? C6B P4P 350 A 1 HETATM 21 C C5B P4P . . . C 2 0.135 1.48 -16.909 1 254.18 ? C5B P4P 350 A 1 HETATM 22 C C4B P4P . . . C 2 -0.382 0.414 -17.638 1 254.18 ? C4B P4P 350 A 1 HETATM 23 C C3B P4P . . . C 2 -0.201 -0.946 -17.225 1 254.18 ? C3B P4P 350 A 1 HETATM 24 C C2B P4P . . . C 2 0.556 -1.252 -15.984 1 254.18 ? C2B P4P 350 A 1 HETATM 25 C C1B P4P . . . C 2 1.082 -0.096 -15.244 1 254.18 ? C1B P4P 350 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #